Wall clock time and date at job start Tue Mar 31 2020 10:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47177 * 2 1 4 4 H 1.09000 * 109.86928 * 54.55497 * 3 2 1 5 5 C 1.54097 * 109.87769 * 175.71170 * 3 2 1 6 6 C 1.54984 * 104.25046 * 121.58920 * 5 3 2 7 7 C 1.54998 * 102.01101 * 20.66909 * 6 5 3 8 8 H 1.08996 * 110.62054 * 81.75646 * 7 6 5 9 9 C 1.50702 * 110.61626 * 204.59541 * 7 6 5 10 10 O 1.21283 * 120.00262 * 112.82191 * 9 7 6 11 11 N 1.34777 * 119.99928 * 292.54096 * 9 7 6 12 12 C 1.46931 * 120.63086 * 0.02562 * 11 9 7 13 13 C 1.52760 * 109.00543 * 233.58109 * 12 11 9 14 14 C 1.53039 * 109.38459 * 305.58756 * 13 12 11 15 15 C 1.53007 * 109.46049 * 181.26411 * 14 13 12 16 16 N 1.46497 * 109.47053 * 64.93170 * 15 14 13 17 17 C 1.36940 * 119.99543 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00298 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99726 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00055 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99857 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47102 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46916 * 119.99875 * 21 19 17 24 24 H 1.48494 * 109.46991 * 239.99979 * 21 19 17 25 25 C 1.53042 * 109.54031 * 61.24177 * 14 13 12 26 26 C 1.46925 * 120.62933 * 180.27723 * 11 9 7 27 27 O 1.43743 * 109.87839 * 293.54537 * 3 2 1 28 28 H 1.08997 * 109.47178 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47001 * 299.99905 * 1 2 3 30 30 H 1.09007 * 109.47140 * 59.99934 * 1 2 3 31 31 H 1.08995 * 109.47463 * 240.00139 * 2 1 3 32 32 H 1.09007 * 109.47140 * 120.00065 * 2 1 3 33 33 H 1.08998 * 110.48717 * 240.12812 * 5 3 2 34 34 H 1.09000 * 110.49276 * 2.64697 * 5 3 2 35 35 H 1.08999 * 110.84857 * 262.54042 * 6 5 3 36 36 H 1.09009 * 111.04897 * 138.88007 * 6 5 3 37 37 H 1.08997 * 109.58191 * 353.41302 * 12 11 9 38 38 H 1.09000 * 109.58404 * 113.84014 * 12 11 9 39 39 H 1.09004 * 109.56227 * 185.55021 * 13 12 11 40 40 H 1.09000 * 109.38786 * 65.51167 * 13 12 11 41 41 H 1.09001 * 109.44620 * 301.22706 * 14 13 12 42 42 H 1.08999 * 109.46781 * 184.93065 * 15 14 13 43 43 H 1.09002 * 109.46610 * 304.93054 * 15 14 13 44 44 H 0.97000 * 120.00214 * 359.97438 * 16 15 14 45 45 H 0.97000 * 120.00088 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.49700 * 178.68705 * 25 14 13 47 47 H 1.08998 * 109.49757 * 58.58603 * 25 14 13 48 48 H 1.09005 * 109.58470 * 246.15337 * 26 11 9 49 49 H 1.08991 * 109.58721 * 6.58154 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9900 0.8351 5 6 3.5771 1.4548 0.1084 6 6 4.0430 2.2125 -1.1608 7 6 2.7658 2.9974 -1.5549 8 1 2.6786 3.9098 -0.9651 9 6 2.7733 3.3181 -3.0274 10 8 1.9612 2.8009 -3.7649 11 7 3.6790 4.1841 -3.5239 12 6 4.6656 4.8229 -2.6421 13 6 4.5912 6.3374 -2.8273 14 6 4.7599 6.6768 -4.3100 15 6 4.7172 8.1952 -4.4934 16 7 5.8699 8.8008 -3.8220 17 6 6.0433 10.1589 -3.8508 18 1 5.3305 10.7834 -4.3688 19 6 7.1352 10.7328 -3.2142 20 7 8.0036 9.9717 -2.5825 21 14 7.3722 12.5853 -3.2540 22 1 6.2661 13.2093 -4.0238 23 1 7.3704 13.1144 -1.8665 24 1 8.6686 12.9046 -3.9040 25 6 3.6276 6.0340 -5.1143 26 6 3.6949 4.5114 -4.9561 27 8 1.6938 2.0833 -1.2392 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8921 1.9883 1.0052 34 1 3.9674 0.4371 0.1141 35 1 4.3282 1.5136 -1.9471 36 1 4.8627 2.8936 -0.9314 37 1 4.4451 4.5717 -1.6047 38 1 5.6657 4.4747 -2.9001 39 1 5.3846 6.8148 -2.2522 40 1 3.6228 6.6973 -2.4796 41 1 5.7180 6.2952 -4.6629 42 1 4.7493 8.4338 -5.5565 43 1 3.7970 8.5877 -4.0605 44 1 6.5099 8.2399 -3.3565 45 1 8.7668 10.3727 -2.1380 46 1 3.7352 6.2954 -6.1669 47 1 2.6681 6.3963 -4.7452 48 1 4.6146 4.1373 -5.4062 49 1 2.8344 4.0547 -5.4449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205410360.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:31 Heat of formation + Delta-G solvation = -104.125824 kcal Electronic energy + Delta-G solvation = -26531.388078 eV Core-core repulsion = 22878.130395 eV Total energy + Delta-G solvation = -3653.257682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.72538 -40.15413 -38.76203 -36.58066 -34.76428 -34.42916 -33.26178 -32.31684 -31.93347 -29.74693 -28.11201 -25.93504 -24.92112 -24.34743 -23.24395 -22.73691 -21.86008 -21.48621 -20.15333 -19.16449 -18.34208 -17.57428 -17.26692 -16.77660 -16.68216 -15.97121 -15.70323 -15.44717 -15.40666 -15.30910 -14.79311 -14.60388 -14.47045 -14.34483 -14.17684 -13.99521 -13.72577 -13.53636 -13.15081 -12.99418 -12.87161 -12.77836 -12.68075 -12.44896 -12.20399 -12.10910 -11.98422 -11.95870 -11.73599 -11.67447 -11.55730 -11.37719 -11.32365 -10.94120 -10.90525 -10.54939 -9.71901 -8.96726 -7.94386 -5.21712 1.44962 1.48205 1.48687 1.58417 1.74507 2.56748 2.86889 3.30567 3.39314 3.54322 3.74808 3.75683 3.82707 3.89829 3.94382 4.06734 4.09777 4.17286 4.28353 4.29441 4.37293 4.39414 4.42283 4.58294 4.60005 4.70587 4.75178 4.78449 4.84791 4.88013 4.90820 4.96736 5.01018 5.05021 5.06981 5.07821 5.15281 5.17409 5.24319 5.29695 5.41611 5.48406 5.54528 5.55363 5.89315 6.29089 6.31323 7.06095 7.36055 8.11899 8.36802 9.29061 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023747 B = 0.002597 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.828065 B =10779.833557 C =11459.963399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.062 3.938 4 H 0.080 0.920 5 C -0.144 4.144 6 C -0.141 4.141 7 C 0.057 3.943 8 H 0.111 0.889 9 C 0.517 3.483 10 O -0.576 6.576 11 N -0.601 5.601 12 C 0.108 3.892 13 C -0.122 4.122 14 C -0.084 4.084 15 C 0.157 3.843 16 N -0.741 5.741 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.072 4.072 20 N -0.965 5.965 21 Si 0.969 3.031 22 H -0.270 1.270 23 H -0.292 1.292 24 H -0.293 1.293 25 C -0.116 4.116 26 C 0.115 3.885 27 O -0.376 6.376 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.017 0.983 43 H 0.013 0.987 44 H 0.377 0.623 45 H 0.252 0.748 46 H 0.088 0.912 47 H 0.058 0.942 48 H 0.085 0.915 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.705 -20.505 6.256 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.005 3.995 4 H 0.098 0.902 5 C -0.181 4.181 6 C -0.178 4.178 7 C -0.004 4.004 8 H 0.128 0.872 9 C 0.305 3.695 10 O -0.455 6.455 11 N -0.334 5.334 12 C -0.014 4.014 13 C -0.160 4.160 14 C -0.102 4.102 15 C 0.030 3.970 16 N -0.384 5.384 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.265 4.265 20 N -0.616 5.616 21 Si 0.799 3.201 22 H -0.195 1.195 23 H -0.219 1.219 24 H -0.220 1.220 25 C -0.154 4.154 26 C -0.007 4.007 27 O -0.296 6.296 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.035 0.965 43 H 0.031 0.969 44 H 0.210 0.790 45 H 0.060 0.940 46 H 0.106 0.894 47 H 0.077 0.923 48 H 0.103 0.897 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.393 -20.651 5.688 23.389 hybrid contribution 0.478 1.248 0.015 1.336 sum -8.914 -19.404 5.703 22.102 Atomic orbital electron populations 1.21720 0.95810 1.01876 1.01433 1.21750 0.96518 0.94372 1.03113 1.23144 0.95641 0.94517 0.86183 0.90243 1.23064 0.93687 1.02923 0.98445 1.23252 0.96202 0.99682 0.98696 1.23079 0.89542 0.95939 0.91851 0.87203 1.20707 0.79849 0.78458 0.90466 1.90670 1.39991 1.53428 1.61433 1.48138 1.32798 1.42906 1.09583 1.21994 0.92521 0.91876 0.94997 1.21769 1.02338 0.95473 0.96414 1.21188 0.99162 0.94008 0.95885 1.20811 0.89321 0.92174 0.94689 1.42537 1.27660 1.03956 1.64256 1.19631 1.06094 0.85094 1.26815 0.91175 1.25485 0.97834 1.01925 1.01249 1.69788 1.15444 1.35265 1.41127 0.85136 0.77367 0.80662 0.76973 1.19471 1.21928 1.22035 1.21825 0.98192 0.94162 1.01262 1.21641 1.03311 0.95215 0.80553 1.89004 1.42095 1.56933 1.41542 0.91808 0.92054 0.94558 0.92391 0.88225 0.88024 0.88738 0.90918 0.86711 0.87494 0.89212 0.91049 0.92436 0.90852 0.96494 0.96919 0.78985 0.93953 0.89399 0.92329 0.89700 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.82 71.98 0.71 -1.70 16 2 C -0.12 -1.74 5.42 30.59 0.17 -1.57 16 3 C 0.06 1.00 3.42 30.97 0.11 1.11 16 4 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 5 C -0.14 -1.60 6.65 31.64 0.21 -1.39 16 6 C -0.14 -2.01 5.88 31.96 0.19 -1.82 16 7 C 0.06 1.19 2.76 30.53 0.08 1.27 16 8 H 0.11 1.95 7.49 -2.39 -0.02 1.93 16 9 C 0.52 14.14 7.12 87.66 0.62 14.76 16 10 O -0.58 -20.95 15.98 15.19 0.24 -20.71 16 11 N -0.60 -14.07 2.98 -819.65 -2.44 -16.51 16 12 C 0.11 2.12 5.61 86.22 0.48 2.61 16 13 C -0.12 -3.24 5.23 30.53 0.16 -3.08 16 14 C -0.08 -2.42 2.19 -10.76 -0.02 -2.45 16 15 C 0.16 6.03 5.65 86.38 0.49 6.52 16 16 N -0.74 -36.22 5.32 -343.44 -1.83 -38.05 16 17 C -0.24 -13.45 9.99 84.03 0.84 -12.61 16 18 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 19 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 20 N -0.97 -57.21 13.06 21.65 0.28 -56.93 16 21 Si 0.97 45.47 29.55 68.60 2.03 47.49 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 25 C -0.12 -2.85 5.36 30.69 0.16 -2.68 16 26 C 0.11 2.69 6.44 86.38 0.56 3.25 16 27 O -0.38 -9.45 10.09 -130.75 -1.32 -10.77 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 0.77 7.89 -2.38 -0.02 0.75 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 0.85 7.70 -2.39 -0.02 0.83 16 35 H 0.07 1.20 8.05 -2.39 -0.02 1.18 16 36 H 0.11 1.13 6.53 -2.38 -0.02 1.11 16 37 H 0.11 1.60 4.57 -2.39 -0.01 1.59 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 2.21 7.15 -2.38 -0.02 2.19 16 40 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 42 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.38 19.13 6.84 -92.71 -0.63 18.50 16 45 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 46 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 49 H 0.08 2.09 7.00 -2.39 -0.02 2.07 16 Total: -1.00 -72.17 378.68 2.47 -69.69 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.29 Total: 27.17 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 5.22 Total: -1.39 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -3.98 Total: -111.49 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.08 Total: -31.48 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.17 2.47 -69.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205410360.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.432 kcal (2) G-P(sol) polarization free energy of solvation -72.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds