Wall clock time and date at job start Tue Mar 31 2020 09:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47481 * 2 1 4 4 C 1.52999 * 109.46997 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.46728 * 180.02562 * 4 3 2 6 6 C 1.42899 * 113.99778 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47145 * 29.99590 * 6 5 4 8 8 C 1.52996 * 109.47031 * 269.99750 * 6 5 4 9 9 C 1.50701 * 109.46888 * 149.99727 * 6 5 4 10 10 O 1.21279 * 120.00036 * 5.00016 * 9 6 5 11 11 N 1.34775 * 119.99744 * 184.99365 * 9 6 5 12 12 C 1.47354 * 125.53396 * 359.70058 * 11 9 6 13 13 C 1.55157 * 104.78227 * 156.46089 * 12 11 9 14 14 C 1.54801 * 101.39829 * 37.53939 * 13 12 11 15 15 H 1.09000 * 113.15186 * 85.43731 * 14 13 12 16 16 C 1.53259 * 109.74889 * 212.11465 * 14 13 12 17 17 N 1.46583 * 108.15879 * 95.76115 * 16 14 13 18 18 C 1.36936 * 125.30416 * 177.88636 * 17 16 14 19 19 H 1.07997 * 120.00563 * 0.02562 * 18 17 16 20 20 C 1.38820 * 119.99736 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99905 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99831 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47339 * 60.00351 * 22 20 18 24 24 H 1.48506 * 109.47302 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47527 * 300.00120 * 22 20 18 26 26 C 1.46609 * 109.38805 * 357.89135 * 17 16 14 27 27 C 1.47219 * 125.53039 * 179.97438 * 11 9 6 28 28 H 1.09000 * 112.28196 * 56.23072 * 27 11 9 29 29 H 1.08996 * 109.47340 * 59.99477 * 1 2 3 30 30 H 1.08992 * 109.47718 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46672 * 300.00239 * 1 2 3 32 32 H 1.09000 * 109.46925 * 240.00215 * 2 1 3 33 33 H 1.08996 * 109.47340 * 120.00523 * 2 1 3 34 34 H 1.09000 * 109.46866 * 60.00179 * 3 2 1 35 35 H 1.09001 * 109.46611 * 300.00296 * 3 2 1 36 36 H 1.09000 * 109.47486 * 60.00167 * 4 3 2 37 37 H 1.09001 * 109.47362 * 299.99445 * 4 3 2 38 38 H 1.09001 * 109.47120 * 180.02562 * 8 6 5 39 39 H 1.09003 * 109.47460 * 300.00074 * 8 6 5 40 40 H 1.08997 * 109.47597 * 59.99980 * 8 6 5 41 41 H 1.08996 * 110.35430 * 275.41714 * 12 11 9 42 42 H 1.09005 * 110.34979 * 37.70231 * 12 11 9 43 43 H 1.09001 * 111.22430 * 279.45168 * 13 12 11 44 44 H 1.09000 * 110.94613 * 155.50766 * 13 12 11 45 45 H 1.09004 * 109.73481 * 215.44733 * 16 14 13 46 46 H 1.08996 * 109.73829 * 336.09547 * 16 14 13 47 47 H 0.97001 * 119.99678 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.91111 * 258.45126 * 26 17 16 49 49 H 1.09004 * 109.91240 * 137.16967 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.4709 2.9025 0.0000 7 1 5.9034 2.0441 -0.5141 8 6 5.9793 2.9421 1.4425 9 6 5.8746 4.1690 -0.7099 10 8 5.0261 4.9476 -1.0905 11 7 7.1784 4.4366 -0.9217 12 6 8.3060 3.5833 -0.5072 13 6 9.4665 3.9696 -1.4620 14 6 9.2542 5.4968 -1.5993 15 1 9.7286 6.0688 -0.8019 16 6 9.6915 5.9570 -2.9942 17 7 8.5043 6.0047 -3.8526 18 6 8.4890 6.4107 -5.1603 19 1 9.4038 6.7295 -5.6376 20 6 7.2974 6.4124 -5.8726 21 7 6.1824 6.0244 -5.2909 22 14 7.2767 6.9656 -7.6567 23 1 8.1714 6.0910 -8.4566 24 1 5.8924 6.8754 -8.1868 25 1 7.7495 8.3705 -7.7450 26 6 7.3358 5.5501 -3.0928 27 6 7.7075 5.6315 -1.5996 28 1 7.3706 6.5560 -1.1305 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9330 0.9287 -0.8909 37 1 3.9337 0.9285 0.8892 38 1 7.0659 3.0286 1.4426 39 1 5.5469 3.8005 1.9567 40 1 5.6874 2.0261 1.9560 41 1 8.5781 3.7908 0.5276 42 1 8.0498 2.5309 -0.6290 43 1 9.3657 3.4725 -2.4268 44 1 10.4332 3.7483 -1.0097 45 1 10.1400 6.9485 -2.9309 46 1 10.4141 5.2519 -3.4048 47 1 5.3499 6.0253 -5.7887 48 1 7.0967 4.5207 -3.3601 49 1 6.4837 6.1976 -3.2994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187168255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:48 Heat of formation + Delta-G solvation = -56.367409 kcal Electronic energy + Delta-G solvation = -26993.334132 eV Core-core repulsion = 23342.147411 eV Total energy + Delta-G solvation = -3651.186722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.22801 -38.61868 -37.19470 -35.12834 -34.94811 -32.51326 -31.35050 -30.59587 -29.06001 -28.41452 -26.78282 -24.70809 -24.32761 -23.31133 -22.16122 -21.31868 -20.48042 -19.67667 -18.66495 -17.11903 -16.83472 -16.53298 -16.08186 -15.58567 -15.25055 -14.78217 -14.52142 -14.20070 -14.00577 -13.66389 -13.43839 -13.34315 -13.15722 -12.69619 -12.47780 -12.37477 -12.34446 -12.10647 -11.90873 -11.78686 -11.51115 -11.42425 -11.29322 -11.13494 -11.00900 -10.94708 -10.81956 -10.74620 -10.43051 -10.16872 -10.01232 -9.81534 -9.72440 -9.66037 -9.10445 -8.55150 -8.14827 -6.77823 -5.57754 -3.00533 2.96420 3.05353 3.44708 3.48417 3.51247 3.84669 4.53107 4.56726 4.72978 4.77854 4.81509 4.88906 4.90493 4.99727 5.02857 5.12181 5.22003 5.24616 5.40423 5.42468 5.51481 5.53023 5.57850 5.61447 5.64074 5.64570 5.69373 5.72175 5.82502 5.92282 5.94401 5.99605 6.04186 6.07855 6.15006 6.24375 6.35256 6.55354 6.62756 6.69082 6.90234 7.13626 7.59501 7.68327 7.93491 8.02877 8.42758 8.65310 9.28855 9.89885 10.52027 11.46230 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.003699 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.367686 B = 7568.818283 C = 9305.167167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.060 3.940 5 O -0.356 6.356 6 C 0.077 3.923 7 H 0.081 0.919 8 C -0.172 4.172 9 C 0.525 3.475 10 O -0.505 6.505 11 N -0.608 5.608 12 C 0.099 3.901 13 C -0.122 4.122 14 C -0.109 4.109 15 H 0.088 0.912 16 C 0.145 3.855 17 N -0.602 5.602 18 C -0.234 4.234 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.913 5.913 22 Si 0.913 3.087 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.166 3.834 27 C 0.116 3.884 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.023 0.977 46 H 0.025 0.975 47 H 0.254 0.746 48 H 0.019 0.981 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 -12.602 15.819 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.157 4.157 4 C -0.017 4.017 5 O -0.274 6.274 6 C 0.015 3.985 7 H 0.099 0.901 8 C -0.229 4.229 9 C 0.311 3.689 10 O -0.378 6.378 11 N -0.345 5.345 12 C -0.024 4.024 13 C -0.160 4.160 14 C -0.129 4.129 15 H 0.106 0.894 16 C 0.019 3.981 17 N -0.329 5.329 18 C -0.362 4.362 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.560 5.560 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.040 3.960 27 C 0.013 3.987 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.041 0.959 46 H 0.043 0.957 47 H 0.064 0.936 48 H 0.037 0.963 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.114 -12.014 15.447 19.600 hybrid contribution 0.242 -0.103 -0.909 0.946 sum -0.872 -12.117 14.538 18.945 Atomic orbital electron populations 1.21751 0.95441 1.01571 1.02160 1.21438 0.96255 0.96103 1.02077 1.21543 0.93301 0.97094 1.03784 1.22620 0.95418 0.83770 0.99897 1.88048 1.18539 1.25897 1.94897 1.21808 0.83391 0.96867 0.96392 0.90113 1.22282 1.02039 1.03335 0.95265 1.19850 0.81316 0.87651 0.80068 1.90770 1.48949 1.48677 1.49383 1.48474 1.04389 1.23197 1.58405 1.22430 0.87167 0.94709 0.98078 1.22835 0.97051 0.95976 1.00121 1.22868 0.95327 0.95759 0.98935 0.89421 1.20984 0.91319 0.97559 0.88268 1.44164 1.02244 1.77320 1.09122 1.18967 0.94356 1.37495 0.85383 0.90439 1.24861 0.95596 1.01425 0.98489 1.69921 0.98447 1.52417 1.35211 0.86193 0.76623 0.78441 0.84416 1.21245 1.21577 1.21123 1.21646 0.91939 0.99204 0.83181 1.22956 0.92055 0.86910 0.96798 0.89989 0.92456 0.92723 0.92645 0.91801 0.92002 0.91089 0.90707 0.93246 0.93489 0.90685 0.91194 0.91603 0.91552 0.91284 0.89872 0.90368 0.95899 0.95735 0.93553 0.96305 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.15 0.37 -0.80 16 2 C -0.12 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.12 -1.28 5.58 -26.73 -0.15 -1.43 16 4 C 0.06 0.69 5.75 37.16 0.21 0.91 16 5 O -0.36 -5.66 9.53 -55.09 -0.52 -6.18 16 6 C 0.08 1.11 2.48 -27.88 -0.07 1.04 16 7 H 0.08 1.00 7.26 -51.93 -0.38 0.63 16 8 C -0.17 -1.84 9.39 37.16 0.35 -1.49 16 9 C 0.53 10.07 7.06 -10.99 -0.08 9.99 16 10 O -0.50 -12.37 16.62 -14.30 -0.24 -12.61 16 11 N -0.61 -10.65 2.85 -161.56 -0.46 -11.11 16 12 C 0.10 1.25 5.34 -2.43 -0.01 1.23 16 13 C -0.12 -1.66 6.25 -24.64 -0.15 -1.81 16 14 C -0.11 -1.81 3.91 -88.34 -0.35 -2.15 16 15 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 16 C 0.15 2.96 6.65 -3.86 -0.03 2.94 16 17 N -0.60 -15.76 3.37 -172.25 -0.58 -16.34 16 18 C -0.23 -6.67 10.25 -15.06 -0.15 -6.83 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 21 N -0.91 -28.29 10.17 55.49 0.56 -27.73 16 22 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.17 4.31 4.80 -3.41 -0.02 4.29 16 27 C 0.12 2.35 3.87 -65.77 -0.25 2.09 16 28 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.05 0.44 7.87 -51.93 -0.41 0.03 16 38 H 0.07 0.68 5.52 -51.93 -0.29 0.40 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 41 H 0.07 0.66 7.12 -51.93 -0.37 0.29 16 42 H 0.07 0.74 7.33 -51.93 -0.38 0.36 16 43 H 0.08 1.33 7.88 -51.93 -0.41 0.92 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 47 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 48 H 0.02 0.54 7.94 -51.93 -0.41 0.13 16 49 H 0.10 2.94 6.22 -51.93 -0.32 2.62 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -35.44 380.75 -9.92 -45.37 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -8.82 Total: -1.38 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.58 Total: 6.53 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.48 Total: -55.18 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.76 Total: -18.79 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.44 -9.92 -45.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187168255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.998 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds