Wall clock time and date at job start Tue Mar 31 2020 09:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00462 * 2 1 4 4 C 1.53001 * 109.47474 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47162 * 60.00200 * 4 3 2 6 6 C 1.53001 * 109.46872 * 300.00023 * 4 3 2 7 7 C 1.50699 * 109.46876 * 180.02562 * 4 3 2 8 8 O 1.21280 * 120.00362 * 359.97438 * 7 4 3 9 9 N 1.34783 * 119.99831 * 180.02562 * 7 4 3 10 10 C 1.46496 * 119.99929 * 179.97438 * 9 7 4 11 11 H 1.08997 * 112.88517 * 23.65288 * 10 9 7 12 12 C 1.53950 * 113.66126 * 252.18363 * 10 9 7 13 13 C 1.53950 * 87.29389 * 220.79887 * 12 10 9 14 14 H 1.09002 * 113.66652 * 139.20858 * 13 12 10 15 15 N 1.46505 * 113.66045 * 270.26357 * 13 12 10 16 16 C 1.36937 * 119.99674 * 252.18693 * 15 13 12 17 17 H 1.07997 * 120.00578 * 0.02562 * 16 15 13 18 18 C 1.38821 * 119.99908 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99672 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99881 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47045 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46790 * 120.00153 * 20 18 16 23 23 H 1.48498 * 109.46712 * 239.99721 * 20 18 16 24 24 C 1.52910 * 86.78717 * 24.73347 * 13 12 10 25 25 C 1.52907 * 121.13351 * 100.81454 * 24 13 12 26 26 C 1.53951 * 86.77862 * 100.82528 * 25 24 13 27 27 C 1.52903 * 121.13886 * 209.38108 * 24 13 12 28 28 H 1.09004 * 109.47566 * 59.99885 * 1 2 3 29 29 H 1.08997 * 109.47711 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46929 * 300.00078 * 1 2 3 31 31 H 1.09000 * 109.46688 * 59.99778 * 3 2 1 32 32 H 1.09006 * 109.47217 * 300.00669 * 3 2 1 33 33 H 1.08997 * 109.46929 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.46750 * 300.00328 * 5 4 3 35 35 H 1.08998 * 109.46825 * 59.99671 * 5 4 3 36 36 H 1.09000 * 109.47061 * 300.00331 * 6 4 3 37 37 H 1.08998 * 109.46686 * 59.99884 * 6 4 3 38 38 H 1.09000 * 109.46921 * 180.02562 * 6 4 3 39 39 H 0.97001 * 119.99281 * 359.97438 * 9 7 4 40 40 H 1.09001 * 113.58096 * 335.39666 * 12 10 9 41 41 H 1.09001 * 113.58052 * 106.11722 * 12 10 9 42 42 H 0.96998 * 120.00313 * 72.19171 * 15 13 12 43 43 H 0.97004 * 119.99907 * 180.02562 * 19 18 16 44 44 H 1.08995 * 113.66604 * 215.29469 * 25 24 13 45 45 H 1.08996 * 113.66613 * 346.35541 * 25 24 13 46 46 H 1.09000 * 113.58140 * 270.13184 * 26 25 24 47 47 H 1.08998 * 113.65170 * 139.34675 * 26 25 24 48 48 H 1.08999 * 113.66373 * 13.65529 * 27 24 13 49 49 H 1.09007 * 113.66161 * 144.61414 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9864 0.4255 -1.2502 6 6 3.9874 0.4250 1.2483 7 6 4.1484 2.5613 0.0000 8 8 3.4356 3.5425 0.0004 9 7 5.4888 2.7021 -0.0009 10 6 6.0847 4.0404 -0.0009 11 1 5.4171 4.8016 0.4027 12 6 6.7291 4.4299 -1.3437 13 6 7.8763 5.0544 -0.5287 14 1 8.8641 4.8687 -0.9504 15 7 7.6564 6.4620 -0.1871 16 6 8.3830 7.4398 -0.8124 17 1 9.1179 7.1735 -1.5576 18 6 8.1743 8.7736 -0.4891 19 7 7.2784 9.0982 0.4187 20 14 9.1650 10.1076 -1.3427 21 1 10.0989 9.4849 -2.3151 22 1 8.2442 11.0258 -2.0597 23 1 9.9391 10.8723 -0.3322 24 6 7.4943 4.0845 0.5901 25 6 8.2912 2.8019 0.8308 26 6 8.9774 3.5487 1.9890 27 6 7.7252 4.4414 2.0589 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 5.0730 0.3391 -1.2504 34 1 3.5430 -0.5702 -1.2502 35 1 3.6644 0.9667 -2.1399 36 1 3.6661 0.9658 2.1385 37 1 3.5440 -0.5707 1.2482 38 1 5.0740 0.3393 1.2481 39 1 6.0589 1.9173 -0.0016 40 1 7.0368 3.5738 -1.9442 41 1 6.1490 5.1578 -1.9109 42 1 6.9961 6.7013 0.4820 43 1 7.1322 10.0303 0.6444 44 1 7.6787 1.9606 1.1547 45 1 8.9663 2.5465 0.0140 46 1 9.8784 4.0842 1.6895 47 1 9.1259 2.9354 2.8777 48 1 7.9480 5.4956 2.2232 49 1 6.9525 4.0622 2.7279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203184990.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:02 Heat of formation + Delta-G solvation = -36.761878 kcal Electronic energy + Delta-G solvation = -27069.086028 eV Core-core repulsion = 23418.749466 eV Total energy + Delta-G solvation = -3650.336562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.75196 -39.60129 -37.87250 -35.06607 -34.94128 -33.97993 -32.21405 -29.61791 -27.61020 -27.52342 -25.76266 -25.52917 -24.81513 -24.16843 -23.17105 -21.69275 -20.35572 -19.43478 -17.83834 -17.22833 -16.94882 -16.30093 -16.06810 -15.87507 -15.25397 -15.08895 -14.83875 -14.70049 -14.23084 -13.90665 -13.53044 -13.40544 -13.05079 -12.67759 -12.55128 -12.40016 -12.29157 -12.14285 -12.04274 -11.92278 -11.71356 -11.59993 -11.38257 -11.25099 -10.92010 -10.89248 -10.84133 -10.72776 -10.14165 -10.04710 -9.87027 -9.81402 -9.73790 -9.53892 -9.36968 -8.87474 -8.58209 -7.00318 -5.79704 -3.09375 2.74449 3.07880 3.42206 3.47789 3.50228 3.79999 4.46096 4.51779 4.63779 4.69805 4.78085 4.91000 4.97104 5.03167 5.11549 5.12419 5.19486 5.34054 5.40578 5.40806 5.43212 5.45585 5.47561 5.60821 5.65446 5.67520 5.73533 5.80694 5.92877 5.95923 5.99213 6.02913 6.03707 6.06461 6.12607 6.24542 6.44275 6.57638 6.66690 6.71703 6.79550 6.88001 6.91405 7.09111 7.68008 7.70592 8.36917 8.38384 9.49593 10.05794 10.40293 11.42352 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.003236 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.135615 B = 8649.610154 C = 9424.384082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.085 3.915 4 C -0.081 4.081 5 C -0.135 4.135 6 C -0.135 4.135 7 C 0.521 3.479 8 O -0.540 6.540 9 N -0.709 5.709 10 C 0.138 3.862 11 H 0.114 0.886 12 C -0.182 4.182 13 C 0.198 3.802 14 H 0.068 0.932 15 N -0.700 5.700 16 C -0.243 4.243 17 H 0.073 0.927 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.124 4.124 25 C -0.115 4.115 26 C -0.133 4.133 27 C -0.125 4.125 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.396 0.604 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.176 -21.681 1.022 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C 0.008 3.992 4 C -0.084 4.084 5 C -0.193 4.193 6 C -0.193 4.193 7 C 0.307 3.693 8 O -0.417 6.417 9 N -0.359 5.359 10 C 0.035 3.965 11 H 0.131 0.869 12 C -0.224 4.224 13 C 0.084 3.916 14 H 0.086 0.914 15 N -0.338 5.338 16 C -0.374 4.374 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.576 5.576 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.127 4.127 25 C -0.153 4.153 26 C -0.170 4.170 27 C -0.163 4.163 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.221 0.779 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.077 0.923 48 H 0.101 0.899 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.448 -20.960 0.930 21.949 hybrid contribution 0.191 0.747 -0.242 0.808 sum -6.257 -20.213 0.688 21.171 Atomic orbital electron populations 1.22714 0.80937 1.02505 1.00187 1.87775 1.19630 1.27945 1.95530 1.22229 0.91274 0.83993 1.01690 1.20721 0.95046 0.93767 0.98878 1.21784 1.01186 1.00874 0.95453 1.21786 1.01143 1.00905 0.95452 1.20291 0.82884 0.90280 0.75889 1.90727 1.61016 1.40477 1.49452 1.46008 1.06009 1.09627 1.74256 1.22429 0.92753 0.83438 0.97929 0.86867 1.24292 1.01042 1.00493 0.96596 1.20627 0.95464 0.84585 0.90918 0.91399 1.42117 1.45910 0.98484 1.47285 1.19292 1.15093 0.86348 1.16691 0.90946 1.24768 0.99374 0.97221 0.99318 1.69677 1.36198 1.17063 1.34679 0.86113 0.79225 0.82161 0.78641 1.20515 1.21843 1.21851 1.23617 0.94726 0.97726 0.96620 1.22524 0.98411 0.95515 0.98870 1.22732 0.98170 0.98473 0.97661 1.22624 0.96893 1.01405 0.95365 0.94056 0.89690 0.94055 0.92413 0.92398 0.92162 0.90649 0.92174 0.92217 0.90630 0.92203 0.76928 0.91264 0.90968 0.77855 0.93437 0.90786 0.91423 0.90055 0.92295 0.89911 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.08 9.35 -35.23 -0.33 -4.41 16 3 C 0.09 0.99 4.09 37.16 0.15 1.14 16 4 C -0.08 -0.90 0.70 -155.66 -0.11 -1.01 16 5 C -0.14 -1.27 8.23 37.16 0.31 -0.97 16 6 C -0.14 -1.26 8.22 37.16 0.31 -0.95 16 7 C 0.52 7.60 6.48 -10.98 -0.07 7.53 16 8 O -0.54 -10.28 15.58 5.56 0.09 -10.19 16 9 N -0.71 -9.47 5.03 -53.37 -0.27 -9.74 16 10 C 0.14 2.30 4.03 -67.48 -0.27 2.03 16 11 H 0.11 2.30 7.46 -51.93 -0.39 1.92 16 12 C -0.18 -3.21 7.68 -25.75 -0.20 -3.41 16 13 C 0.20 3.81 4.36 -67.48 -0.29 3.51 16 14 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 15 N -0.70 -17.11 4.85 -52.98 -0.26 -17.37 16 16 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 20 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C -0.12 -1.95 0.92 -154.71 -0.14 -2.09 16 25 C -0.12 -1.41 7.15 -26.28 -0.19 -1.60 16 26 C -0.13 -1.78 8.08 -25.75 -0.21 -1.99 16 27 C -0.13 -2.00 7.62 -26.29 -0.20 -2.20 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 34 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.65 7.68 -51.93 -0.40 0.26 16 38 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 39 H 0.40 4.19 5.87 -40.82 -0.24 3.95 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.39 10.21 7.62 -40.82 -0.31 9.90 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.07 0.76 7.03 -51.93 -0.36 0.40 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 49 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -31.40 388.86 -8.00 -39.40 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -8.74 Total: 12.17 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.05 Total: -5.78 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.20 Total: -54.27 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.24 Total: -14.61 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.40 -8.00 -39.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203184990.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.637 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds