Wall clock time and date at job start Tue Mar 31 2020 09:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47481 * 2 1 4 4 C 1.52999 * 109.46997 * 180.02562 * 3 2 1 5 5 O 1.42905 * 109.46728 * 180.02562 * 4 3 2 6 6 C 1.42899 * 113.99778 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47145 * 29.99590 * 6 5 4 8 8 C 1.52996 * 109.47031 * 269.99750 * 6 5 4 9 9 C 1.50701 * 109.46888 * 149.99727 * 6 5 4 10 10 O 1.21279 * 120.00036 * 5.00016 * 9 6 5 11 11 N 1.34775 * 119.99744 * 184.99365 * 9 6 5 12 12 C 1.47354 * 125.53396 * 359.70058 * 11 9 6 13 13 C 1.55157 * 104.78227 * 156.46089 * 12 11 9 14 14 C 1.54801 * 101.39829 * 37.53939 * 13 12 11 15 15 H 1.09000 * 113.15186 * 85.43731 * 14 13 12 16 16 C 1.53259 * 109.74889 * 212.11465 * 14 13 12 17 17 N 1.46583 * 108.15879 * 95.76115 * 16 14 13 18 18 C 1.36936 * 125.30416 * 177.88636 * 17 16 14 19 19 H 1.07997 * 120.00563 * 0.02562 * 18 17 16 20 20 C 1.38820 * 119.99736 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99905 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99831 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47339 * 60.00351 * 22 20 18 24 24 H 1.48506 * 109.47302 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47527 * 300.00120 * 22 20 18 26 26 C 1.46609 * 109.38805 * 357.89135 * 17 16 14 27 27 C 1.47219 * 125.53039 * 179.97438 * 11 9 6 28 28 H 1.09000 * 112.28196 * 56.23072 * 27 11 9 29 29 H 1.08996 * 109.47340 * 59.99477 * 1 2 3 30 30 H 1.08992 * 109.47718 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46672 * 300.00239 * 1 2 3 32 32 H 1.09000 * 109.46925 * 240.00215 * 2 1 3 33 33 H 1.08996 * 109.47340 * 120.00523 * 2 1 3 34 34 H 1.09000 * 109.46866 * 60.00179 * 3 2 1 35 35 H 1.09001 * 109.46611 * 300.00296 * 3 2 1 36 36 H 1.09000 * 109.47486 * 60.00167 * 4 3 2 37 37 H 1.09001 * 109.47362 * 299.99445 * 4 3 2 38 38 H 1.09001 * 109.47120 * 180.02562 * 8 6 5 39 39 H 1.09003 * 109.47460 * 300.00074 * 8 6 5 40 40 H 1.08997 * 109.47597 * 59.99980 * 8 6 5 41 41 H 1.08996 * 110.35430 * 275.41714 * 12 11 9 42 42 H 1.09005 * 110.34979 * 37.70231 * 12 11 9 43 43 H 1.09001 * 111.22430 * 279.45168 * 13 12 11 44 44 H 1.09000 * 110.94613 * 155.50766 * 13 12 11 45 45 H 1.09004 * 109.73481 * 215.44733 * 16 14 13 46 46 H 1.08996 * 109.73829 * 336.09547 * 16 14 13 47 47 H 0.97001 * 119.99678 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.91111 * 258.45126 * 26 17 16 49 49 H 1.09004 * 109.91240 * 137.16967 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.4709 2.9025 0.0000 7 1 5.9034 2.0441 -0.5141 8 6 5.9793 2.9421 1.4425 9 6 5.8746 4.1690 -0.7099 10 8 5.0261 4.9476 -1.0905 11 7 7.1784 4.4366 -0.9217 12 6 8.3060 3.5833 -0.5072 13 6 9.4665 3.9696 -1.4620 14 6 9.2542 5.4968 -1.5993 15 1 9.7286 6.0688 -0.8019 16 6 9.6915 5.9570 -2.9942 17 7 8.5043 6.0047 -3.8526 18 6 8.4890 6.4107 -5.1603 19 1 9.4038 6.7295 -5.6376 20 6 7.2974 6.4124 -5.8726 21 7 6.1824 6.0244 -5.2909 22 14 7.2767 6.9656 -7.6567 23 1 8.1714 6.0910 -8.4566 24 1 5.8924 6.8754 -8.1868 25 1 7.7495 8.3705 -7.7450 26 6 7.3358 5.5501 -3.0928 27 6 7.7075 5.6315 -1.5996 28 1 7.3706 6.5560 -1.1305 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9330 0.9287 -0.8909 37 1 3.9337 0.9285 0.8892 38 1 7.0659 3.0286 1.4426 39 1 5.5469 3.8005 1.9567 40 1 5.6874 2.0261 1.9560 41 1 8.5781 3.7908 0.5276 42 1 8.0498 2.5309 -0.6290 43 1 9.3657 3.4725 -2.4268 44 1 10.4332 3.7483 -1.0097 45 1 10.1400 6.9485 -2.9309 46 1 10.4141 5.2519 -3.4048 47 1 5.3499 6.0253 -5.7887 48 1 7.0967 4.5207 -3.3601 49 1 6.4837 6.1976 -3.2994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187168255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:47 Heat of formation + Delta-G solvation = -79.750023 kcal Electronic energy + Delta-G solvation = -26994.348079 eV Core-core repulsion = 23342.147411 eV Total energy + Delta-G solvation = -3652.200668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.65114 -39.92717 -38.56636 -36.69946 -35.94280 -34.25993 -32.68426 -32.06190 -30.30088 -29.71452 -28.38864 -26.53444 -25.61054 -24.24507 -23.30587 -22.35138 -22.07128 -21.08492 -20.14079 -18.94269 -18.23330 -17.84926 -17.07772 -17.02872 -16.73252 -16.31022 -15.84260 -15.44410 -15.33744 -15.07652 -14.71555 -14.51656 -14.22508 -14.12160 -13.81091 -13.71900 -13.51755 -13.24221 -13.17108 -13.12986 -13.00274 -12.75095 -12.63616 -12.55329 -12.29572 -12.22192 -11.97230 -11.88566 -11.83543 -11.70817 -11.55429 -11.48488 -11.39685 -10.95378 -10.75058 -10.44738 -9.63186 -8.93396 -7.80574 -5.26507 1.40684 1.45801 1.52647 1.60726 1.72700 2.46650 2.78961 3.29130 3.34917 3.61675 3.65482 3.82449 3.85415 3.93037 4.00205 4.04412 4.13974 4.19441 4.32619 4.35148 4.39585 4.41195 4.47528 4.54208 4.65819 4.68420 4.72555 4.80956 4.85441 4.89040 4.93631 4.94778 5.02629 5.11978 5.17932 5.20555 5.21797 5.22677 5.33244 5.42757 5.45161 5.49422 5.55908 5.79095 6.14146 6.22980 6.60316 7.04797 7.21781 7.76981 8.37407 9.21277 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.003699 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.367686 B = 7568.818283 C = 9305.167167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.120 4.120 4 C 0.055 3.945 5 O -0.395 6.395 6 C 0.082 3.918 7 H 0.105 0.895 8 C -0.161 4.161 9 C 0.510 3.490 10 O -0.580 6.580 11 N -0.607 5.607 12 C 0.094 3.906 13 C -0.114 4.114 14 C -0.091 4.091 15 H 0.132 0.868 16 C 0.136 3.864 17 N -0.625 5.625 18 C -0.243 4.243 19 H 0.090 0.910 20 C -0.074 4.074 21 N -0.951 5.951 22 Si 0.984 3.016 23 H -0.271 1.271 24 H -0.299 1.299 25 H -0.273 1.273 26 C 0.186 3.814 27 C 0.117 3.883 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.130 0.870 45 H 0.030 0.970 46 H 0.039 0.961 47 H 0.242 0.758 48 H -0.023 1.023 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 -14.802 18.270 23.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.158 4.158 4 C -0.021 4.021 5 O -0.314 6.314 6 C 0.022 3.978 7 H 0.122 0.878 8 C -0.218 4.218 9 C 0.298 3.702 10 O -0.458 6.458 11 N -0.341 5.341 12 C -0.027 4.027 13 C -0.152 4.152 14 C -0.110 4.110 15 H 0.150 0.850 16 C 0.011 3.989 17 N -0.351 5.351 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.266 4.266 21 N -0.600 5.600 22 Si 0.811 3.189 23 H -0.197 1.197 24 H -0.226 1.226 25 H -0.198 1.198 26 C 0.059 3.941 27 C 0.012 3.988 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.130 0.870 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.148 0.852 45 H 0.048 0.952 46 H 0.056 0.944 47 H 0.051 0.949 48 H -0.005 1.005 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.065 -14.248 17.933 22.997 hybrid contribution -0.685 0.603 -1.699 1.928 sum 1.380 -13.645 16.234 21.252 Atomic orbital electron populations 1.21771 0.95153 1.02373 1.01784 1.21414 0.96488 0.94282 1.03052 1.21575 0.93202 0.98642 1.02360 1.22857 0.95632 0.82202 1.01426 1.88018 1.19630 1.28592 1.95198 1.21927 0.83153 0.94322 0.98448 0.87785 1.22264 1.03241 1.04204 0.92096 1.21039 0.81138 0.88697 0.79281 1.90728 1.51140 1.51420 1.52559 1.48585 1.05417 1.22937 1.57180 1.22890 0.84575 0.95236 0.99985 1.22864 1.00032 0.92796 0.99482 1.22927 0.91577 0.98840 0.97697 0.85044 1.21295 0.89510 0.98424 0.89699 1.44491 1.04388 1.76995 1.09273 1.19482 0.94662 1.36245 0.86799 0.89189 1.25833 0.95292 1.02340 1.03177 1.70288 0.98737 1.54470 1.36552 0.85076 0.76150 0.78583 0.79071 1.19678 1.22604 1.19820 1.21123 0.90516 0.95033 0.87405 1.22625 0.95392 0.88060 0.92709 0.91597 0.93553 0.91283 0.92400 0.91673 0.90058 0.91249 0.93484 0.93226 0.90141 0.88256 0.92811 0.88559 0.87015 0.88685 0.92957 0.85236 0.95150 0.94353 0.94906 1.00506 0.94759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.11 -1.76 5.93 30.59 0.18 -1.58 16 3 C -0.12 -2.59 5.58 30.60 0.17 -2.42 16 4 C 0.05 1.22 5.75 71.98 0.41 1.63 16 5 O -0.40 -12.73 9.53 -129.99 -1.24 -13.97 16 6 C 0.08 2.27 2.48 29.85 0.07 2.35 16 7 H 0.10 2.33 7.26 -2.39 -0.02 2.31 16 8 C -0.16 -2.87 9.39 71.98 0.68 -2.19 16 9 C 0.51 20.14 7.06 87.66 0.62 20.76 16 10 O -0.58 -30.87 16.62 15.97 0.27 -30.60 16 11 N -0.61 -20.92 2.85 -783.44 -2.23 -23.16 16 12 C 0.09 1.93 5.34 86.96 0.46 2.40 16 13 C -0.11 -2.61 6.25 31.95 0.20 -2.41 16 14 C -0.09 -2.76 3.91 -9.32 -0.04 -2.80 16 15 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 16 C 0.14 5.36 6.65 86.45 0.58 5.94 16 17 N -0.62 -33.78 3.37 -698.86 -2.36 -36.14 16 18 C -0.24 -14.26 10.25 84.04 0.86 -13.40 16 19 H 0.09 4.91 7.83 -2.91 -0.02 4.89 16 20 C -0.07 -4.51 5.48 84.86 0.47 -4.05 16 21 N -0.95 -63.33 10.17 21.65 0.22 -63.11 16 22 Si 0.98 48.43 29.55 68.60 2.03 50.46 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 25 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 26 C 0.19 10.30 4.80 86.73 0.42 10.71 16 27 C 0.12 4.82 3.87 46.00 0.18 5.00 16 28 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 1.08 8.09 -2.39 -0.02 1.06 16 37 H 0.08 1.24 7.87 -2.39 -0.02 1.22 16 38 H 0.10 1.26 5.52 -2.39 -0.01 1.24 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.10 1.17 7.87 -2.39 -0.02 1.15 16 41 H 0.11 1.44 7.12 -2.39 -0.02 1.42 16 42 H 0.09 1.54 7.33 -2.38 -0.02 1.52 16 43 H 0.05 1.55 7.88 -2.39 -0.02 1.53 16 44 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.04 1.43 7.74 -2.39 -0.02 1.42 16 47 H 0.24 15.87 8.31 -92.71 -0.77 15.10 16 48 H -0.02 -1.43 7.94 -2.39 -0.02 -1.44 16 49 H 0.03 2.31 6.22 -2.39 -0.01 2.29 16 Total: -1.00 -89.50 380.75 3.56 -85.94 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.90 Total: 12.15 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 5.97 Total: 18.42 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -4.37 Total: -122.40 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.97 Total: -44.57 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -89.50 3.56 -85.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187168255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.194 kcal (2) G-P(sol) polarization free energy of solvation -89.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds