Wall clock time and date at job start Tue Mar 31 2020 09:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47054 * 2 1 4 4 C 1.52999 * 109.46903 * 240.00213 * 2 1 3 5 5 O 1.42899 * 109.47569 * 120.00433 * 2 1 3 6 6 C 1.42892 * 114.00108 * 59.99456 * 5 2 1 7 7 C 1.50701 * 109.47389 * 180.02562 * 6 5 2 8 8 O 1.21292 * 119.99525 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00514 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99995 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.95010 * 23.58981 * 10 9 7 12 12 C 1.53955 * 113.66165 * 252.18590 * 10 9 7 13 13 C 1.53957 * 87.29400 * 220.79907 * 12 10 9 14 14 H 1.09002 * 113.65635 * 270.26077 * 13 12 10 15 15 N 1.46493 * 113.66200 * 139.20574 * 13 12 10 16 16 C 1.36935 * 119.99854 * 107.81212 * 15 13 12 17 17 H 1.07998 * 120.00548 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99685 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00127 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99751 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47407 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47093 * 120.00378 * 20 18 16 23 23 H 1.48505 * 109.47009 * 240.00020 * 20 18 16 24 24 C 1.52904 * 86.78379 * 24.73199 * 13 12 10 25 25 C 1.52910 * 121.13510 * 209.38616 * 24 13 12 26 26 C 1.53957 * 86.78122 * 209.38051 * 25 24 13 27 27 C 1.52909 * 121.13701 * 100.82200 * 24 13 12 28 28 H 1.09007 * 109.47021 * 299.99883 * 1 2 3 29 29 H 1.08999 * 109.47692 * 60.00056 * 1 2 3 30 30 H 1.09002 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46984 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47231 * 300.00341 * 3 2 1 33 33 H 1.08998 * 109.47128 * 60.00402 * 3 2 1 34 34 H 1.09005 * 109.47389 * 299.99621 * 4 2 1 35 35 H 1.09005 * 109.47072 * 59.99849 * 4 2 1 36 36 H 1.08996 * 109.47449 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47237 * 60.00354 * 6 5 2 38 38 H 1.08997 * 109.47512 * 300.00148 * 6 5 2 39 39 H 0.97000 * 119.99275 * 0.02562 * 9 7 6 40 40 H 1.08997 * 113.57526 * 335.39851 * 12 10 9 41 41 H 1.08998 * 113.58201 * 106.19706 * 12 10 9 42 42 H 0.97002 * 120.00012 * 287.81346 * 15 13 12 43 43 H 0.97007 * 119.99662 * 179.97438 * 19 18 16 44 44 H 1.09003 * 113.66688 * 94.91189 * 25 24 13 45 45 H 1.08997 * 113.66384 * 323.85427 * 25 24 13 46 46 H 1.08998 * 113.57948 * 139.33169 * 26 25 24 47 47 H 1.09000 * 113.57875 * 270.12813 * 26 25 24 48 48 H 1.08993 * 113.65927 * 36.14497 * 27 24 13 49 49 H 1.08999 * 113.66533 * 265.08675 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.5847 -2.0355 1.2644 7 6 2.1412 -2.6445 2.5256 8 8 2.8306 -1.9776 3.2680 9 7 1.8728 -3.9300 2.8287 10 6 2.4133 -4.5217 4.0550 11 1 2.6494 -3.7789 4.8170 12 6 3.5471 -5.5328 3.8055 13 6 2.9119 -6.4054 4.9034 14 1 3.2881 -6.1920 5.9040 15 7 2.9068 -7.8359 4.5880 16 6 3.7504 -8.6863 5.2515 17 1 4.4193 -8.3025 6.0076 18 6 3.7452 -10.0420 4.9530 19 7 2.9290 -10.5100 4.0326 20 14 4.8965 -11.2020 5.8576 21 1 5.7063 -10.4325 6.8359 22 1 4.1004 -12.2308 6.5737 23 1 5.7986 -11.8648 4.8817 24 6 1.5938 -5.7010 4.5803 25 6 0.5200 -5.5030 5.6508 26 6 -0.5083 -5.5605 4.5065 27 6 0.5299 -6.3736 3.7121 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6765 -0.2073 -2.1393 36 1 3.1299 -0.7209 -1.2496 37 1 1.9491 -2.5916 0.4006 38 1 0.4959 -2.0778 1.2907 39 1 1.3217 -4.4633 2.2347 40 1 3.5160 -5.9871 2.8152 41 1 4.5350 -5.1536 4.0670 42 1 2.3058 -8.1808 3.9091 43 1 2.9257 -11.4573 3.8238 44 1 0.5695 -4.5333 6.1461 45 1 0.4420 -6.3345 6.3512 46 1 -1.4066 -6.1254 4.7555 47 1 -0.7278 -4.5869 4.0682 48 1 0.4548 -7.4498 3.8676 49 1 0.5874 -6.0994 2.6587 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202794885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:41 Heat of formation + Delta-G solvation = -32.593205 kcal Electronic energy + Delta-G solvation = -26544.487029 eV Core-core repulsion = 22894.331234 eV Total energy + Delta-G solvation = -3650.155795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.67950 -39.60447 -38.30062 -34.91679 -34.10073 -33.66481 -32.52087 -29.98601 -28.54451 -27.76514 -27.20293 -25.52992 -24.54608 -24.02808 -22.32486 -20.45774 -20.39783 -20.19741 -18.16127 -17.40083 -17.09153 -16.47683 -16.11847 -15.93680 -15.21551 -15.16244 -14.70498 -14.56609 -14.25611 -13.74724 -13.67608 -13.33567 -13.03200 -12.85726 -12.54408 -12.46130 -12.37210 -12.15354 -12.09458 -12.06230 -11.86428 -11.58532 -11.48545 -11.31195 -11.02468 -10.91851 -10.80432 -10.72865 -10.22202 -10.07702 -9.96474 -9.85019 -9.80871 -9.60462 -9.39569 -8.83675 -8.69524 -6.97427 -5.81447 -3.09373 2.67641 2.78992 3.41339 3.47973 3.49588 3.83672 4.44239 4.49015 4.56764 4.66353 4.72938 4.78704 4.89955 4.90243 4.98144 5.03142 5.14201 5.15316 5.22051 5.26492 5.37222 5.38739 5.44440 5.50496 5.51917 5.62681 5.68967 5.84035 5.89463 5.91584 5.93392 5.99296 6.01327 6.12426 6.15824 6.24915 6.31838 6.38447 6.56613 6.61016 6.75878 6.88797 6.93845 7.08104 7.64071 7.69284 8.32156 8.37683 9.49410 10.06498 10.41495 11.41069 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023258 B = 0.002725 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.576338 B =10274.207839 C =10639.606695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.350 6.350 6 C 0.038 3.962 7 C 0.512 3.488 8 O -0.525 6.525 9 N -0.711 5.711 10 C 0.147 3.853 11 H 0.111 0.889 12 C -0.175 4.175 13 C 0.182 3.818 14 H 0.081 0.919 15 N -0.706 5.706 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.140 4.140 27 C -0.108 4.108 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.399 0.601 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.098 0.902 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.401 19.310 -9.376 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.064 3.936 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.269 6.269 6 C -0.042 4.042 7 C 0.297 3.703 8 O -0.400 6.400 9 N -0.364 5.364 10 C 0.042 3.958 11 H 0.129 0.871 12 C -0.217 4.217 13 C 0.069 3.931 14 H 0.098 0.902 15 N -0.344 5.344 16 C -0.372 4.372 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.128 4.128 25 C -0.159 4.159 26 C -0.177 4.177 27 C -0.145 4.145 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.234 0.766 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.221 0.779 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.647 19.775 -8.580 22.873 hybrid contribution -0.029 -1.277 -0.430 1.348 sum -7.676 18.498 -9.009 21.961 Atomic orbital electron populations 1.22457 0.95652 1.02604 1.03042 1.21591 0.93201 0.93477 0.85305 1.21737 1.02215 0.92971 1.02454 1.22462 1.02548 1.00985 0.97827 1.88110 1.74022 1.21893 1.42829 1.22252 0.99692 0.85359 0.96895 1.20228 0.81007 0.82095 0.86972 1.90716 1.37457 1.61046 1.50788 1.45916 1.53616 1.11410 1.25458 1.22166 0.94859 0.92597 0.86175 0.87070 1.24302 0.97385 0.97491 1.02557 1.21143 0.91485 0.84778 0.95726 0.90152 1.42320 1.45894 1.00653 1.45563 1.19361 1.13845 0.88737 1.15246 0.90990 1.24743 0.99776 0.96986 0.99381 1.69662 1.40404 1.13402 1.34674 0.86123 0.80133 0.81090 0.78894 1.20503 1.21892 1.21896 1.23499 0.95272 0.96283 0.97709 1.22677 0.95540 1.01522 0.96198 1.22836 0.97146 0.99698 0.98065 1.22449 0.94256 1.00847 0.96982 0.91523 0.91340 0.92141 0.91615 0.91090 0.91655 0.92106 0.91348 0.91450 0.90231 0.90341 0.76590 0.90199 0.92083 0.77892 0.93546 0.92090 0.89549 0.91887 0.91082 0.88365 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 8.25 37.16 0.31 -0.95 16 2 C 0.10 0.90 1.14 -90.62 -0.10 0.80 16 3 C -0.14 -1.06 8.84 37.16 0.33 -0.73 16 4 C -0.18 -1.32 8.25 37.16 0.31 -1.01 16 5 O -0.35 -4.36 9.52 -55.14 -0.52 -4.88 16 6 C 0.04 0.41 5.62 36.01 0.20 0.61 16 7 C 0.51 7.32 7.91 -10.98 -0.09 7.23 16 8 O -0.52 -9.86 16.10 -14.36 -0.23 -10.09 16 9 N -0.71 -9.26 5.28 -53.36 -0.28 -9.54 16 10 C 0.15 2.24 4.12 -67.48 -0.28 1.97 16 11 H 0.11 1.83 7.47 -51.93 -0.39 1.44 16 12 C -0.17 -3.09 7.68 -25.74 -0.20 -3.29 16 13 C 0.18 3.51 4.36 -67.48 -0.29 3.21 16 14 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 15 N -0.71 -16.91 5.30 -52.99 -0.28 -17.19 16 16 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 20 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 C -0.13 -1.95 1.06 -154.71 -0.16 -2.11 16 25 C -0.12 -1.75 7.84 -26.28 -0.21 -1.96 16 26 C -0.14 -1.78 8.08 -25.74 -0.21 -1.99 16 27 C -0.11 -1.57 6.78 -26.28 -0.18 -1.75 16 28 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.41 6.54 -51.93 -0.34 0.07 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.70 6.42 -51.93 -0.33 0.37 16 38 H 0.08 0.66 6.42 -51.93 -0.33 0.32 16 39 H 0.40 4.30 6.72 -40.82 -0.27 4.03 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.39 9.66 6.23 -40.82 -0.25 9.41 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.10 1.71 7.03 -51.93 -0.36 1.34 16 49 H 0.06 0.72 6.42 -51.93 -0.33 0.39 16 LS Contribution 385.40 15.07 5.81 5.81 Total: -1.00 -32.25 385.40 -9.05 -41.31 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -8.42 Total: 11.30 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.82 Total: -7.11 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.16 Total: -53.42 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.76 Total: -14.98 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.25 -9.05 -41.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202794885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.712 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds