Wall clock time and date at job start Tue Mar 31 2020 10:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47215 * 2 1 4 4 H 1.08999 * 109.82145 * 54.11295 * 3 2 1 5 5 C 1.54373 * 109.82942 * 175.00200 * 3 2 1 6 6 C 1.55312 * 102.25520 * 140.86846 * 5 3 2 7 7 C 1.54946 * 100.93886 * 325.86755 * 6 5 3 8 8 H 1.09007 * 110.30394 * 277.42797 * 7 6 5 9 9 C 1.50692 * 110.31092 * 155.36122 * 7 6 5 10 10 O 1.21283 * 119.99732 * 244.99780 * 9 7 6 11 11 N 1.34776 * 120.00370 * 64.99212 * 9 7 6 12 12 C 1.46502 * 120.00163 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47125 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46985 * 174.93704 * 13 12 11 15 15 C 1.52999 * 115.55419 * 65.28810 * 14 13 12 16 16 N 1.46489 * 109.47025 * 65.14730 * 15 14 13 17 17 C 1.36946 * 119.99730 * 175.04568 * 16 15 14 18 18 H 1.07997 * 120.00022 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99802 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00353 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00007 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46732 * 60.00523 * 21 19 17 23 23 H 1.48497 * 109.47123 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47413 * 300.00595 * 21 19 17 25 25 C 1.53008 * 117.49620 * 279.61526 * 14 13 12 26 26 C 1.53000 * 117.49504 * 210.95725 * 14 13 12 27 27 O 1.43237 * 109.82512 * 293.13369 * 3 2 1 28 28 H 1.08996 * 109.47359 * 60.00403 * 1 2 3 29 29 H 1.09008 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47069 * 300.00067 * 1 2 3 31 31 H 1.09001 * 109.47069 * 239.99933 * 2 1 3 32 32 H 1.08999 * 109.47117 * 120.00056 * 2 1 3 33 33 H 1.09001 * 110.84838 * 259.05452 * 5 3 2 34 34 H 1.09006 * 110.85373 * 22.47669 * 5 3 2 35 35 H 1.09004 * 111.12062 * 83.77887 * 6 5 3 36 36 H 1.08996 * 111.12681 * 207.90030 * 6 5 3 37 37 H 0.96995 * 119.99971 * 0.02562 * 11 9 7 38 38 H 1.09008 * 109.46943 * 300.00441 * 12 11 9 39 39 H 1.09000 * 109.47598 * 59.99989 * 12 11 9 40 40 H 1.08999 * 109.46644 * 294.93025 * 13 12 11 41 41 H 1.08992 * 109.47169 * 54.93341 * 13 12 11 42 42 H 1.09001 * 109.46934 * 185.15123 * 15 14 13 43 43 H 1.09008 * 109.46811 * 305.14444 * 15 14 13 44 44 H 0.97001 * 120.00409 * 355.04583 * 16 15 14 45 45 H 0.97002 * 120.00037 * 179.97438 * 20 19 17 46 46 H 1.09000 * 117.49902 * 0.02562 * 25 14 13 47 47 H 1.08998 * 117.49736 * 145.02024 * 25 14 13 48 48 H 1.09004 * 117.50008 * 214.97457 * 26 14 13 49 49 H 1.08999 * 117.50316 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9913 0.8308 5 6 3.5785 1.4540 0.1265 6 6 3.9798 2.6054 -0.8355 7 6 2.8993 2.4588 -1.9363 8 1 3.1873 1.6853 -2.6484 9 6 2.6945 3.7721 -2.6464 10 8 1.6306 4.3481 -2.5610 11 7 3.6936 4.3067 -3.3761 12 6 3.4947 5.5837 -4.0659 13 6 4.7731 5.9626 -4.8163 14 6 4.5258 7.2295 -5.6377 15 6 4.2380 8.4954 -4.8281 16 7 5.4237 8.8554 -4.0468 17 6 5.4378 10.0153 -3.3189 18 1 4.5750 10.6649 -3.3213 19 6 6.5611 10.3562 -2.5782 20 7 7.6129 9.5649 -2.5757 21 14 6.5808 11.9388 -1.5859 22 1 5.4857 11.9079 -0.5833 23 1 7.8855 12.0700 -0.8891 24 1 6.3863 13.0961 -2.4959 25 6 3.8101 7.0720 -6.9809 26 6 5.3073 7.3885 -6.9434 27 8 1.7028 2.0770 -1.2391 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8820 1.6792 1.1489 34 1 4.0019 0.5047 -0.2018 35 1 3.9075 3.5739 -0.3405 36 1 4.9791 2.4479 -1.2413 37 1 4.5444 3.8459 -3.4446 38 1 2.6720 5.4895 -4.7748 39 1 3.2583 6.3581 -3.3361 40 1 5.5743 6.1447 -4.1000 41 1 5.0587 5.1481 -5.4817 42 1 3.9881 9.3114 -5.5062 43 1 3.4004 8.3133 -4.1545 44 1 6.1988 8.2722 -4.0449 45 1 8.3980 9.8033 -2.0583 46 1 3.5150 6.0659 -7.2791 47 1 3.1344 7.8704 -7.2878 48 1 5.6160 8.3950 -7.2259 49 1 5.9973 6.5905 -7.2175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165293907.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:53 Heat of formation + Delta-G solvation = -86.426415 kcal Electronic energy + Delta-G solvation = -25866.320547 eV Core-core repulsion = 22213.830369 eV Total energy + Delta-G solvation = -3652.490178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42780 -39.97473 -39.31347 -36.12119 -35.76634 -34.51585 -33.24185 -32.78662 -31.43939 -29.41312 -27.75373 -25.67418 -24.64125 -24.17290 -23.02716 -22.82764 -22.07871 -21.28404 -19.97457 -19.07615 -18.60513 -17.78449 -17.00666 -16.91692 -16.65347 -16.42139 -15.95391 -15.71633 -15.32432 -15.09303 -14.95385 -14.83080 -14.33094 -14.25049 -14.00818 -13.91242 -13.89360 -13.16112 -13.10237 -13.01970 -12.79639 -12.77741 -12.52088 -12.40771 -12.28291 -12.21519 -11.94427 -11.90297 -11.82862 -11.79566 -11.60270 -11.15081 -11.03403 -10.87714 -10.58863 -10.39375 -10.14038 -8.97456 -7.95429 -5.22659 1.45252 1.47892 1.52148 1.53882 1.87809 2.53666 2.88496 2.95783 3.37198 3.41079 3.64136 3.74972 3.81832 3.85592 3.99381 4.00974 4.07716 4.09140 4.20306 4.24062 4.31702 4.44224 4.45929 4.49041 4.54357 4.62812 4.81880 4.84256 4.84779 4.92101 4.94167 4.97517 4.98485 5.07842 5.09615 5.12617 5.19112 5.26263 5.32191 5.34410 5.36024 5.41567 5.42186 5.47600 5.97412 6.27264 6.53034 7.20355 7.34431 8.10427 8.36942 9.27576 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013321 B = 0.002862 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.481438 B = 9780.130992 C =11136.288849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.064 3.936 4 H 0.069 0.931 5 C -0.139 4.139 6 C -0.145 4.145 7 C 0.067 3.933 8 H 0.128 0.872 9 C 0.503 3.497 10 O -0.581 6.581 11 N -0.709 5.709 12 C 0.133 3.867 13 C -0.072 4.072 14 C -0.141 4.141 15 C 0.186 3.814 16 N -0.734 5.734 17 C -0.248 4.248 18 H 0.068 0.932 19 C -0.070 4.070 20 N -0.964 5.964 21 Si 0.969 3.031 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.279 1.279 25 C -0.151 4.151 26 C -0.161 4.161 27 O -0.381 6.381 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.123 0.877 37 H 0.417 0.583 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.016 0.984 43 H 0.010 0.990 44 H 0.377 0.623 45 H 0.252 0.748 46 H 0.117 0.883 47 H 0.093 0.907 48 H 0.077 0.923 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 -23.473 -0.581 24.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.007 3.993 4 H 0.087 0.913 5 C -0.176 4.176 6 C -0.183 4.183 7 C 0.006 3.994 8 H 0.146 0.854 9 C 0.290 3.710 10 O -0.460 6.460 11 N -0.363 5.363 12 C 0.010 3.990 13 C -0.110 4.110 14 C -0.142 4.142 15 C 0.060 3.940 16 N -0.377 5.377 17 C -0.380 4.380 18 H 0.086 0.914 19 C -0.263 4.263 20 N -0.615 5.615 21 Si 0.798 3.202 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.188 4.188 26 C -0.198 4.198 27 O -0.300 6.300 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.254 0.746 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.034 0.966 43 H 0.027 0.973 44 H 0.210 0.790 45 H 0.061 0.939 46 H 0.135 0.865 47 H 0.111 0.889 48 H 0.096 0.904 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.920 -22.867 -0.524 23.897 hybrid contribution 0.664 1.172 0.747 1.540 sum -6.256 -21.695 0.223 22.580 Atomic orbital electron populations 1.21728 0.96167 1.01838 1.01244 1.21891 0.96293 0.94455 1.03669 1.23098 0.96171 0.94233 0.85761 0.91326 1.23194 0.93275 0.99624 1.01499 1.23301 0.99625 0.99996 0.95387 1.22971 0.86867 0.93131 0.96403 0.85433 1.21214 0.83524 0.87533 0.78732 1.90700 1.28311 1.63979 1.63026 1.45796 1.16598 1.23377 1.50494 1.21134 0.98610 0.84156 0.95140 1.21075 0.95874 0.95618 0.98432 1.21415 1.07765 0.95490 0.89574 1.20247 0.89019 0.92825 0.91949 1.42396 1.15282 1.24406 1.55599 1.19555 0.99224 0.98799 1.20404 0.91437 1.25472 0.96258 1.02038 1.02534 1.69787 1.05378 1.39609 1.46708 0.85282 0.76432 0.79877 0.78594 1.20873 1.21718 1.20497 1.23100 0.94644 1.03746 0.97352 1.22978 0.95028 1.02699 0.99124 1.88537 1.28906 1.78463 1.34115 0.94277 0.91476 0.93068 0.90858 0.88702 0.88462 0.87425 0.91999 0.85886 0.74550 0.91542 0.94717 0.92151 0.88265 0.96576 0.97261 0.79004 0.93934 0.86460 0.88867 0.90395 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.83 71.98 0.71 -1.71 16 2 C -0.13 -1.66 5.50 30.59 0.17 -1.49 16 3 C 0.06 1.14 3.51 31.06 0.11 1.25 16 4 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 5 C -0.14 -1.63 6.54 31.85 0.21 -1.42 16 6 C -0.15 -2.25 6.55 32.05 0.21 -2.04 16 7 C 0.07 1.37 3.86 30.51 0.12 1.49 16 8 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 9 C 0.50 14.59 7.19 87.65 0.63 15.22 16 10 O -0.58 -23.59 16.55 15.46 0.26 -23.33 16 11 N -0.71 -17.08 5.54 -463.05 -2.57 -19.65 16 12 C 0.13 3.93 5.41 86.38 0.47 4.39 16 13 C -0.07 -1.96 5.12 30.59 0.16 -1.80 16 14 C -0.14 -4.39 1.56 -52.18 -0.08 -4.47 16 15 C 0.19 7.77 5.93 86.38 0.51 8.28 16 16 N -0.73 -37.76 5.52 -343.46 -1.89 -39.66 16 17 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 18 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 19 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 20 N -0.96 -58.66 13.06 21.65 0.28 -58.38 16 21 Si 0.97 46.92 29.55 68.60 2.03 48.95 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 C -0.15 -3.66 9.94 30.62 0.30 -3.35 16 26 C -0.16 -4.43 9.94 30.62 0.30 -4.12 16 27 O -0.38 -9.83 9.90 -130.48 -1.29 -11.12 16 28 H 0.04 0.80 7.90 -2.39 -0.02 0.78 16 29 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 0.75 7.85 -2.38 -0.02 0.73 16 35 H 0.06 1.28 8.05 -2.38 -0.02 1.26 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.42 6.77 8.47 -92.71 -0.79 5.99 16 38 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.03 1.31 7.23 -2.39 -0.02 1.29 16 40 H 0.06 1.93 7.49 -2.39 -0.02 1.91 16 41 H 0.10 1.96 8.09 -2.39 -0.02 1.94 16 42 H 0.02 0.69 8.09 -2.39 -0.02 0.67 16 43 H 0.01 0.42 7.11 -2.38 -0.02 0.41 16 44 H 0.38 20.19 7.03 -92.71 -0.65 19.53 16 45 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 46 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.08 2.43 8.14 -2.38 -0.02 2.42 16 49 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -77.57 397.10 1.43 -76.15 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -0.51 Total: 33.81 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 5.12 Total: -6.77 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -4.18 Total: -117.68 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.04 Total: -34.45 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -77.57 1.43 -76.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165293907.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.281 kcal (2) G-P(sol) polarization free energy of solvation -77.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds