Wall clock time and date at job start Tue Mar 31 2020 10:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47087 * 2 1 4 4 H 1.09000 * 110.43390 * 52.44791 * 3 2 1 5 5 C 1.54817 * 110.48605 * 289.76674 * 3 2 1 6 6 C 1.54998 * 102.09136 * 220.44200 * 5 3 2 7 7 O 1.44386 * 103.48994 * 37.02319 * 6 5 3 8 8 C 1.43748 * 106.97429 * 319.93787 * 7 6 5 9 9 H 1.08997 * 110.00576 * 267.01942 * 8 7 6 10 10 C 1.50705 * 109.87755 * 145.93670 * 8 7 6 11 11 O 1.21287 * 119.99701 * 357.17052 * 10 8 7 12 12 N 1.34771 * 120.00063 * 177.16943 * 10 8 7 13 13 C 1.46497 * 120.00136 * 174.91550 * 12 10 8 14 14 C 1.53001 * 109.47117 * 184.48059 * 13 12 10 15 15 C 1.52997 * 109.46860 * 180.02562 * 14 13 12 16 16 C 1.53000 * 115.55610 * 65.26598 * 15 14 13 17 17 N 1.46498 * 109.46950 * 65.69693 * 16 15 14 18 18 C 1.36940 * 119.99831 * 185.60733 * 17 16 15 19 19 H 1.07998 * 120.00074 * 4.63074 * 18 17 16 20 20 C 1.38812 * 119.99766 * 184.62932 * 18 17 16 21 21 N 1.31624 * 119.99761 * 180.60094 * 20 18 17 22 22 Si 1.86802 * 120.00146 * 0.60570 * 20 18 17 23 23 H 1.48505 * 109.47088 * 84.70218 * 22 20 18 24 24 H 1.48502 * 109.47007 * 204.69935 * 22 20 18 25 25 H 1.48498 * 109.47170 * 324.70538 * 22 20 18 26 26 C 1.53007 * 117.49659 * 279.59365 * 15 14 13 27 27 C 1.53002 * 117.49526 * 210.93777 * 15 14 13 28 28 H 1.08993 * 109.47183 * 300.00391 * 1 2 3 29 29 H 1.09003 * 109.46948 * 60.00002 * 1 2 3 30 30 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47237 * 119.99301 * 2 1 3 32 32 H 1.08996 * 109.47457 * 240.00052 * 2 1 3 33 33 H 1.08996 * 110.90525 * 338.64199 * 5 3 2 34 34 H 1.09000 * 110.90839 * 102.24464 * 5 3 2 35 35 H 1.09002 * 110.61577 * 278.52259 * 6 5 3 36 36 H 1.08997 * 110.61555 * 155.52029 * 6 5 3 37 37 H 0.97003 * 119.99811 * 354.91736 * 12 10 8 38 38 H 1.09004 * 109.46766 * 304.47994 * 13 12 10 39 39 H 1.08997 * 109.46943 * 64.47971 * 13 12 10 40 40 H 1.09008 * 109.46605 * 300.02390 * 14 13 12 41 41 H 1.08994 * 109.47076 * 60.02403 * 14 13 12 42 42 H 1.08996 * 109.47307 * 185.69471 * 16 15 14 43 43 H 1.09002 * 109.46887 * 305.69695 * 16 15 14 44 44 H 0.97000 * 119.99982 * 5.60481 * 17 16 15 45 45 H 0.96994 * 119.99764 * 180.02562 * 21 20 18 46 46 H 1.08997 * 117.49648 * 0.02562 * 26 15 14 47 47 H 1.08998 * 117.50105 * 145.02031 * 26 15 14 48 48 H 1.09006 * 117.49950 * 214.97409 * 27 15 14 49 49 H 1.08998 * 117.49847 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5800 2.0088 0.8098 5 6 1.7582 2.1168 -1.3648 6 6 3.0603 2.9231 -1.6036 7 8 4.0921 2.0593 -1.0801 8 6 3.5756 1.4718 0.1259 9 1 3.8655 2.0731 0.9875 10 6 4.1039 0.0687 0.2793 11 8 4.8096 -0.4112 -0.5825 12 7 3.7924 -0.6527 1.3743 13 6 4.2121 -2.0527 1.4729 14 6 3.6401 -2.6678 2.7518 15 6 4.0790 -4.1298 2.8551 16 6 5.5819 -4.3569 3.0298 17 7 6.0095 -3.8208 4.3244 18 6 7.3385 -3.8062 4.6542 19 1 8.0776 -4.1200 3.9320 20 6 7.7357 -3.3881 5.9169 21 7 9.0139 -3.3628 6.2299 22 14 6.4561 -2.8615 7.1719 23 1 5.9361 -4.0583 7.8808 24 1 7.0769 -1.9358 8.1532 25 1 5.3381 -2.1718 6.4793 26 6 3.2992 -5.1610 2.0368 27 6 3.1310 -5.1040 3.5572 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6145 1.3698 -2.1454 34 1 0.8961 2.7806 -1.3001 35 1 3.0342 3.8653 -1.0562 36 1 3.2120 3.1005 -2.6683 37 1 3.2901 -0.2448 2.0970 38 1 3.8435 -2.6043 0.6080 39 1 5.3005 -2.1046 1.5001 40 1 4.0084 -2.1158 3.6166 41 1 2.5517 -2.6162 2.7244 42 1 5.7950 -5.4251 2.9907 43 1 6.1215 -3.8493 2.2302 44 1 5.3512 -3.4762 4.9480 45 1 9.2914 -3.0710 7.1123 46 1 2.4738 -4.7977 1.4246 47 1 3.8568 -6.0013 1.6233 48 1 3.5780 -5.9070 4.1434 49 1 2.1948 -4.7033 3.9459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165581355.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:51 Heat of formation + Delta-G solvation = -71.617076 kcal Electronic energy + Delta-G solvation = -26698.056692 eV Core-core repulsion = 23046.208695 eV Total energy + Delta-G solvation = -3651.847997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.77880 -39.89641 -39.21361 -36.47715 -35.98383 -35.29123 -33.23211 -31.88543 -31.15805 -29.85718 -28.08870 -25.33711 -24.38107 -24.25707 -23.49520 -22.94646 -22.23044 -21.09593 -20.32037 -19.20312 -18.11824 -17.78109 -17.41151 -16.73906 -16.61520 -16.31426 -16.19703 -15.79117 -15.45533 -15.31619 -15.20361 -14.75093 -14.54316 -14.32630 -14.22016 -14.03280 -13.51579 -13.47882 -13.11274 -13.05890 -12.83807 -12.57846 -12.55906 -12.29540 -12.22340 -12.18807 -12.08505 -11.90436 -11.82202 -11.62040 -11.56473 -11.15231 -11.08594 -10.95005 -10.66033 -10.48210 -9.98536 -9.29155 -8.03585 -5.37567 1.35594 1.42288 1.49125 1.52386 1.90403 2.48365 2.83164 3.01697 3.27243 3.37228 3.58414 3.69043 3.70664 3.80710 3.91453 3.98283 4.04138 4.11600 4.21527 4.27071 4.39266 4.41199 4.43646 4.47999 4.55280 4.61150 4.74143 4.81440 4.85083 4.88214 4.91604 4.95141 4.99042 5.09197 5.12837 5.14197 5.21541 5.25091 5.26891 5.31052 5.35443 5.40035 5.44806 5.74090 5.79523 6.20370 6.49822 7.07551 7.18990 7.82599 8.05779 9.18483 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.003390 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.980686 B = 8257.477572 C = 9089.091871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C -0.104 4.104 4 H 0.128 0.872 5 C -0.142 4.142 6 C 0.034 3.966 7 O -0.390 6.390 8 C 0.058 3.942 9 H 0.115 0.885 10 C 0.512 3.488 11 O -0.579 6.579 12 N -0.710 5.710 13 C 0.130 3.870 14 C -0.075 4.075 15 C -0.148 4.148 16 C 0.190 3.810 17 N -0.747 5.747 18 C -0.239 4.239 19 H 0.047 0.953 20 C -0.066 4.066 21 N -0.987 5.987 22 Si 0.961 3.039 23 H -0.275 1.275 24 H -0.296 1.296 25 H -0.246 1.246 26 C -0.151 4.151 27 C -0.160 4.160 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.417 0.583 38 H 0.068 0.932 39 H 0.033 0.967 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.016 0.984 43 H 0.017 0.983 44 H 0.368 0.632 45 H 0.258 0.742 46 H 0.118 0.882 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.234 11.398 -11.813 31.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C -0.123 4.123 4 H 0.146 0.854 5 C -0.180 4.180 6 C -0.041 4.041 7 O -0.309 6.309 8 C -0.003 4.003 9 H 0.132 0.868 10 C 0.299 3.701 11 O -0.458 6.458 12 N -0.365 5.365 13 C 0.007 3.993 14 C -0.113 4.113 15 C -0.149 4.149 16 C 0.064 3.936 17 N -0.392 5.392 18 C -0.370 4.370 19 H 0.065 0.935 20 C -0.257 4.257 21 N -0.637 5.637 22 Si 0.788 3.212 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.170 1.170 26 C -0.189 4.189 27 C -0.197 4.197 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.256 0.744 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.034 0.966 43 H 0.035 0.965 44 H 0.202 0.798 45 H 0.067 0.933 46 H 0.136 0.864 47 H 0.109 0.891 48 H 0.101 0.899 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -26.308 10.964 -12.581 31.155 hybrid contribution 0.438 0.190 1.074 1.175 sum -25.870 11.154 -11.508 30.431 Atomic orbital electron populations 1.21718 0.93537 1.02112 1.02713 1.22058 0.97949 0.94933 1.02557 1.22649 0.90485 0.98529 1.00595 0.85438 1.23236 0.98917 0.99781 0.96052 1.23912 0.85913 0.93617 1.00674 1.88996 1.40012 1.62096 1.39756 1.22948 0.95828 0.90604 0.90921 0.86792 1.21014 0.79245 0.88373 0.81481 1.90704 1.38475 1.73023 1.43562 1.45994 1.57501 1.12571 1.20477 1.21163 0.98547 0.80794 0.98819 1.21138 1.01644 0.92481 0.96017 1.21452 0.92125 0.92795 1.08512 1.20217 0.91657 0.95357 0.86413 1.42499 1.03427 1.75494 1.17817 1.19022 0.84217 1.36407 0.97327 0.93523 1.25607 0.98112 1.02336 0.99668 1.69913 1.16273 1.55640 1.21921 0.85336 0.79037 0.78205 0.78662 1.20070 1.22317 1.17038 1.23081 1.01999 0.99823 0.93948 1.23075 1.00489 1.00852 0.95298 0.90978 0.92399 0.92761 0.89629 0.94553 0.91470 0.86778 0.89673 0.88296 0.74449 0.91363 0.94876 0.91703 0.87765 0.96597 0.96502 0.79813 0.93301 0.86374 0.89071 0.89890 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.79 71.98 0.70 -0.61 16 2 C -0.14 -1.87 4.15 30.60 0.13 -1.75 16 3 C -0.10 -1.24 3.04 -9.80 -0.03 -1.27 16 4 H 0.13 0.72 8.14 -2.39 -0.02 0.71 16 5 C -0.14 -1.57 6.03 31.90 0.19 -1.38 16 6 C 0.03 0.51 7.72 72.67 0.56 1.07 16 7 O -0.39 -10.04 10.74 -130.26 -1.40 -11.44 16 8 C 0.06 1.18 3.85 30.22 0.12 1.29 16 9 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 10 C 0.51 14.34 5.69 87.66 0.50 14.84 16 11 O -0.58 -23.04 16.53 15.67 0.26 -22.78 16 12 N -0.71 -15.90 3.56 -463.06 -1.65 -17.55 16 13 C 0.13 3.52 5.51 86.38 0.48 3.99 16 14 C -0.08 -1.74 5.15 30.59 0.16 -1.58 16 15 C -0.15 -4.05 1.53 -52.18 -0.08 -4.13 16 16 C 0.19 7.47 5.93 86.38 0.51 7.98 16 17 N -0.75 -35.29 5.25 -343.46 -1.80 -37.10 16 18 C -0.24 -14.12 10.47 84.03 0.88 -13.24 16 19 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 21 N -0.99 -64.85 13.97 21.65 0.30 -64.55 16 22 Si 0.96 45.31 27.65 68.60 1.90 47.21 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.25 -10.14 6.65 99.48 0.66 -9.48 16 26 C -0.15 -3.21 9.94 30.62 0.30 -2.91 16 27 C -0.16 -3.65 9.94 30.62 0.30 -3.35 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.49 7.63 -2.39 -0.02 0.47 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.09 1.14 4.93 -2.39 -0.01 1.13 16 32 H 0.04 0.73 7.70 -2.39 -0.02 0.71 16 33 H 0.07 0.93 7.77 -2.39 -0.02 0.92 16 34 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.42 6.21 7.77 -92.71 -0.72 5.48 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.03 1.19 6.98 -2.39 -0.02 1.17 16 40 H 0.06 1.70 7.81 -2.38 -0.02 1.68 16 41 H 0.10 1.61 8.09 -2.39 -0.02 1.59 16 42 H 0.02 0.66 8.09 -2.39 -0.02 0.64 16 43 H 0.02 0.73 6.96 -2.39 -0.02 0.71 16 44 H 0.37 16.16 5.37 -92.71 -0.50 15.66 16 45 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 46 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 49 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -83.45 385.97 2.47 -80.98 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -0.33 Total: 29.79 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 5.19 Total: -4.56 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -3.15 Total: -119.20 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.14 Total: -34.22 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Total: -83.45 2.47 -80.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165581355.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.360 kcal (2) G-P(sol) polarization free energy of solvation -83.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds