Wall clock time and date at job start Tue Mar 31 2020 10:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47087 * 2 1 4 4 H 1.09000 * 110.43390 * 52.44791 * 3 2 1 5 5 C 1.54817 * 110.48605 * 289.76674 * 3 2 1 6 6 C 1.54998 * 102.09136 * 220.44200 * 5 3 2 7 7 O 1.44386 * 103.48994 * 37.02319 * 6 5 3 8 8 C 1.43748 * 106.97429 * 319.93787 * 7 6 5 9 9 H 1.08997 * 110.00576 * 267.01942 * 8 7 6 10 10 C 1.50705 * 109.87755 * 145.93670 * 8 7 6 11 11 O 1.21287 * 119.99701 * 357.17052 * 10 8 7 12 12 N 1.34771 * 120.00063 * 177.16943 * 10 8 7 13 13 C 1.46497 * 120.00136 * 174.91550 * 12 10 8 14 14 C 1.53001 * 109.47117 * 184.48059 * 13 12 10 15 15 C 1.52997 * 109.46860 * 180.02562 * 14 13 12 16 16 C 1.53000 * 115.55610 * 65.26598 * 15 14 13 17 17 N 1.46498 * 109.46950 * 65.69693 * 16 15 14 18 18 C 1.36940 * 119.99831 * 185.60733 * 17 16 15 19 19 H 1.07998 * 120.00074 * 4.63074 * 18 17 16 20 20 C 1.38812 * 119.99766 * 184.62932 * 18 17 16 21 21 N 1.31624 * 119.99761 * 180.60094 * 20 18 17 22 22 Si 1.86802 * 120.00146 * 0.60570 * 20 18 17 23 23 H 1.48505 * 109.47088 * 84.70218 * 22 20 18 24 24 H 1.48502 * 109.47007 * 204.69935 * 22 20 18 25 25 H 1.48498 * 109.47170 * 324.70538 * 22 20 18 26 26 C 1.53007 * 117.49659 * 279.59365 * 15 14 13 27 27 C 1.53002 * 117.49526 * 210.93777 * 15 14 13 28 28 H 1.08993 * 109.47183 * 300.00391 * 1 2 3 29 29 H 1.09003 * 109.46948 * 60.00002 * 1 2 3 30 30 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47237 * 119.99301 * 2 1 3 32 32 H 1.08996 * 109.47457 * 240.00052 * 2 1 3 33 33 H 1.08996 * 110.90525 * 338.64199 * 5 3 2 34 34 H 1.09000 * 110.90839 * 102.24464 * 5 3 2 35 35 H 1.09002 * 110.61577 * 278.52259 * 6 5 3 36 36 H 1.08997 * 110.61555 * 155.52029 * 6 5 3 37 37 H 0.97003 * 119.99811 * 354.91736 * 12 10 8 38 38 H 1.09004 * 109.46766 * 304.47994 * 13 12 10 39 39 H 1.08997 * 109.46943 * 64.47971 * 13 12 10 40 40 H 1.09008 * 109.46605 * 300.02390 * 14 13 12 41 41 H 1.08994 * 109.47076 * 60.02403 * 14 13 12 42 42 H 1.08996 * 109.47307 * 185.69471 * 16 15 14 43 43 H 1.09002 * 109.46887 * 305.69695 * 16 15 14 44 44 H 0.97000 * 119.99982 * 5.60481 * 17 16 15 45 45 H 0.96994 * 119.99764 * 180.02562 * 21 20 18 46 46 H 1.08997 * 117.49648 * 0.02562 * 26 15 14 47 47 H 1.08998 * 117.50105 * 145.02031 * 26 15 14 48 48 H 1.09006 * 117.49950 * 214.97409 * 27 15 14 49 49 H 1.08998 * 117.49847 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5800 2.0088 0.8098 5 6 1.7582 2.1168 -1.3648 6 6 3.0603 2.9231 -1.6036 7 8 4.0921 2.0593 -1.0801 8 6 3.5756 1.4718 0.1259 9 1 3.8655 2.0731 0.9875 10 6 4.1039 0.0687 0.2793 11 8 4.8096 -0.4112 -0.5825 12 7 3.7924 -0.6527 1.3743 13 6 4.2121 -2.0527 1.4729 14 6 3.6401 -2.6678 2.7518 15 6 4.0790 -4.1298 2.8551 16 6 5.5819 -4.3569 3.0298 17 7 6.0095 -3.8208 4.3244 18 6 7.3385 -3.8062 4.6542 19 1 8.0776 -4.1200 3.9320 20 6 7.7357 -3.3881 5.9169 21 7 9.0139 -3.3628 6.2299 22 14 6.4561 -2.8615 7.1719 23 1 5.9361 -4.0583 7.8808 24 1 7.0769 -1.9358 8.1532 25 1 5.3381 -2.1718 6.4793 26 6 3.2992 -5.1610 2.0368 27 6 3.1310 -5.1040 3.5572 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6145 1.3698 -2.1454 34 1 0.8961 2.7806 -1.3001 35 1 3.0342 3.8653 -1.0562 36 1 3.2120 3.1005 -2.6683 37 1 3.2901 -0.2448 2.0970 38 1 3.8435 -2.6043 0.6080 39 1 5.3005 -2.1046 1.5001 40 1 4.0084 -2.1158 3.6166 41 1 2.5517 -2.6162 2.7244 42 1 5.7950 -5.4251 2.9907 43 1 6.1215 -3.8493 2.2302 44 1 5.3512 -3.4762 4.9480 45 1 9.2914 -3.0710 7.1123 46 1 2.4738 -4.7977 1.4246 47 1 3.8568 -6.0013 1.6233 48 1 3.5780 -5.9070 4.1434 49 1 2.1948 -4.7033 3.9459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165581355.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:52 Heat of formation + Delta-G solvation = -47.786935 kcal Electronic energy + Delta-G solvation = -26697.023340 eV Core-core repulsion = 23046.208695 eV Total energy + Delta-G solvation = -3650.814645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.89456 -38.84694 -38.11771 -35.49603 -34.46393 -34.03833 -31.15272 -30.94178 -30.49118 -29.02077 -26.30405 -24.49424 -23.59747 -22.79769 -22.40202 -21.77689 -21.36642 -20.18093 -18.77890 -17.53343 -17.13844 -17.04752 -16.40015 -15.72888 -15.27449 -15.15692 -14.94193 -14.77205 -14.52215 -14.12346 -13.87244 -13.65445 -13.42317 -13.21246 -12.88300 -12.64859 -12.44764 -12.37594 -12.03568 -11.95777 -11.73491 -11.58086 -11.48009 -11.33552 -11.21251 -11.03689 -10.95150 -10.90212 -10.73155 -10.29997 -10.21700 -9.89816 -9.63849 -9.52767 -9.46267 -8.93515 -8.83721 -7.19990 -5.74896 -3.10216 2.57570 2.83873 3.35413 3.39794 3.44516 3.73118 3.93027 4.01358 4.25004 4.41263 4.59917 4.65451 4.80408 4.82408 4.87148 4.92938 4.99216 5.03172 5.04307 5.08050 5.18140 5.25687 5.34854 5.39422 5.43156 5.48281 5.53926 5.60591 5.65368 5.66703 5.72506 5.78757 5.80543 5.83881 5.96216 6.06331 6.12612 6.28045 6.31120 6.33801 6.38521 6.51314 6.69568 6.73274 7.43815 8.02713 8.20145 8.44552 9.23850 9.95703 10.16670 11.43744 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.003390 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.980686 B = 8257.477572 C = 9089.091871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C -0.112 4.112 4 H 0.093 0.907 5 C -0.148 4.148 6 C 0.043 3.957 7 O -0.346 6.346 8 C 0.060 3.940 9 H 0.094 0.906 10 C 0.517 3.483 11 O -0.517 6.517 12 N -0.727 5.727 13 C 0.123 3.877 14 C -0.088 4.088 15 C -0.127 4.127 16 C 0.191 3.809 17 N -0.750 5.750 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.280 1.280 26 C -0.171 4.171 27 C -0.169 4.169 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.399 0.601 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.036 0.964 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.256 9.922 -12.853 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.131 4.131 4 H 0.111 0.889 5 C -0.186 4.186 6 C -0.034 4.034 7 O -0.263 6.263 8 C -0.001 4.001 9 H 0.111 0.889 10 C 0.302 3.698 11 O -0.391 6.391 12 N -0.382 5.382 13 C 0.000 4.000 14 C -0.126 4.126 15 C -0.128 4.128 16 C 0.064 3.936 17 N -0.396 5.396 18 C -0.372 4.372 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.716 3.284 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.206 1.206 26 C -0.209 4.209 27 C -0.206 4.206 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.234 0.766 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.054 0.946 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.257 9.485 -13.615 26.967 hybrid contribution -1.224 0.714 1.528 2.084 sum -22.481 10.199 -12.088 27.487 Atomic orbital electron populations 1.21753 0.95282 1.01872 1.01681 1.22111 0.96531 0.94878 1.04188 1.22568 0.93109 0.98351 0.99046 0.88870 1.23238 0.98565 0.99872 0.96901 1.23640 0.86300 0.93243 1.00198 1.89036 1.37566 1.61023 1.38696 1.22744 0.93674 0.92960 0.90735 0.88853 1.20234 0.80358 0.87062 0.82123 1.90739 1.35589 1.71455 1.41353 1.46140 1.58243 1.13351 1.20435 1.21382 1.01160 0.79518 0.97916 1.21222 0.99455 0.94260 0.97688 1.21637 0.95277 0.90781 1.05078 1.20177 0.87775 0.96647 0.88965 1.42593 1.05364 1.75377 1.16227 1.19074 0.82556 1.37502 0.98079 0.89259 1.24678 0.95632 1.01677 0.97169 1.69703 1.13449 1.53834 1.21283 0.86559 0.81371 0.78372 0.82120 1.21040 1.21856 1.20597 1.22983 1.02483 1.01504 0.93937 1.22991 1.00439 1.02391 0.94806 0.92661 0.92835 0.92522 0.89533 0.91408 0.90071 0.89879 0.91853 0.88558 0.76598 0.91384 0.90396 0.90320 0.91884 0.95688 0.94565 0.80714 0.93083 0.89164 0.88703 0.88452 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.79 37.16 0.36 -0.58 16 2 C -0.14 -1.12 4.15 -26.73 -0.11 -1.23 16 3 C -0.11 -0.84 3.04 -89.09 -0.27 -1.11 16 4 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 5 C -0.15 -1.01 6.03 -24.72 -0.15 -1.16 16 6 C 0.04 0.35 7.72 38.21 0.29 0.64 16 7 O -0.35 -4.46 10.74 -54.81 -0.59 -5.05 16 8 C 0.06 0.65 3.85 -27.31 -0.11 0.55 16 9 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 10 C 0.52 7.18 5.69 -10.99 -0.06 7.12 16 11 O -0.52 -9.73 16.53 -14.02 -0.23 -9.96 16 12 N -0.73 -8.49 3.56 -60.29 -0.21 -8.70 16 13 C 0.12 1.67 5.51 -4.04 -0.02 1.65 16 14 C -0.09 -1.14 5.15 -26.73 -0.14 -1.27 16 15 C -0.13 -1.85 1.53 -154.50 -0.24 -2.09 16 16 C 0.19 3.68 5.93 -4.04 -0.02 3.66 16 17 N -0.75 -17.62 5.25 -59.91 -0.31 -17.93 16 18 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 19 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 20 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 21 N -0.93 -29.67 13.97 55.49 0.78 -28.89 16 22 Si 0.89 22.08 27.65 -169.99 -4.70 17.38 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.47 6.65 56.52 0.38 -6.10 16 26 C -0.17 -2.08 9.94 -26.69 -0.27 -2.34 16 27 C -0.17 -2.22 9.94 -26.69 -0.27 -2.49 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.31 7.63 -51.93 -0.40 -0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.70 4.93 -51.93 -0.26 0.45 16 32 H 0.07 0.69 7.70 -51.93 -0.40 0.30 16 33 H 0.08 0.61 7.77 -51.93 -0.40 0.21 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.40 3.50 7.77 -40.82 -0.32 3.18 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.32 6.98 -51.93 -0.36 0.96 16 40 H 0.08 1.14 7.81 -51.92 -0.41 0.74 16 41 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 42 H 0.03 0.50 8.09 -51.93 -0.42 0.08 16 43 H 0.04 0.73 6.96 -51.93 -0.36 0.37 16 44 H 0.36 8.21 5.37 -40.82 -0.22 8.00 16 45 H 0.26 7.82 8.31 -40.82 -0.34 7.49 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 49 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -35.36 385.97 -9.32 -44.67 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -8.62 Total: 8.34 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.24 Total: -5.68 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.25 Total: -55.52 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.82 Total: -15.01 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.70 Total: 17.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.36 -9.32 -44.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165581355.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.113 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds