Wall clock time and date at job start Tue Mar 31 2020 09:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00462 * 2 1 4 4 C 1.53001 * 109.47474 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47162 * 60.00200 * 4 3 2 6 6 C 1.53001 * 109.46872 * 300.00023 * 4 3 2 7 7 C 1.50699 * 109.46876 * 180.02562 * 4 3 2 8 8 O 1.21280 * 120.00362 * 359.97438 * 7 4 3 9 9 N 1.34783 * 119.99831 * 180.02562 * 7 4 3 10 10 C 1.46496 * 119.99929 * 179.97438 * 9 7 4 11 11 H 1.08997 * 112.88517 * 23.65288 * 10 9 7 12 12 C 1.53950 * 113.66126 * 252.18363 * 10 9 7 13 13 C 1.53950 * 87.29389 * 220.79887 * 12 10 9 14 14 H 1.09002 * 113.66652 * 139.20858 * 13 12 10 15 15 N 1.46505 * 113.66045 * 270.26357 * 13 12 10 16 16 C 1.36937 * 119.99674 * 252.18693 * 15 13 12 17 17 H 1.07997 * 120.00578 * 0.02562 * 16 15 13 18 18 C 1.38821 * 119.99908 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99672 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99881 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47045 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46790 * 120.00153 * 20 18 16 23 23 H 1.48498 * 109.46712 * 239.99721 * 20 18 16 24 24 C 1.52910 * 86.78717 * 24.73347 * 13 12 10 25 25 C 1.52907 * 121.13351 * 100.81454 * 24 13 12 26 26 C 1.53951 * 86.77862 * 100.82528 * 25 24 13 27 27 C 1.52903 * 121.13886 * 209.38108 * 24 13 12 28 28 H 1.09004 * 109.47566 * 59.99885 * 1 2 3 29 29 H 1.08997 * 109.47711 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46929 * 300.00078 * 1 2 3 31 31 H 1.09000 * 109.46688 * 59.99778 * 3 2 1 32 32 H 1.09006 * 109.47217 * 300.00669 * 3 2 1 33 33 H 1.08997 * 109.46929 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.46750 * 300.00328 * 5 4 3 35 35 H 1.08998 * 109.46825 * 59.99671 * 5 4 3 36 36 H 1.09000 * 109.47061 * 300.00331 * 6 4 3 37 37 H 1.08998 * 109.46686 * 59.99884 * 6 4 3 38 38 H 1.09000 * 109.46921 * 180.02562 * 6 4 3 39 39 H 0.97001 * 119.99281 * 359.97438 * 9 7 4 40 40 H 1.09001 * 113.58096 * 335.39666 * 12 10 9 41 41 H 1.09001 * 113.58052 * 106.11722 * 12 10 9 42 42 H 0.96998 * 120.00313 * 72.19171 * 15 13 12 43 43 H 0.97004 * 119.99907 * 180.02562 * 19 18 16 44 44 H 1.08995 * 113.66604 * 215.29469 * 25 24 13 45 45 H 1.08996 * 113.66613 * 346.35541 * 25 24 13 46 46 H 1.09000 * 113.58140 * 270.13184 * 26 25 24 47 47 H 1.08998 * 113.65170 * 139.34675 * 26 25 24 48 48 H 1.08999 * 113.66373 * 13.65529 * 27 24 13 49 49 H 1.09007 * 113.66161 * 144.61414 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9864 0.4255 -1.2502 6 6 3.9874 0.4250 1.2483 7 6 4.1484 2.5613 0.0000 8 8 3.4356 3.5425 0.0004 9 7 5.4888 2.7021 -0.0009 10 6 6.0847 4.0404 -0.0009 11 1 5.4171 4.8016 0.4027 12 6 6.7291 4.4299 -1.3437 13 6 7.8763 5.0544 -0.5287 14 1 8.8641 4.8687 -0.9504 15 7 7.6564 6.4620 -0.1871 16 6 8.3830 7.4398 -0.8124 17 1 9.1179 7.1735 -1.5576 18 6 8.1743 8.7736 -0.4891 19 7 7.2784 9.0982 0.4187 20 14 9.1650 10.1076 -1.3427 21 1 10.0989 9.4849 -2.3151 22 1 8.2442 11.0258 -2.0597 23 1 9.9391 10.8723 -0.3322 24 6 7.4943 4.0845 0.5901 25 6 8.2912 2.8019 0.8308 26 6 8.9774 3.5487 1.9890 27 6 7.7252 4.4414 2.0589 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 5.0730 0.3391 -1.2504 34 1 3.5430 -0.5702 -1.2502 35 1 3.6644 0.9667 -2.1399 36 1 3.6661 0.9658 2.1385 37 1 3.5440 -0.5707 1.2482 38 1 5.0740 0.3393 1.2481 39 1 6.0589 1.9173 -0.0016 40 1 7.0368 3.5738 -1.9442 41 1 6.1490 5.1578 -1.9109 42 1 6.9961 6.7013 0.4820 43 1 7.1322 10.0303 0.6444 44 1 7.6787 1.9606 1.1547 45 1 8.9663 2.5465 0.0140 46 1 9.8784 4.0842 1.6895 47 1 9.1259 2.9354 2.8777 48 1 7.9480 5.4956 2.2232 49 1 6.9525 4.0622 2.7279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203184990.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:01 Heat of formation + Delta-G solvation = -57.698694 kcal Electronic energy + Delta-G solvation = -27069.993916 eV Core-core repulsion = 23418.749466 eV Total energy + Delta-G solvation = -3651.244451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03158 -40.76378 -38.79725 -36.49631 -35.97396 -35.53212 -33.84575 -31.49452 -28.36810 -28.24289 -26.74779 -26.61975 -26.39841 -25.52616 -24.72800 -22.98817 -21.69011 -20.54454 -19.50167 -18.71449 -18.09999 -17.53892 -16.91332 -16.89517 -16.68769 -16.26202 -16.15068 -15.84644 -15.73312 -15.25406 -14.84664 -14.40740 -14.24793 -14.17943 -13.79616 -13.52756 -13.33173 -13.27918 -13.08134 -13.05569 -12.85452 -12.76868 -12.68411 -12.58863 -12.40069 -12.15912 -12.05482 -11.97166 -11.78931 -11.72886 -11.32906 -11.21043 -10.90594 -10.76869 -10.67110 -10.61813 -9.87457 -9.01896 -7.95871 -5.24939 1.45930 1.47057 1.56981 1.57958 2.01439 2.53718 2.91051 3.35863 3.42217 3.51489 3.57577 3.76359 3.81287 3.87958 3.98023 4.04243 4.13423 4.20070 4.24578 4.43311 4.46693 4.57855 4.60130 4.61192 4.65989 4.78024 4.79337 4.82524 4.85399 4.86800 4.91131 4.92366 5.00296 5.06348 5.12881 5.15529 5.25619 5.30778 5.32280 5.33852 5.44652 5.52949 5.61750 5.74491 6.11514 6.25996 6.57145 7.25264 7.31244 8.07439 8.29571 9.27735 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.003236 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.135615 B = 8649.610154 C = 9424.384082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.088 3.912 4 C -0.074 4.074 5 C -0.132 4.132 6 C -0.132 4.132 7 C 0.518 3.482 8 O -0.593 6.593 9 N -0.690 5.690 10 C 0.146 3.854 11 H 0.067 0.933 12 C -0.171 4.171 13 C 0.179 3.821 14 H 0.074 0.926 15 N -0.716 5.716 16 C -0.238 4.238 17 H 0.081 0.919 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.973 3.027 21 H -0.262 1.262 22 H -0.298 1.298 23 H -0.294 1.294 24 C -0.114 4.114 25 C -0.094 4.094 26 C -0.125 4.125 27 C -0.135 4.135 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.415 0.585 40 H 0.105 0.895 41 H 0.035 0.965 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.039 0.961 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.659 -25.583 0.512 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C 0.011 3.989 4 C -0.077 4.077 5 C -0.189 4.189 6 C -0.189 4.189 7 C 0.305 3.695 8 O -0.473 6.473 9 N -0.342 5.342 10 C 0.041 3.959 11 H 0.085 0.915 12 C -0.213 4.213 13 C 0.068 3.932 14 H 0.092 0.908 15 N -0.352 5.352 16 C -0.370 4.370 17 H 0.099 0.901 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.225 1.225 23 H -0.221 1.221 24 C -0.116 4.116 25 C -0.132 4.132 26 C -0.162 4.162 27 C -0.173 4.173 28 H 0.061 0.939 29 H 0.126 0.874 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.254 0.746 40 H 0.123 0.877 41 H 0.054 0.946 42 H 0.204 0.796 43 H 0.059 0.941 44 H 0.125 0.875 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.888 -24.961 0.393 25.438 hybrid contribution -0.362 1.903 -0.087 1.939 sum -5.250 -23.058 0.306 23.650 Atomic orbital electron populations 1.22934 0.79619 1.04108 1.00429 1.87752 1.21069 1.26800 1.95502 1.22094 0.92112 0.84474 1.00255 1.20699 0.94272 0.91606 1.01099 1.21801 1.02647 1.00806 0.93661 1.21804 1.02648 1.00812 0.93632 1.21017 0.82806 0.91228 0.74442 1.90715 1.62229 1.42644 1.51731 1.45740 1.05963 1.08903 1.73552 1.21928 0.92654 0.84116 0.97209 0.91513 1.24172 0.99652 1.00646 0.96787 1.20900 0.96138 0.82824 0.93326 0.90777 1.42264 1.45432 1.00566 1.46954 1.19711 1.14314 0.87125 1.15816 0.90110 1.25594 1.01052 0.99601 1.00701 1.69849 1.38507 1.16874 1.36902 0.85067 0.77812 0.79191 0.77661 1.18625 1.22517 1.22078 1.23460 0.93790 0.99125 0.95242 1.22564 0.97753 0.94113 0.98740 1.22684 0.96173 0.97897 0.99435 1.22668 0.99201 0.99618 0.95805 0.93880 0.87380 0.93838 0.93919 0.93999 0.89978 0.89407 0.93367 0.93294 0.89415 0.89947 0.74584 0.87659 0.94615 0.79648 0.94145 0.87473 0.89388 0.91229 0.89607 0.94202 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.39 -7.59 9.35 -148.98 -1.39 -8.99 16 3 C 0.09 2.02 4.09 71.98 0.29 2.32 16 4 C -0.07 -1.50 0.70 -52.93 -0.04 -1.54 16 5 C -0.13 -2.07 8.23 71.98 0.59 -1.48 16 6 C -0.13 -2.03 8.22 71.98 0.59 -1.43 16 7 C 0.52 14.81 6.48 87.66 0.57 15.38 16 8 O -0.59 -23.57 15.58 -3.03 -0.05 -23.62 16 9 N -0.69 -17.09 5.03 -441.15 -2.22 -19.32 16 10 C 0.15 4.87 4.03 45.29 0.18 5.05 16 11 H 0.07 2.90 7.46 -2.39 -0.02 2.89 16 12 C -0.17 -5.96 7.68 31.23 0.24 -5.72 16 13 C 0.18 6.89 4.36 45.28 0.20 7.08 16 14 H 0.07 2.74 8.10 -2.39 -0.02 2.72 16 15 N -0.72 -36.39 4.85 -321.54 -1.56 -37.95 16 16 C -0.24 -13.24 9.97 84.04 0.84 -12.40 16 17 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 18 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 19 N -0.97 -61.03 13.06 21.65 0.28 -60.75 16 20 Si 0.97 46.82 29.55 68.60 2.03 48.84 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 23 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 24 C -0.11 -3.43 0.92 -52.31 -0.05 -3.48 16 25 C -0.09 -1.88 7.15 30.88 0.22 -1.66 16 26 C -0.12 -2.96 8.08 31.23 0.25 -2.71 16 27 C -0.14 -4.27 7.62 30.88 0.24 -4.04 16 28 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 32 H 0.04 1.08 8.10 -2.38 -0.02 1.06 16 33 H 0.08 0.93 7.56 -2.39 -0.02 0.91 16 34 H 0.09 1.21 7.68 -2.38 -0.02 1.19 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 1.19 7.68 -2.39 -0.02 1.17 16 38 H 0.08 0.90 7.56 -2.39 -0.02 0.88 16 39 H 0.42 6.95 5.87 -92.71 -0.54 6.40 16 40 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.37 20.93 7.62 -92.71 -0.71 20.23 16 43 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.11 1.51 7.03 -2.39 -0.02 1.50 16 45 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.04 1.60 7.58 -2.39 -0.02 1.58 16 49 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -73.76 388.86 2.61 -71.15 By element: Atomic # 1 Polarization: 38.03 SS G_CDS: -0.32 Total: 37.71 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.84 Total: -7.07 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -3.50 Total: -118.02 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.44 Total: -32.61 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -73.76 2.61 -71.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203184990.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.449 kcal (2) G-P(sol) polarization free energy of solvation -73.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds