Wall clock time and date at job start Tue Mar 31 2020 10:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47177 * 2 1 4 4 H 1.09000 * 109.86928 * 54.55497 * 3 2 1 5 5 C 1.54097 * 109.87769 * 175.71170 * 3 2 1 6 6 C 1.54984 * 104.25046 * 121.58920 * 5 3 2 7 7 C 1.54998 * 102.01101 * 20.66909 * 6 5 3 8 8 H 1.08996 * 110.62054 * 81.75646 * 7 6 5 9 9 C 1.50702 * 110.61626 * 204.59541 * 7 6 5 10 10 O 1.21283 * 120.00262 * 112.82191 * 9 7 6 11 11 N 1.34777 * 119.99928 * 292.54096 * 9 7 6 12 12 C 1.46931 * 120.63086 * 0.02562 * 11 9 7 13 13 C 1.52760 * 109.00543 * 233.58109 * 12 11 9 14 14 C 1.53039 * 109.38459 * 305.58756 * 13 12 11 15 15 C 1.53007 * 109.46049 * 181.26411 * 14 13 12 16 16 N 1.46497 * 109.47053 * 64.93170 * 15 14 13 17 17 C 1.36940 * 119.99543 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00298 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99726 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00055 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99857 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47102 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46916 * 119.99875 * 21 19 17 24 24 H 1.48494 * 109.46991 * 239.99979 * 21 19 17 25 25 C 1.53042 * 109.54031 * 61.24177 * 14 13 12 26 26 C 1.46925 * 120.62933 * 180.27723 * 11 9 7 27 27 O 1.43743 * 109.87839 * 293.54537 * 3 2 1 28 28 H 1.08997 * 109.47178 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47001 * 299.99905 * 1 2 3 30 30 H 1.09007 * 109.47140 * 59.99934 * 1 2 3 31 31 H 1.08995 * 109.47463 * 240.00139 * 2 1 3 32 32 H 1.09007 * 109.47140 * 120.00065 * 2 1 3 33 33 H 1.08998 * 110.48717 * 240.12812 * 5 3 2 34 34 H 1.09000 * 110.49276 * 2.64697 * 5 3 2 35 35 H 1.08999 * 110.84857 * 262.54042 * 6 5 3 36 36 H 1.09009 * 111.04897 * 138.88007 * 6 5 3 37 37 H 1.08997 * 109.58191 * 353.41302 * 12 11 9 38 38 H 1.09000 * 109.58404 * 113.84014 * 12 11 9 39 39 H 1.09004 * 109.56227 * 185.55021 * 13 12 11 40 40 H 1.09000 * 109.38786 * 65.51167 * 13 12 11 41 41 H 1.09001 * 109.44620 * 301.22706 * 14 13 12 42 42 H 1.08999 * 109.46781 * 184.93065 * 15 14 13 43 43 H 1.09002 * 109.46610 * 304.93054 * 15 14 13 44 44 H 0.97000 * 120.00214 * 359.97438 * 16 15 14 45 45 H 0.97000 * 120.00088 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.49700 * 178.68705 * 25 14 13 47 47 H 1.08998 * 109.49757 * 58.58603 * 25 14 13 48 48 H 1.09005 * 109.58470 * 246.15337 * 26 11 9 49 49 H 1.08991 * 109.58721 * 6.58154 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9900 0.8351 5 6 3.5771 1.4548 0.1084 6 6 4.0430 2.2125 -1.1608 7 6 2.7658 2.9974 -1.5549 8 1 2.6786 3.9098 -0.9651 9 6 2.7733 3.3181 -3.0274 10 8 1.9612 2.8009 -3.7649 11 7 3.6790 4.1841 -3.5239 12 6 4.6656 4.8229 -2.6421 13 6 4.5912 6.3374 -2.8273 14 6 4.7599 6.6768 -4.3100 15 6 4.7172 8.1952 -4.4934 16 7 5.8699 8.8008 -3.8220 17 6 6.0433 10.1589 -3.8508 18 1 5.3305 10.7834 -4.3688 19 6 7.1352 10.7328 -3.2142 20 7 8.0036 9.9717 -2.5825 21 14 7.3722 12.5853 -3.2540 22 1 6.2661 13.2093 -4.0238 23 1 7.3704 13.1144 -1.8665 24 1 8.6686 12.9046 -3.9040 25 6 3.6276 6.0340 -5.1143 26 6 3.6949 4.5114 -4.9561 27 8 1.6938 2.0833 -1.2392 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8921 1.9883 1.0052 34 1 3.9674 0.4371 0.1141 35 1 4.3282 1.5136 -1.9471 36 1 4.8627 2.8936 -0.9314 37 1 4.4451 4.5717 -1.6047 38 1 5.6657 4.4747 -2.9001 39 1 5.3846 6.8148 -2.2522 40 1 3.6228 6.6973 -2.4796 41 1 5.7180 6.2952 -4.6629 42 1 4.7493 8.4338 -5.5565 43 1 3.7970 8.5877 -4.0605 44 1 6.5099 8.2399 -3.3565 45 1 8.7668 10.3727 -2.1380 46 1 3.7352 6.2954 -6.1669 47 1 2.6681 6.3963 -4.7452 48 1 4.6146 4.1373 -5.4062 49 1 2.8344 4.0547 -5.4449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205410360.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:32 Heat of formation + Delta-G solvation = -84.331957 kcal Electronic energy + Delta-G solvation = -26530.529751 eV Core-core repulsion = 22878.130395 eV Total energy + Delta-G solvation = -3652.399356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.78200 -39.25788 -37.55623 -34.98853 -33.93477 -33.07979 -32.29935 -31.19207 -30.35212 -28.88891 -26.70645 -24.75308 -23.53648 -23.24801 -22.33302 -21.57681 -21.20364 -20.28722 -19.07952 -17.56507 -17.01322 -16.76769 -16.35886 -15.84865 -15.04667 -14.83805 -14.62302 -14.26293 -13.99004 -13.91551 -13.84598 -13.69286 -13.61948 -13.28102 -13.19490 -12.67563 -12.50046 -12.27331 -12.16347 -12.02214 -11.82080 -11.76774 -11.34468 -11.18032 -11.08616 -11.01435 -10.89487 -10.87020 -10.42558 -10.33810 -10.28552 -10.08139 -9.98471 -9.67338 -9.58096 -8.89841 -8.65235 -6.93691 -5.79620 -3.07446 2.48442 2.69323 3.41349 3.47537 3.49381 3.64722 4.09459 4.24963 4.46817 4.52896 4.56867 4.76410 4.79312 4.84136 4.91268 5.01202 5.03463 5.06119 5.16484 5.21900 5.32358 5.34771 5.38789 5.48169 5.50322 5.53457 5.60660 5.62321 5.67292 5.72605 5.78396 5.89635 5.93071 5.95117 6.06249 6.07722 6.17217 6.25691 6.38383 6.43686 6.58408 6.64098 6.78731 6.90074 7.32011 7.68938 8.10477 8.39972 9.51287 10.09213 10.43961 11.43492 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023747 B = 0.002597 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.828065 B =10779.833557 C =11459.963399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.072 3.928 4 H 0.071 0.929 5 C -0.151 4.151 6 C -0.145 4.145 7 C 0.060 3.940 8 H 0.096 0.904 9 C 0.522 3.478 10 O -0.528 6.528 11 N -0.605 5.605 12 C 0.102 3.898 13 C -0.127 4.127 14 C -0.093 4.093 15 C 0.158 3.842 16 N -0.732 5.732 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.126 4.126 26 C 0.114 3.886 27 O -0.342 6.342 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.019 0.981 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.215 -19.970 5.216 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.014 3.986 4 H 0.089 0.911 5 C -0.189 4.189 6 C -0.183 4.183 7 C -0.001 4.001 8 H 0.114 0.886 9 C 0.308 3.692 10 O -0.404 6.404 11 N -0.340 5.340 12 C -0.021 4.021 13 C -0.165 4.165 14 C -0.112 4.112 15 C 0.030 3.970 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.584 5.584 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.165 4.165 26 C -0.008 4.008 27 O -0.260 6.260 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.891 -20.121 4.657 22.899 hybrid contribution 0.708 1.082 0.378 1.348 sum -9.182 -19.039 5.036 21.729 Atomic orbital electron populations 1.21728 0.95204 1.01495 1.02448 1.21709 0.97013 0.94599 1.02514 1.22890 0.94030 0.94336 0.87346 0.91072 1.23049 0.95361 1.02048 0.98417 1.23230 0.97062 0.99683 0.98350 1.22952 0.88265 0.95039 0.93878 0.88632 1.20116 0.80647 0.79034 0.89356 1.90698 1.38124 1.51520 1.60037 1.48072 1.33019 1.43489 1.09399 1.21932 0.92090 0.94289 0.93764 1.21873 1.03525 0.93386 0.97722 1.21303 0.98272 0.97134 0.94532 1.20674 0.91380 0.89341 0.95592 1.42380 1.26504 1.04772 1.63985 1.19287 1.06360 0.83529 1.27632 0.91201 1.24727 0.97701 0.97813 1.00854 1.69657 1.14961 1.33729 1.40020 0.86124 0.77501 0.85449 0.77184 1.20584 1.21883 1.21893 1.21927 0.99649 0.93913 1.01003 1.21644 1.02872 0.95989 0.80277 1.89021 1.40950 1.56284 1.39762 0.92854 0.92901 0.91753 0.91137 0.90837 0.90115 0.89922 0.89952 0.88844 0.90004 0.90851 0.89182 0.91734 0.90923 0.96325 0.96400 0.78298 0.93602 0.90548 0.91540 0.91384 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.82 37.16 0.37 -0.88 16 2 C -0.12 -0.96 5.42 -26.73 -0.14 -1.10 16 3 C 0.07 0.64 3.42 -26.16 -0.09 0.55 16 4 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 5 C -0.15 -1.06 6.65 -25.11 -0.17 -1.23 16 6 C -0.15 -1.22 5.88 -24.63 -0.14 -1.37 16 7 C 0.06 0.67 2.76 -26.83 -0.07 0.59 16 8 H 0.10 0.95 7.49 -51.93 -0.39 0.56 16 9 C 0.52 7.28 7.12 -10.98 -0.08 7.20 16 10 O -0.53 -9.41 15.98 -13.51 -0.22 -9.63 16 11 N -0.60 -7.49 2.98 -173.00 -0.52 -8.00 16 12 C 0.10 1.11 5.61 -3.93 -0.02 1.09 16 13 C -0.13 -1.76 5.23 -26.83 -0.14 -1.90 16 14 C -0.09 -1.40 2.19 -90.57 -0.20 -1.60 16 15 C 0.16 3.06 5.65 -4.04 -0.02 3.04 16 16 N -0.73 -17.89 5.32 -59.90 -0.32 -18.21 16 17 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 21 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C -0.13 -1.62 5.36 -26.59 -0.14 -1.76 16 26 C 0.11 1.40 6.44 -3.69 -0.02 1.38 16 27 O -0.34 -4.35 10.09 -54.30 -0.55 -4.90 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.66 7.89 -51.93 -0.41 0.25 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.50 7.70 -51.93 -0.40 0.10 16 35 H 0.08 0.75 8.05 -51.93 -0.42 0.34 16 36 H 0.09 0.64 6.53 -51.92 -0.34 0.30 16 37 H 0.08 0.74 4.57 -51.93 -0.24 0.50 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 9.67 6.84 -40.82 -0.28 9.39 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -33.08 378.68 -9.99 -43.07 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.67 Total: 4.90 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.13 Total: -3.20 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.11 Total: -53.11 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.76 Total: -14.53 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.08 -9.99 -43.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205410360.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.265 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds