Wall clock time and date at job start Tue Mar 31 2020 10:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47157 * 2 1 4 4 H 1.09009 * 110.43740 * 51.92218 * 3 2 1 5 5 C 1.55235 * 110.48040 * 289.27435 * 3 2 1 6 6 C 1.54994 * 101.90156 * 220.45966 * 5 3 2 7 7 O 1.44379 * 103.63434 * 37.00926 * 6 5 3 8 8 C 1.43751 * 106.97790 * 319.86569 * 7 6 5 9 9 H 1.09003 * 109.87257 * 267.08811 * 8 7 6 10 10 C 1.50697 * 109.88294 * 146.08376 * 8 7 6 11 11 O 1.21281 * 120.00146 * 338.36888 * 10 8 7 12 12 N 1.34777 * 119.99829 * 158.37062 * 10 8 7 13 13 C 1.46926 * 120.63205 * 4.63189 * 12 10 8 14 14 C 1.53620 * 108.54034 * 126.37045 * 13 12 10 15 15 C 1.53043 * 109.24191 * 54.85930 * 14 13 12 16 16 C 1.53009 * 109.45999 * 178.48990 * 15 14 13 17 17 N 1.46500 * 109.46709 * 295.06730 * 16 15 14 18 18 C 1.36934 * 119.99425 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00508 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99757 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00279 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00032 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47254 * 59.99753 * 22 20 18 24 24 H 1.48496 * 109.47365 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.46973 * 300.00032 * 22 20 18 26 26 C 1.53041 * 109.53596 * 298.50771 * 15 14 13 27 27 C 1.46925 * 120.62810 * 184.91912 * 12 10 8 28 28 H 1.09002 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47373 * 300.00287 * 1 2 3 30 30 H 1.09002 * 109.47335 * 60.00053 * 1 2 3 31 31 H 1.08999 * 109.46921 * 239.99726 * 2 1 3 32 32 H 1.08999 * 109.46746 * 120.00396 * 2 1 3 33 33 H 1.08996 * 111.07298 * 102.29059 * 5 3 2 34 34 H 1.09003 * 110.91859 * 338.55486 * 5 3 2 35 35 H 1.09003 * 110.61775 * 278.43084 * 6 5 3 36 36 H 1.08997 * 110.62275 * 155.59140 * 6 5 3 37 37 H 1.08995 * 109.58730 * 246.20727 * 13 12 10 38 38 H 1.09002 * 109.58722 * 6.63298 * 13 12 10 39 39 H 1.09002 * 109.63655 * 294.87023 * 14 13 12 40 40 H 1.09000 * 109.45704 * 174.74340 * 14 13 12 41 41 H 1.08999 * 109.46194 * 58.53105 * 15 14 13 42 42 H 1.08995 * 109.46797 * 55.06583 * 16 15 14 43 43 H 1.08998 * 109.46747 * 175.06970 * 16 15 14 44 44 H 0.96994 * 120.00347 * 0.02562 * 17 16 15 45 45 H 0.97000 * 120.00420 * 179.97438 * 21 20 18 46 46 H 1.08990 * 109.49766 * 301.41324 * 26 15 14 47 47 H 1.09005 * 109.52197 * 181.33127 * 26 15 14 48 48 H 1.08999 * 109.58825 * 353.36851 * 27 12 10 49 49 H 1.08998 * 109.58904 * 113.79615 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5729 2.0113 0.8041 5 6 1.7684 2.1145 -1.3727 6 6 3.0744 2.9180 -1.5991 7 8 4.1015 2.0559 -1.0639 8 6 3.5744 1.4720 0.1393 9 1 3.8569 2.0782 1.0000 10 6 4.1042 0.0708 0.3036 11 8 4.5200 -0.5372 -0.6599 12 7 4.1159 -0.5067 1.5213 13 6 3.5236 0.1763 2.6795 14 6 2.5088 -0.7701 3.3384 15 6 3.1986 -2.0941 3.6751 16 6 2.2018 -3.0271 4.3659 17 7 1.8095 -2.4536 5.6556 18 6 0.9194 -3.1170 6.4573 19 1 0.5062 -4.0627 6.1387 20 6 0.5479 -2.5740 7.6797 21 7 1.0517 -1.4219 8.0683 22 14 -0.6658 -3.4793 8.7737 23 1 -0.1156 -4.8128 9.1259 24 1 -0.8953 -2.6948 10.0135 25 1 -1.9520 -3.6495 8.0511 26 6 3.7032 -2.7502 2.3878 27 6 4.7267 -1.8286 1.7170 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 0.9067 2.7798 -1.3197 34 1 1.6325 1.3654 -2.1527 35 1 3.0435 3.8619 -1.0549 36 1 3.2371 3.0945 -2.6623 37 1 4.3069 0.4310 3.3934 38 1 3.0181 1.0838 2.3493 39 1 1.6816 -0.9550 2.6529 40 1 2.1286 -0.3151 4.2530 41 1 4.0408 -1.9057 4.3410 42 1 1.3193 -3.1453 3.7373 43 1 2.6663 -3.9999 4.5269 44 1 2.1802 -1.6042 5.9417 45 1 0.7919 -1.0422 8.9223 46 1 2.8649 -2.9163 1.7114 47 1 4.1736 -3.7043 2.6255 48 1 5.0153 -2.2443 0.7517 49 1 5.6061 -1.7341 2.3541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205484683.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:08 Heat of formation + Delta-G solvation = -78.537618 kcal Electronic energy + Delta-G solvation = -27575.295697 eV Core-core repulsion = 23923.147603 eV Total energy + Delta-G solvation = -3652.148094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.09380 -39.05585 -37.44213 -35.15228 -34.71205 -32.90558 -31.40802 -30.51288 -30.33688 -29.37778 -26.65988 -24.36311 -23.62358 -23.22905 -22.97896 -21.84828 -20.90110 -20.00490 -18.90150 -17.49521 -17.04015 -16.69429 -16.45048 -15.37165 -15.12238 -14.92516 -14.83855 -14.57282 -14.22351 -13.86189 -13.74132 -13.62355 -13.40638 -13.27187 -12.79299 -12.75137 -12.45063 -12.37591 -12.09931 -11.86623 -11.80174 -11.49613 -11.34014 -11.19034 -11.03045 -10.90938 -10.85299 -10.76900 -10.43980 -10.34076 -10.30208 -10.17529 -10.01714 -9.65664 -9.44286 -8.88572 -8.59825 -6.93434 -5.78830 -3.06813 2.48634 2.77977 3.42455 3.47104 3.47845 3.76123 4.09216 4.29515 4.38878 4.57173 4.66722 4.81295 4.88249 4.93331 5.00783 5.04527 5.09853 5.15608 5.20145 5.24856 5.34772 5.36791 5.41309 5.47476 5.54107 5.58094 5.61766 5.64071 5.78856 5.79622 5.90600 5.95524 5.96944 6.01391 6.06806 6.13885 6.19636 6.26406 6.38928 6.47270 6.55871 6.63048 6.79116 6.90372 7.34669 7.68078 8.13544 8.40621 9.51815 10.09825 10.44607 11.44054 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020201 B = 0.003274 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.757691 B = 8551.237838 C = 9126.998407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C -0.109 4.109 4 H 0.094 0.906 5 C -0.147 4.147 6 C 0.044 3.956 7 O -0.351 6.351 8 C 0.061 3.939 9 H 0.090 0.910 10 C 0.525 3.475 11 O -0.529 6.529 12 N -0.609 5.609 13 C 0.102 3.898 14 C -0.126 4.126 15 C -0.094 4.094 16 C 0.158 3.842 17 N -0.731 5.731 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.126 4.126 27 C 0.114 3.886 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 8.458 -17.690 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C -0.128 4.128 4 H 0.112 0.888 5 C -0.185 4.185 6 C -0.032 4.032 7 O -0.269 6.269 8 C 0.000 4.000 9 H 0.108 0.892 10 C 0.312 3.688 11 O -0.405 6.405 12 N -0.344 5.344 13 C -0.021 4.021 14 C -0.164 4.164 15 C -0.113 4.113 16 C 0.031 3.969 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.164 4.164 27 C -0.008 4.008 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.108 0.892 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.862 7.977 -18.238 20.277 hybrid contribution -0.820 -0.093 1.041 1.328 sum 3.042 7.884 -17.197 19.161 Atomic orbital electron populations 1.21733 0.94952 1.02107 1.01738 1.21955 0.96888 0.94657 1.03907 1.22631 0.92663 0.98589 0.98909 0.88753 1.23306 0.98420 0.99844 0.96903 1.23614 0.86513 0.93183 0.99917 1.88969 1.37603 1.61321 1.38984 1.22804 0.94132 0.92850 0.90242 0.89234 1.20210 0.78109 0.87767 0.82706 1.90680 1.47060 1.64396 1.38397 1.48136 1.58536 1.19645 1.08062 1.22025 0.96909 0.95628 0.87503 1.22065 0.97243 0.95616 1.01488 1.21306 0.98940 0.95281 0.95727 1.20665 0.94229 0.94266 0.87765 1.42358 1.53057 1.25257 1.16914 1.19189 1.17166 1.02538 0.98123 0.91344 1.24714 1.00796 0.97362 0.98067 1.69634 1.47517 1.18823 1.22364 0.86281 0.81108 0.78782 0.80100 1.21307 1.21694 1.21311 1.21913 0.98973 0.98446 0.97101 1.21625 0.95418 0.82065 1.01720 0.92411 0.92360 0.92893 0.91302 0.89829 0.89766 0.90026 0.91879 0.88654 0.90869 0.90186 0.91387 0.89265 0.90922 0.96459 0.96382 0.78284 0.93497 0.91604 0.90620 0.89228 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.80 37.16 0.36 -1.06 16 2 C -0.14 -1.48 4.17 -26.74 -0.11 -1.60 16 3 C -0.11 -1.03 2.33 -88.86 -0.21 -1.24 16 4 H 0.09 0.75 8.04 -51.92 -0.42 0.34 16 5 C -0.15 -1.20 6.08 -24.49 -0.15 -1.35 16 6 C 0.04 0.38 7.71 38.21 0.29 0.68 16 7 O -0.35 -4.52 10.83 -53.75 -0.58 -5.11 16 8 C 0.06 0.70 2.90 -27.31 -0.08 0.62 16 9 H 0.09 0.87 6.90 -51.93 -0.36 0.51 16 10 C 0.52 7.30 4.87 -10.99 -0.05 7.24 16 11 O -0.53 -9.28 15.93 -12.97 -0.21 -9.49 16 12 N -0.61 -7.53 2.28 -172.51 -0.39 -7.93 16 13 C 0.10 1.14 5.44 -3.49 -0.02 1.12 16 14 C -0.13 -1.72 5.05 -26.39 -0.13 -1.85 16 15 C -0.09 -1.39 2.19 -90.57 -0.20 -1.59 16 16 C 0.16 3.05 5.65 -4.04 -0.02 3.02 16 17 N -0.73 -17.77 5.32 -59.91 -0.32 -18.09 16 18 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 19 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 22 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.13 -1.59 5.36 -26.61 -0.14 -1.73 16 27 C 0.11 1.39 6.44 -3.71 -0.02 1.37 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.44 7.64 -51.93 -0.40 0.05 16 31 H 0.07 0.87 7.61 -51.93 -0.39 0.48 16 32 H 0.08 1.00 3.51 -51.93 -0.18 0.82 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.73 7.77 -51.93 -0.40 0.32 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.76 5.21 -51.93 -0.27 0.49 16 39 H 0.07 0.94 6.37 -51.93 -0.33 0.61 16 40 H 0.09 1.41 7.15 -51.93 -0.37 1.04 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 9.64 6.84 -40.82 -0.28 9.36 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -32.62 369.63 -9.34 -41.97 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.39 Total: 6.36 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.73 Total: -3.55 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.01 Total: -52.83 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.79 Total: -14.60 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.62 -9.34 -41.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205484683.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.568 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds