Wall clock time and date at job start Tue Mar 31 2020 10:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47157 * 2 1 4 4 H 1.09009 * 110.43740 * 51.92218 * 3 2 1 5 5 C 1.55235 * 110.48040 * 289.27435 * 3 2 1 6 6 C 1.54994 * 101.90156 * 220.45966 * 5 3 2 7 7 O 1.44379 * 103.63434 * 37.00926 * 6 5 3 8 8 C 1.43751 * 106.97790 * 319.86569 * 7 6 5 9 9 H 1.09003 * 109.87257 * 267.08811 * 8 7 6 10 10 C 1.50697 * 109.88294 * 146.08376 * 8 7 6 11 11 O 1.21281 * 120.00146 * 338.36888 * 10 8 7 12 12 N 1.34777 * 119.99829 * 158.37062 * 10 8 7 13 13 C 1.46926 * 120.63205 * 4.63189 * 12 10 8 14 14 C 1.53620 * 108.54034 * 126.37045 * 13 12 10 15 15 C 1.53043 * 109.24191 * 54.85930 * 14 13 12 16 16 C 1.53009 * 109.45999 * 178.48990 * 15 14 13 17 17 N 1.46500 * 109.46709 * 295.06730 * 16 15 14 18 18 C 1.36934 * 119.99425 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00508 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99757 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00279 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00032 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47254 * 59.99753 * 22 20 18 24 24 H 1.48496 * 109.47365 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.46973 * 300.00032 * 22 20 18 26 26 C 1.53041 * 109.53596 * 298.50771 * 15 14 13 27 27 C 1.46925 * 120.62810 * 184.91912 * 12 10 8 28 28 H 1.09002 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47373 * 300.00287 * 1 2 3 30 30 H 1.09002 * 109.47335 * 60.00053 * 1 2 3 31 31 H 1.08999 * 109.46921 * 239.99726 * 2 1 3 32 32 H 1.08999 * 109.46746 * 120.00396 * 2 1 3 33 33 H 1.08996 * 111.07298 * 102.29059 * 5 3 2 34 34 H 1.09003 * 110.91859 * 338.55486 * 5 3 2 35 35 H 1.09003 * 110.61775 * 278.43084 * 6 5 3 36 36 H 1.08997 * 110.62275 * 155.59140 * 6 5 3 37 37 H 1.08995 * 109.58730 * 246.20727 * 13 12 10 38 38 H 1.09002 * 109.58722 * 6.63298 * 13 12 10 39 39 H 1.09002 * 109.63655 * 294.87023 * 14 13 12 40 40 H 1.09000 * 109.45704 * 174.74340 * 14 13 12 41 41 H 1.08999 * 109.46194 * 58.53105 * 15 14 13 42 42 H 1.08995 * 109.46797 * 55.06583 * 16 15 14 43 43 H 1.08998 * 109.46747 * 175.06970 * 16 15 14 44 44 H 0.96994 * 120.00347 * 0.02562 * 17 16 15 45 45 H 0.97000 * 120.00420 * 179.97438 * 21 20 18 46 46 H 1.08990 * 109.49766 * 301.41324 * 26 15 14 47 47 H 1.09005 * 109.52197 * 181.33127 * 26 15 14 48 48 H 1.08999 * 109.58825 * 353.36851 * 27 12 10 49 49 H 1.08998 * 109.58904 * 113.79615 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5729 2.0113 0.8041 5 6 1.7684 2.1145 -1.3727 6 6 3.0744 2.9180 -1.5991 7 8 4.1015 2.0559 -1.0639 8 6 3.5744 1.4720 0.1393 9 1 3.8569 2.0782 1.0000 10 6 4.1042 0.0708 0.3036 11 8 4.5200 -0.5372 -0.6599 12 7 4.1159 -0.5067 1.5213 13 6 3.5236 0.1763 2.6795 14 6 2.5088 -0.7701 3.3384 15 6 3.1986 -2.0941 3.6751 16 6 2.2018 -3.0271 4.3659 17 7 1.8095 -2.4536 5.6556 18 6 0.9194 -3.1170 6.4573 19 1 0.5062 -4.0627 6.1387 20 6 0.5479 -2.5740 7.6797 21 7 1.0517 -1.4219 8.0683 22 14 -0.6658 -3.4793 8.7737 23 1 -0.1156 -4.8128 9.1259 24 1 -0.8953 -2.6948 10.0135 25 1 -1.9520 -3.6495 8.0511 26 6 3.7032 -2.7502 2.3878 27 6 4.7267 -1.8286 1.7170 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 0.9067 2.7798 -1.3197 34 1 1.6325 1.3654 -2.1527 35 1 3.0435 3.8619 -1.0549 36 1 3.2371 3.0945 -2.6623 37 1 4.3069 0.4310 3.3934 38 1 3.0181 1.0838 2.3493 39 1 1.6816 -0.9550 2.6529 40 1 2.1286 -0.3151 4.2530 41 1 4.0408 -1.9057 4.3410 42 1 1.3193 -3.1453 3.7373 43 1 2.6663 -3.9999 4.5269 44 1 2.1802 -1.6042 5.9417 45 1 0.7919 -1.0422 8.9223 46 1 2.8649 -2.9163 1.7114 47 1 4.1736 -3.7043 2.6255 48 1 5.0153 -2.2443 0.7517 49 1 5.6061 -1.7341 2.3541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205484683.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:07 Heat of formation + Delta-G solvation = -97.996304 kcal Electronic energy + Delta-G solvation = -27576.139489 eV Core-core repulsion = 23923.147603 eV Total energy + Delta-G solvation = -3652.991886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.04261 -40.00331 -38.63588 -36.59444 -35.71916 -34.46523 -32.64931 -31.91708 -31.25076 -30.31091 -28.11347 -25.73847 -24.75931 -24.27530 -23.97412 -23.03564 -21.96774 -21.08834 -19.94675 -19.12603 -18.30832 -17.55456 -17.40605 -16.69241 -16.33406 -16.02436 -15.76196 -15.69348 -15.50692 -15.30826 -15.19526 -14.68450 -14.42884 -14.30777 -14.02252 -13.91118 -13.72266 -13.41084 -13.11082 -13.05459 -12.89159 -12.71738 -12.60149 -12.26469 -12.22857 -12.14405 -12.10648 -11.93901 -11.74057 -11.66995 -11.57359 -11.43533 -11.26058 -11.06679 -10.89369 -10.41773 -9.66158 -8.95580 -7.92814 -5.20251 1.46718 1.49022 1.50874 1.57079 1.80795 2.57834 2.96956 3.28482 3.40565 3.45052 3.63783 3.75986 3.80813 3.87048 3.98192 4.11310 4.12891 4.26122 4.28863 4.32506 4.37938 4.41718 4.45325 4.49304 4.59347 4.69850 4.72738 4.78960 4.79376 4.84614 4.87207 4.95723 4.97229 5.02669 5.08285 5.10616 5.13181 5.18525 5.23122 5.30029 5.38912 5.49792 5.55691 5.58149 5.80127 6.30001 6.33475 7.09329 7.37195 8.13341 8.38119 9.30126 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.020201 B = 0.003274 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.757691 B = 8551.237838 C = 9126.998407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C -0.107 4.107 4 H 0.118 0.882 5 C -0.142 4.142 6 C 0.039 3.961 7 O -0.384 6.384 8 C 0.059 3.941 9 H 0.112 0.888 10 C 0.521 3.479 11 O -0.574 6.574 12 N -0.605 5.605 13 C 0.108 3.892 14 C -0.119 4.119 15 C -0.083 4.083 16 C 0.158 3.842 17 N -0.740 5.740 18 C -0.247 4.247 19 H 0.070 0.930 20 C -0.070 4.070 21 N -0.965 5.965 22 Si 0.968 3.032 23 H -0.281 1.281 24 H -0.294 1.294 25 H -0.279 1.279 26 C -0.114 4.114 27 C 0.115 3.885 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.014 0.986 43 H 0.015 0.985 44 H 0.377 0.623 45 H 0.251 0.749 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.948 9.510 -17.896 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C -0.125 4.125 4 H 0.136 0.864 5 C -0.180 4.180 6 C -0.037 4.037 7 O -0.303 6.303 8 C -0.002 4.002 9 H 0.129 0.871 10 C 0.310 3.690 11 O -0.453 6.453 12 N -0.339 5.339 13 C -0.014 4.014 14 C -0.157 4.157 15 C -0.102 4.102 16 C 0.032 3.968 17 N -0.383 5.383 18 C -0.379 4.379 19 H 0.088 0.912 20 C -0.263 4.263 21 N -0.616 5.616 22 Si 0.798 3.202 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.205 1.205 26 C -0.153 4.153 27 C -0.007 4.007 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.210 0.790 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.272 9.012 -18.458 20.800 hybrid contribution -0.624 -0.475 1.045 1.306 sum 2.648 8.537 -17.414 19.574 Atomic orbital electron populations 1.21705 0.93957 1.01817 1.02670 1.21864 0.97683 0.95465 1.01982 1.22698 0.91350 0.97864 1.00637 0.86375 1.23304 0.99300 0.99803 0.95551 1.23869 0.85642 0.93455 1.00729 1.88937 1.39520 1.62217 1.39665 1.22946 0.95163 0.91301 0.90760 0.87091 1.20767 0.77286 0.88703 0.82267 1.90653 1.49188 1.65695 1.39791 1.48185 1.57952 1.19606 1.08113 1.22057 0.96704 0.95543 0.87107 1.21936 0.97763 0.95321 1.00655 1.21185 0.97697 0.95177 0.96176 1.20793 0.95061 0.94971 0.86021 1.42514 1.52599 1.25002 1.18232 1.19557 1.17172 1.02593 0.98575 0.91203 1.25465 1.02915 0.98349 0.99556 1.69775 1.49002 1.20216 1.22571 0.85292 0.79204 0.77637 0.78102 1.20728 1.22025 1.20546 1.21800 0.98917 0.98892 0.95682 1.21614 0.95685 0.82049 1.01396 0.93395 0.91807 0.91478 0.93847 0.91133 0.87032 0.91347 0.89600 0.87850 0.89667 0.87883 0.91651 0.91260 0.91119 0.96798 0.96658 0.79024 0.93973 0.92213 0.89578 0.90146 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.80 71.98 0.71 -1.88 16 2 C -0.13 -2.76 4.17 30.59 0.13 -2.64 16 3 C -0.11 -1.78 2.33 -9.66 -0.02 -1.81 16 4 H 0.12 1.45 8.04 -2.38 -0.02 1.43 16 5 C -0.14 -1.98 6.08 32.04 0.19 -1.78 16 6 C 0.04 0.58 7.71 72.66 0.56 1.14 16 7 O -0.38 -9.45 10.83 -131.27 -1.42 -10.88 16 8 C 0.06 1.26 2.90 30.22 0.09 1.34 16 9 H 0.11 1.84 6.90 -2.39 -0.02 1.82 16 10 C 0.52 14.17 4.87 87.66 0.43 14.60 16 11 O -0.57 -20.47 15.93 14.68 0.23 -20.24 16 12 N -0.60 -14.31 2.28 -818.08 -1.87 -16.18 16 13 C 0.11 2.21 5.44 86.51 0.47 2.68 16 14 C -0.12 -3.13 5.05 30.82 0.16 -2.98 16 15 C -0.08 -2.42 2.19 -10.76 -0.02 -2.44 16 16 C 0.16 6.05 5.65 86.38 0.49 6.53 16 17 N -0.74 -36.05 5.32 -343.44 -1.83 -37.88 16 18 C -0.25 -13.54 9.99 84.03 0.84 -12.70 16 19 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 20 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 21 N -0.97 -57.09 13.06 21.65 0.28 -56.81 16 22 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 C -0.11 -2.80 5.36 30.67 0.16 -2.63 16 27 C 0.11 2.71 6.44 86.36 0.56 3.27 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.00 7.64 -2.39 -0.02 0.98 16 31 H 0.04 1.12 7.61 -2.39 -0.02 1.10 16 32 H 0.07 1.64 3.51 -2.39 -0.01 1.63 16 33 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.14 7.77 -2.39 -0.02 1.12 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.66 5.21 -2.39 -0.01 1.65 16 39 H 0.06 1.76 6.37 -2.39 -0.02 1.75 16 40 H 0.07 2.15 7.15 -2.39 -0.02 2.13 16 41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.38 19.12 6.84 -92.71 -0.63 18.49 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 46 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 48 H 0.08 2.10 7.00 -2.39 -0.02 2.09 16 49 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -70.76 369.63 2.93 -67.84 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.30 Total: 29.61 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.20 Total: -2.76 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -3.41 Total: -110.87 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -1.19 Total: -31.11 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -70.76 2.93 -67.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205484683.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.160 kcal (2) G-P(sol) polarization free energy of solvation -70.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds