Wall clock time and date at job start Tue Mar 31 2020 09:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47054 * 2 1 4 4 C 1.52999 * 109.46903 * 240.00213 * 2 1 3 5 5 O 1.42899 * 109.47569 * 120.00433 * 2 1 3 6 6 C 1.42892 * 114.00108 * 59.99456 * 5 2 1 7 7 C 1.50701 * 109.47389 * 180.02562 * 6 5 2 8 8 O 1.21292 * 119.99525 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00514 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99995 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.95010 * 23.58981 * 10 9 7 12 12 C 1.53955 * 113.66165 * 252.18590 * 10 9 7 13 13 C 1.53957 * 87.29400 * 220.79907 * 12 10 9 14 14 H 1.09002 * 113.65635 * 270.26077 * 13 12 10 15 15 N 1.46493 * 113.66200 * 139.20574 * 13 12 10 16 16 C 1.36935 * 119.99854 * 107.81212 * 15 13 12 17 17 H 1.07998 * 120.00548 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99685 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00127 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99751 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47407 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47093 * 120.00378 * 20 18 16 23 23 H 1.48505 * 109.47009 * 240.00020 * 20 18 16 24 24 C 1.52904 * 86.78379 * 24.73199 * 13 12 10 25 25 C 1.52910 * 121.13510 * 209.38616 * 24 13 12 26 26 C 1.53957 * 86.78122 * 209.38051 * 25 24 13 27 27 C 1.52909 * 121.13701 * 100.82200 * 24 13 12 28 28 H 1.09007 * 109.47021 * 299.99883 * 1 2 3 29 29 H 1.08999 * 109.47692 * 60.00056 * 1 2 3 30 30 H 1.09002 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46984 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47231 * 300.00341 * 3 2 1 33 33 H 1.08998 * 109.47128 * 60.00402 * 3 2 1 34 34 H 1.09005 * 109.47389 * 299.99621 * 4 2 1 35 35 H 1.09005 * 109.47072 * 59.99849 * 4 2 1 36 36 H 1.08996 * 109.47449 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47237 * 60.00354 * 6 5 2 38 38 H 1.08997 * 109.47512 * 300.00148 * 6 5 2 39 39 H 0.97000 * 119.99275 * 0.02562 * 9 7 6 40 40 H 1.08997 * 113.57526 * 335.39851 * 12 10 9 41 41 H 1.08998 * 113.58201 * 106.19706 * 12 10 9 42 42 H 0.97002 * 120.00012 * 287.81346 * 15 13 12 43 43 H 0.97007 * 119.99662 * 179.97438 * 19 18 16 44 44 H 1.09003 * 113.66688 * 94.91189 * 25 24 13 45 45 H 1.08997 * 113.66384 * 323.85427 * 25 24 13 46 46 H 1.08998 * 113.57948 * 139.33169 * 26 25 24 47 47 H 1.09000 * 113.57875 * 270.12813 * 26 25 24 48 48 H 1.08993 * 113.65927 * 36.14497 * 27 24 13 49 49 H 1.08999 * 113.66533 * 265.08675 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.5847 -2.0355 1.2644 7 6 2.1412 -2.6445 2.5256 8 8 2.8306 -1.9776 3.2680 9 7 1.8728 -3.9300 2.8287 10 6 2.4133 -4.5217 4.0550 11 1 2.6494 -3.7789 4.8170 12 6 3.5471 -5.5328 3.8055 13 6 2.9119 -6.4054 4.9034 14 1 3.2881 -6.1920 5.9040 15 7 2.9068 -7.8359 4.5880 16 6 3.7504 -8.6863 5.2515 17 1 4.4193 -8.3025 6.0076 18 6 3.7452 -10.0420 4.9530 19 7 2.9290 -10.5100 4.0326 20 14 4.8965 -11.2020 5.8576 21 1 5.7063 -10.4325 6.8359 22 1 4.1004 -12.2308 6.5737 23 1 5.7986 -11.8648 4.8817 24 6 1.5938 -5.7010 4.5803 25 6 0.5200 -5.5030 5.6508 26 6 -0.5083 -5.5605 4.5065 27 6 0.5299 -6.3736 3.7121 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6765 -0.2073 -2.1393 36 1 3.1299 -0.7209 -1.2496 37 1 1.9491 -2.5916 0.4006 38 1 0.4959 -2.0778 1.2907 39 1 1.3217 -4.4633 2.2347 40 1 3.5160 -5.9871 2.8152 41 1 4.5350 -5.1536 4.0670 42 1 2.3058 -8.1808 3.9091 43 1 2.9257 -11.4573 3.8238 44 1 0.5695 -4.5333 6.1461 45 1 0.4420 -6.3345 6.3512 46 1 -1.4066 -6.1254 4.7555 47 1 -0.7278 -4.5869 4.0682 48 1 0.4548 -7.4498 3.8676 49 1 0.5874 -6.0994 2.6587 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202794885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:40 Heat of formation + Delta-G solvation = -52.693147 kcal Electronic energy + Delta-G solvation = -26545.358627 eV Core-core repulsion = 22894.331234 eV Total energy + Delta-G solvation = -3651.027394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96175 -40.54770 -39.30747 -36.38701 -35.61463 -34.40579 -34.09387 -31.81422 -29.41534 -28.27603 -27.94312 -26.79060 -26.26280 -25.35521 -23.85167 -21.75222 -21.57984 -20.91574 -19.51949 -19.16719 -18.11817 -17.59766 -17.08935 -17.00175 -16.51137 -16.37374 -16.15642 -15.64677 -15.50580 -14.92494 -14.68923 -14.51983 -14.23933 -14.06918 -13.90982 -13.43985 -13.18356 -13.13232 -13.09572 -12.87832 -12.85455 -12.79968 -12.74179 -12.64042 -12.33431 -12.26410 -12.19516 -12.05442 -11.82350 -11.57075 -11.39089 -11.18269 -11.04806 -10.71803 -10.63835 -10.56617 -9.94375 -8.94078 -7.94560 -5.21137 1.47033 1.47955 1.56824 1.57410 1.82671 2.56401 3.00065 3.36711 3.43500 3.60527 3.69637 3.77778 3.91422 3.94899 3.97803 4.00527 4.10395 4.15276 4.17640 4.28629 4.32244 4.55333 4.64082 4.67723 4.69193 4.73048 4.77572 4.83239 4.83368 4.96062 4.96327 4.96732 5.00477 5.07531 5.13358 5.14935 5.18122 5.33294 5.35362 5.38575 5.45895 5.52167 5.59828 5.71933 6.20862 6.28520 6.58975 7.23757 7.35799 8.11895 8.37047 9.28606 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023258 B = 0.002725 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.576338 B =10274.207839 C =10639.606695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.094 3.906 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.386 6.386 6 C 0.043 3.957 7 C 0.510 3.490 8 O -0.575 6.575 9 N -0.698 5.698 10 C 0.165 3.835 11 H 0.103 0.897 12 C -0.170 4.170 13 C 0.163 3.837 14 H 0.072 0.928 15 N -0.716 5.716 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.072 4.072 19 N -0.966 5.966 20 Si 0.967 3.033 21 H -0.270 1.270 22 H -0.293 1.293 23 H -0.295 1.295 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.109 4.109 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.413 0.587 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.379 0.621 43 H 0.251 0.749 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.094 0.906 48 H 0.068 0.932 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.877 20.590 -10.613 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.056 3.944 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.305 6.305 6 C -0.036 4.036 7 C 0.297 3.703 8 O -0.454 6.454 9 N -0.351 5.351 10 C 0.059 3.941 11 H 0.121 0.879 12 C -0.212 4.212 13 C 0.052 3.948 14 H 0.090 0.910 15 N -0.354 5.354 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.264 4.264 19 N -0.617 5.617 20 Si 0.797 3.203 21 H -0.194 1.194 22 H -0.221 1.221 23 H -0.222 1.222 24 C -0.117 4.117 25 C -0.162 4.162 26 C -0.158 4.158 27 C -0.147 4.147 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.251 0.749 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.213 0.787 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.112 0.888 48 H 0.087 0.913 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.141 21.090 -9.826 24.998 hybrid contribution 0.466 -1.580 -0.043 1.647 sum -8.674 19.511 -9.869 23.522 Atomic orbital electron populations 1.22437 0.94116 1.03341 1.03552 1.21861 0.94457 0.93442 0.84651 1.21794 1.01482 0.93029 1.03221 1.22454 1.01744 1.01533 0.97902 1.88073 1.75000 1.22666 1.44777 1.22300 1.01129 0.85003 0.95199 1.20945 0.79951 0.81778 0.87596 1.90697 1.39789 1.62239 1.52679 1.45737 1.53255 1.11401 1.24743 1.21739 0.93486 0.91894 0.86936 0.87872 1.24146 0.97914 0.97829 1.01338 1.21399 0.94683 0.82913 0.95820 0.91001 1.42408 1.45443 1.02220 1.45339 1.19690 1.13535 0.89393 1.14642 0.90998 1.25460 1.01740 0.98510 1.00737 1.69795 1.42203 1.13278 1.36392 0.85158 0.78298 0.79040 0.77787 1.19415 1.22054 1.22224 1.23349 0.94011 0.95433 0.98942 1.22680 0.95637 1.01567 0.96301 1.22773 0.96469 1.00413 0.96153 1.22410 0.94563 0.99286 0.98442 0.92397 0.89487 0.91259 0.92849 0.88623 0.92575 0.91378 0.89425 0.92756 0.88046 0.87352 0.74878 0.90843 0.92843 0.78710 0.94046 0.90885 0.91087 0.90930 0.88779 0.91344 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.25 71.98 0.59 -1.35 16 2 C 0.09 1.44 1.14 -10.79 -0.01 1.43 16 3 C -0.14 -1.96 8.84 71.98 0.64 -1.33 16 4 C -0.18 -2.16 8.25 71.98 0.59 -1.56 16 5 O -0.39 -9.04 9.52 -129.94 -1.24 -10.28 16 6 C 0.04 0.80 5.62 71.24 0.40 1.20 16 7 C 0.51 13.73 7.91 87.66 0.69 14.43 16 8 O -0.58 -21.44 16.10 15.97 0.26 -21.18 16 9 N -0.70 -16.71 5.28 -441.13 -2.33 -19.04 16 10 C 0.17 4.90 4.12 45.29 0.19 5.09 16 11 H 0.10 3.33 7.47 -2.39 -0.02 3.31 16 12 C -0.17 -6.03 7.68 31.23 0.24 -5.79 16 13 C 0.16 6.36 4.36 45.28 0.20 6.56 16 14 H 0.07 2.90 8.10 -2.39 -0.02 2.88 16 15 N -0.72 -34.97 5.30 -321.57 -1.70 -36.68 16 16 C -0.24 -13.21 9.97 84.03 0.84 -12.37 16 17 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 18 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 19 N -0.97 -57.80 13.06 21.65 0.28 -57.52 16 20 Si 0.97 46.05 29.55 68.60 2.03 48.07 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 24 C -0.12 -3.49 1.06 -52.31 -0.06 -3.55 16 25 C -0.12 -3.40 7.84 30.89 0.24 -3.16 16 26 C -0.12 -2.74 8.08 31.23 0.25 -2.48 16 27 C -0.11 -3.03 6.78 30.89 0.21 -2.82 16 28 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.63 6.54 -2.39 -0.02 0.61 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.71 6.54 -2.38 -0.02 0.69 16 35 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 1.46 6.42 -2.39 -0.02 1.44 16 38 H 0.11 1.38 6.42 -2.39 -0.02 1.37 16 39 H 0.41 7.60 6.72 -92.71 -0.62 6.98 16 40 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.38 19.43 6.23 -92.71 -0.58 18.85 16 43 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 44 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.07 2.38 7.03 -2.39 -0.02 2.36 16 49 H 0.08 1.79 6.42 -2.39 -0.02 1.78 16 Total: -1.00 -71.48 385.40 2.52 -68.96 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: -0.26 Total: 36.98 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 5.48 Total: -9.32 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -3.75 Total: -113.23 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.98 Total: -31.46 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -71.48 2.52 -68.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202794885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.265 kcal (2) G-P(sol) polarization free energy of solvation -71.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds