Wall clock time and date at job start Tue Mar 31 2020 09:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52994 * 109.47286 * 239.99698 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.47062 * 136.06058 * 359.36332 * 8 6 5 10 10 C 1.53238 * 88.08170 * 207.19683 * 9 8 6 11 11 C 1.52999 * 114.32610 * 220.46164 * 10 9 8 12 12 C 1.52995 * 109.47732 * 268.75929 * 11 10 9 13 13 N 1.46899 * 109.47447 * 179.97438 * 12 11 10 14 14 C 1.47481 * 110.99777 * 74.02877 * 13 12 11 15 15 C 1.53522 * 87.92936 * 138.70463 * 14 13 12 16 16 C 1.50693 * 114.17085 * 220.32808 * 15 14 13 17 17 H 1.08001 * 119.99808 * 93.83881 * 16 15 14 18 18 C 1.37875 * 120.00570 * 273.84501 * 16 15 14 19 19 N 1.31515 * 119.99668 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00513 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47242 * 89.99795 * 20 18 16 22 22 H 1.48502 * 109.47153 * 209.99774 * 20 18 16 23 23 H 1.48496 * 109.46994 * 330.00031 * 20 18 16 24 24 C 1.47477 * 111.00414 * 170.00538 * 13 12 11 25 25 C 1.47070 * 136.05208 * 179.72516 * 8 6 5 26 26 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 27 27 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 28 28 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 31 31 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 32 32 H 1.08995 * 109.47307 * 299.99583 * 4 2 1 33 33 H 1.08999 * 109.47211 * 60.00515 * 4 2 1 34 34 H 1.09010 * 109.46887 * 180.02562 * 4 2 1 35 35 H 1.09003 * 113.46647 * 321.92586 * 9 8 6 36 36 H 1.09001 * 113.47023 * 92.37230 * 9 8 6 37 37 H 1.09007 * 114.01505 * 87.71657 * 10 9 8 38 38 H 1.09000 * 109.46935 * 28.76855 * 11 10 9 39 39 H 1.09007 * 109.46548 * 148.75997 * 11 10 9 40 40 H 1.08990 * 109.47532 * 300.00394 * 12 11 10 41 41 H 1.09001 * 109.46712 * 60.00123 * 12 11 10 42 42 H 1.08998 * 113.47803 * 253.46814 * 14 13 12 43 43 H 1.08997 * 113.47237 * 23.94458 * 14 13 12 44 44 H 1.08999 * 114.33851 * 87.63417 * 15 14 13 45 45 H 0.97001 * 120.00280 * 179.97438 * 19 18 16 46 46 H 1.09007 * 113.47263 * 336.06590 * 24 13 12 47 47 H 1.08994 * 113.48288 * 106.52823 * 24 13 12 48 48 H 1.09000 * 113.46729 * 267.62123 * 25 8 6 49 49 H 1.08999 * 113.47113 * 38.06704 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 2.8912 -2.3856 3.6029 10 6 3.2340 -3.8784 3.6500 11 6 3.2660 -4.4735 5.0592 12 6 4.6850 -4.3748 5.6225 13 7 4.7156 -4.9456 6.9757 14 6 4.6410 -6.4178 6.9301 15 6 5.7022 -6.4504 8.0390 16 6 6.7444 -7.5247 7.8644 17 1 7.6751 -7.2981 7.3656 18 6 6.5098 -8.7969 8.3412 19 7 5.3766 -9.0728 8.9489 20 14 7.8014 -10.1288 8.1241 21 1 8.7158 -10.1271 9.2941 22 1 7.1353 -11.4518 8.0184 23 1 8.5800 -9.8663 6.8871 24 6 6.1018 -5.0865 7.4589 25 6 1.8854 -4.0306 2.9329 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6768 -1.7489 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2488 35 1 3.7515 -1.7507 3.3909 36 1 2.3170 -2.0447 4.4644 37 1 4.0965 -4.1550 3.0435 38 1 2.5805 -3.9216 5.7023 39 1 2.9632 -5.5199 5.0186 40 1 5.3705 -4.9266 4.9795 41 1 4.9878 -3.3285 5.6631 42 1 3.6745 -6.8135 7.2422 43 1 4.9859 -6.8410 5.9867 44 1 5.2971 -6.4039 9.0499 45 1 5.2113 -9.9679 9.2841 46 1 6.8365 -5.1544 6.6564 47 1 6.3734 -4.3540 8.2189 48 1 1.0407 -4.1322 3.6143 49 1 1.8921 -4.7915 2.1525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207761484.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:48 Heat of formation + Delta-G solvation = -14.647820 kcal Electronic energy + Delta-G solvation = -25599.763616 eV Core-core repulsion = 21950.385991 eV Total energy + Delta-G solvation = -3649.377625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10155 -39.78680 -38.82937 -36.78215 -34.34209 -33.37187 -32.23175 -29.47685 -27.73318 -27.68082 -26.98109 -26.28474 -24.86643 -24.40347 -22.39376 -21.08412 -20.40159 -19.43745 -18.60741 -17.95394 -16.91132 -16.64824 -16.52238 -15.68824 -15.28958 -14.93980 -14.76622 -14.55573 -14.39160 -14.02156 -13.83140 -13.53601 -13.07340 -12.89003 -12.78785 -12.63810 -12.45927 -12.20494 -12.19162 -11.97838 -11.74139 -11.66924 -11.52624 -11.33817 -11.26851 -11.08807 -10.87933 -10.76248 -10.63392 -10.45735 -10.21372 -10.12676 -9.70017 -9.19814 -9.00214 -8.92821 -8.45089 -8.00210 -6.06810 -4.11196 1.76152 2.66499 3.27666 3.34917 3.37311 3.55090 4.07570 4.38571 4.40020 4.44184 4.58355 4.63026 4.73311 4.96641 5.05363 5.14207 5.21456 5.21675 5.23348 5.25949 5.32128 5.36313 5.39177 5.43009 5.47326 5.54000 5.58018 5.67177 5.70716 5.86208 5.97663 5.99379 6.02160 6.09440 6.20463 6.26958 6.31914 6.44399 6.50082 6.67493 6.75847 7.13194 7.16792 7.49877 7.71630 7.90358 8.08214 8.13342 8.36315 8.92006 9.53830 11.02749 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.033122 B = 0.001997 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.151515 B =14020.633790 C =14168.734397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.361 6.361 6 C 0.680 3.320 7 O -0.571 6.571 8 N -0.638 5.638 9 C 0.108 3.892 10 C -0.120 4.120 11 C -0.100 4.100 12 C 0.023 3.977 13 N -0.487 5.487 14 C 0.005 3.995 15 C 0.040 3.960 16 C -0.516 4.516 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.005 4.005 25 C 0.133 3.867 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.262 0.738 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.091 0.909 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.842 17.993 -16.282 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.276 6.276 6 C 0.436 3.564 7 O -0.460 6.460 8 N -0.380 5.380 9 C -0.014 4.014 10 C -0.140 4.140 11 C -0.138 4.138 12 C -0.106 4.106 13 N -0.209 5.209 14 C -0.123 4.123 15 C 0.021 3.979 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.137 4.137 19 N -0.523 5.523 20 Si 0.718 3.282 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.134 4.134 25 C 0.011 3.989 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.109 0.891 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.760 18.306 -16.367 26.071 hybrid contribution 1.118 -1.082 -0.833 1.765 sum -7.642 17.224 -17.200 25.512 Atomic orbital electron populations 1.22514 0.94025 1.05037 1.02451 1.22086 0.94377 0.91552 0.82184 1.21855 1.02305 0.92462 1.03101 1.22519 1.01603 1.03504 0.96433 1.86319 1.71718 1.23339 1.46258 1.17293 0.77902 0.80102 0.81065 1.90895 1.41460 1.70489 1.43193 1.48219 1.54029 1.15362 1.20355 1.23172 0.93938 0.97645 0.86673 1.22997 0.97601 0.95232 0.98159 1.21387 0.98251 1.01817 0.92367 1.22560 0.95653 1.00080 0.92313 1.68874 1.21202 1.12893 1.17931 1.24007 1.01428 0.86084 1.00831 1.20103 0.93122 0.89795 0.94912 1.21036 1.02251 0.94400 1.37760 0.92498 1.25018 0.95362 0.98674 0.94600 1.69965 1.23473 1.20922 1.37985 0.86621 0.81704 0.81253 0.78577 1.20573 1.21198 1.19909 1.23991 0.89628 1.00720 0.99063 1.23108 0.98002 0.81586 0.96155 0.92182 0.91118 0.89440 0.91438 0.90111 0.91460 0.89406 0.91135 0.92150 0.90197 0.89190 0.87601 0.90722 0.90810 0.94572 0.91786 0.91876 0.92927 0.91842 0.92869 0.92875 0.92116 0.89120 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.37 37.16 0.31 -1.36 16 2 C 0.13 1.29 1.13 -90.62 -0.10 1.18 16 3 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16 4 C -0.18 -1.70 8.37 37.15 0.31 -1.39 16 5 O -0.36 -4.37 9.91 -40.32 -0.40 -4.77 16 6 C 0.68 9.15 8.26 54.06 0.45 9.60 16 7 O -0.57 -8.74 12.66 -19.28 -0.24 -8.98 16 8 N -0.64 -7.52 3.69 -191.24 -0.71 -8.22 16 9 C 0.11 1.04 8.21 -8.64 -0.07 0.97 16 10 C -0.12 -1.19 3.99 -90.24 -0.36 -1.54 16 11 C -0.10 -1.19 5.23 -26.73 -0.14 -1.33 16 12 C 0.02 0.34 4.81 -3.83 -0.02 0.32 16 13 N -0.49 -9.20 6.41 -244.62 -1.57 -10.77 16 14 C 0.01 0.12 6.57 -7.53 -0.05 0.07 16 15 C 0.04 0.97 3.77 -91.24 -0.34 0.63 16 16 C -0.52 -13.78 8.82 -34.44 -0.30 -14.08 16 17 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -25.16 13.26 55.43 0.74 -24.43 16 20 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.01 -0.11 7.28 -7.54 -0.05 -0.16 16 25 C 0.13 1.35 8.20 -8.50 -0.07 1.28 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 1.02 5.88 -51.93 -0.31 0.71 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 1.03 5.88 -51.93 -0.31 0.73 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.79 7.88 -51.93 -0.41 0.38 16 37 H 0.11 1.06 8.12 -51.92 -0.42 0.63 16 38 H 0.07 0.87 7.81 -51.93 -0.41 0.46 16 39 H 0.07 0.96 7.67 -51.93 -0.40 0.56 16 40 H 0.04 0.56 7.56 -51.93 -0.39 0.16 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.05 1.15 7.66 -51.93 -0.40 0.75 16 44 H 0.06 1.71 8.11 -51.93 -0.42 1.29 16 45 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.05 1.06 7.73 -51.92 -0.40 0.66 16 47 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -30.22 390.35 -10.43 -40.65 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.90 Total: -0.37 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.21 Total: -4.74 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: -1.54 Total: -43.41 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.64 Total: -13.75 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.22 -10.43 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207761484.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.005 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds