Wall clock time and date at job start Tue Mar 31 2020 09:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52994 * 109.47286 * 239.99698 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.47062 * 136.06058 * 359.36332 * 8 6 5 10 10 C 1.53238 * 88.08170 * 207.19683 * 9 8 6 11 11 C 1.52999 * 114.32610 * 220.46164 * 10 9 8 12 12 C 1.52995 * 109.47732 * 268.75929 * 11 10 9 13 13 N 1.46899 * 109.47447 * 179.97438 * 12 11 10 14 14 C 1.47481 * 110.99777 * 74.02877 * 13 12 11 15 15 C 1.53522 * 87.92936 * 138.70463 * 14 13 12 16 16 C 1.50693 * 114.17085 * 220.32808 * 15 14 13 17 17 H 1.08001 * 119.99808 * 93.83881 * 16 15 14 18 18 C 1.37875 * 120.00570 * 273.84501 * 16 15 14 19 19 N 1.31515 * 119.99668 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00513 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47242 * 89.99795 * 20 18 16 22 22 H 1.48502 * 109.47153 * 209.99774 * 20 18 16 23 23 H 1.48496 * 109.46994 * 330.00031 * 20 18 16 24 24 C 1.47477 * 111.00414 * 170.00538 * 13 12 11 25 25 C 1.47070 * 136.05208 * 179.72516 * 8 6 5 26 26 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 27 27 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 28 28 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 31 31 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 32 32 H 1.08995 * 109.47307 * 299.99583 * 4 2 1 33 33 H 1.08999 * 109.47211 * 60.00515 * 4 2 1 34 34 H 1.09010 * 109.46887 * 180.02562 * 4 2 1 35 35 H 1.09003 * 113.46647 * 321.92586 * 9 8 6 36 36 H 1.09001 * 113.47023 * 92.37230 * 9 8 6 37 37 H 1.09007 * 114.01505 * 87.71657 * 10 9 8 38 38 H 1.09000 * 109.46935 * 28.76855 * 11 10 9 39 39 H 1.09007 * 109.46548 * 148.75997 * 11 10 9 40 40 H 1.08990 * 109.47532 * 300.00394 * 12 11 10 41 41 H 1.09001 * 109.46712 * 60.00123 * 12 11 10 42 42 H 1.08998 * 113.47803 * 253.46814 * 14 13 12 43 43 H 1.08997 * 113.47237 * 23.94458 * 14 13 12 44 44 H 1.08999 * 114.33851 * 87.63417 * 15 14 13 45 45 H 0.97001 * 120.00280 * 179.97438 * 19 18 16 46 46 H 1.09007 * 113.47263 * 336.06590 * 24 13 12 47 47 H 1.08994 * 113.48288 * 106.52823 * 24 13 12 48 48 H 1.09000 * 113.46729 * 267.62123 * 25 8 6 49 49 H 1.08999 * 113.47113 * 38.06704 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 2.8912 -2.3856 3.6029 10 6 3.2340 -3.8784 3.6500 11 6 3.2660 -4.4735 5.0592 12 6 4.6850 -4.3748 5.6225 13 7 4.7156 -4.9456 6.9757 14 6 4.6410 -6.4178 6.9301 15 6 5.7022 -6.4504 8.0390 16 6 6.7444 -7.5247 7.8644 17 1 7.6751 -7.2981 7.3656 18 6 6.5098 -8.7969 8.3412 19 7 5.3766 -9.0728 8.9489 20 14 7.8014 -10.1288 8.1241 21 1 8.7158 -10.1271 9.2941 22 1 7.1353 -11.4518 8.0184 23 1 8.5800 -9.8663 6.8871 24 6 6.1018 -5.0865 7.4589 25 6 1.8854 -4.0306 2.9329 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6768 -1.7489 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2488 35 1 3.7515 -1.7507 3.3909 36 1 2.3170 -2.0447 4.4644 37 1 4.0965 -4.1550 3.0435 38 1 2.5805 -3.9216 5.7023 39 1 2.9632 -5.5199 5.0186 40 1 5.3705 -4.9266 4.9795 41 1 4.9878 -3.3285 5.6631 42 1 3.6745 -6.8135 7.2422 43 1 4.9859 -6.8410 5.9867 44 1 5.2971 -6.4039 9.0499 45 1 5.2113 -9.9679 9.2841 46 1 6.8365 -5.1544 6.6564 47 1 6.3734 -4.3540 8.2189 48 1 1.0407 -4.1322 3.6143 49 1 1.8921 -4.7915 2.1525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207761484.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:47 Heat of formation + Delta-G solvation = -33.819043 kcal Electronic energy + Delta-G solvation = -25600.594942 eV Core-core repulsion = 21950.385991 eV Total energy + Delta-G solvation = -3650.208951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99659 -40.83574 -40.25691 -37.71290 -35.20773 -34.90883 -33.77644 -30.75066 -28.50252 -28.39439 -28.32087 -27.08324 -26.56642 -25.99418 -23.50878 -22.27768 -21.28067 -20.43205 -20.23927 -18.82502 -18.60785 -17.75478 -17.43989 -16.71578 -16.54275 -16.36081 -16.06745 -15.77858 -15.46673 -15.23651 -14.91152 -14.61227 -14.22069 -13.99087 -13.66247 -13.52626 -13.36495 -13.17598 -13.11400 -12.97445 -12.89827 -12.89534 -12.88252 -12.62995 -12.49772 -12.37522 -12.15361 -12.12554 -11.99816 -11.46624 -11.43184 -11.26161 -11.12327 -11.00041 -10.75448 -10.46485 -9.89548 -9.60839 -8.12994 -6.23669 0.92491 1.43802 1.44755 1.54626 1.69083 2.43994 2.75447 3.16577 3.20102 3.41944 3.72324 3.77085 3.88458 3.92163 3.96282 4.16116 4.23354 4.29316 4.42601 4.46078 4.52695 4.55945 4.58448 4.58869 4.62481 4.65675 4.73525 4.77575 4.80020 4.81792 4.85238 4.90498 4.93542 5.04075 5.09283 5.10561 5.21259 5.24929 5.30167 5.30957 5.42407 5.44705 5.61553 5.66266 5.89440 6.33612 6.49215 6.59498 6.85912 7.18179 7.44557 8.96603 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.033122 B = 0.001997 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.151515 B =14020.633790 C =14168.734397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.121 3.879 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.367 6.367 6 C 0.672 3.328 7 O -0.597 6.597 8 N -0.645 5.645 9 C 0.112 3.888 10 C -0.105 4.105 11 C -0.089 4.089 12 C 0.021 3.979 13 N -0.483 5.483 14 C 0.020 3.980 15 C 0.015 3.985 16 C -0.529 4.529 17 H 0.058 0.942 18 C 0.014 3.986 19 N -0.922 5.922 20 Si 0.956 3.044 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.266 1.266 24 C 0.009 3.991 25 C 0.129 3.871 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.103 0.897 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.150 19.661 -17.451 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.085 3.915 3 C -0.191 4.191 4 C -0.236 4.236 5 O -0.282 6.282 6 C 0.429 3.571 7 O -0.489 6.489 8 N -0.387 5.387 9 C -0.010 4.010 10 C -0.124 4.124 11 C -0.128 4.128 12 C -0.107 4.107 13 N -0.205 5.205 14 C -0.109 4.109 15 C -0.004 4.004 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.186 4.186 19 N -0.560 5.560 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.120 4.120 25 C 0.008 3.992 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.121 0.879 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.051 19.996 -17.530 27.785 hybrid contribution 0.883 -1.538 -0.472 1.836 sum -7.167 18.458 -18.003 26.761 Atomic orbital electron populations 1.22464 0.93933 1.03480 1.03693 1.22480 0.94695 0.92823 0.81467 1.21880 1.02398 0.90442 1.04413 1.22470 1.01573 1.02082 0.97493 1.86326 1.71774 1.22656 1.47451 1.17518 0.77852 0.80533 0.81219 1.90881 1.42691 1.71130 1.44235 1.48387 1.53937 1.15880 1.20455 1.23287 0.94106 0.97348 0.86240 1.22781 0.97494 0.95443 0.96731 1.21259 0.96555 1.01457 0.93489 1.22674 0.97415 1.00824 0.89819 1.68799 1.20161 1.10717 1.20853 1.23693 0.99507 0.88239 0.99451 1.20087 0.94123 0.92112 0.94080 1.21383 1.02710 0.95226 1.37372 0.92374 1.25816 0.97285 1.00984 0.94479 1.70088 1.25329 1.21395 1.39218 0.85592 0.79183 0.78318 0.78782 1.20099 1.21073 1.19009 1.23813 0.90569 0.98369 0.99231 1.23222 0.98620 0.81083 0.96237 0.91992 0.88803 0.92297 0.91290 0.87707 0.91229 0.92279 0.88812 0.92072 0.89306 0.87849 0.87404 0.90008 0.91999 0.94818 0.89546 0.93464 0.93187 0.95310 0.92911 0.92120 0.90973 0.87947 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 8.37 71.98 0.60 -2.50 16 2 C 0.12 2.17 1.13 -10.79 -0.01 2.15 16 3 C -0.13 -1.49 8.85 71.98 0.64 -0.86 16 4 C -0.18 -3.16 8.37 71.98 0.60 -2.55 16 5 O -0.37 -8.58 9.91 -55.47 -0.55 -9.13 16 6 C 0.67 17.90 8.26 129.79 1.07 18.97 16 7 O -0.60 -18.67 12.66 19.80 0.25 -18.42 16 8 N -0.64 -14.48 3.69 -989.37 -3.65 -18.14 16 9 C 0.11 1.89 8.21 83.10 0.68 2.58 16 10 C -0.10 -1.86 3.99 -10.55 -0.04 -1.90 16 11 C -0.09 -1.95 5.23 30.59 0.16 -1.79 16 12 C 0.02 0.58 4.81 86.30 0.42 0.99 16 13 N -0.48 -17.66 6.41 -927.83 -5.95 -23.61 16 14 C 0.02 0.89 6.57 83.58 0.55 1.44 16 15 C 0.02 0.75 3.77 -11.19 -0.04 0.70 16 16 C -0.53 -28.39 8.82 25.60 0.23 -28.17 16 17 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 18 C 0.01 0.74 5.46 84.65 0.46 1.21 16 19 N -0.92 -53.39 13.26 21.45 0.28 -53.11 16 20 Si 0.96 42.67 29.54 68.60 2.03 44.69 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 C 0.01 0.36 7.28 83.58 0.61 0.96 16 25 C 0.13 2.48 8.20 83.18 0.68 3.16 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.10 1.51 7.88 -2.39 -0.02 1.49 16 37 H 0.11 1.93 8.12 -2.38 -0.02 1.91 16 38 H 0.08 1.70 7.81 -2.39 -0.02 1.68 16 39 H 0.06 1.53 7.67 -2.38 -0.02 1.51 16 40 H 0.03 0.96 7.56 -2.39 -0.02 0.94 16 41 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.05 2.19 7.66 -2.39 -0.02 2.17 16 44 H 0.03 1.61 8.11 -2.39 -0.02 1.59 16 45 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.06 2.31 7.73 -2.38 -0.02 2.29 16 47 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 48 H 0.10 1.73 8.10 -2.39 -0.02 1.71 16 49 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -66.27 390.35 -0.09 -66.36 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.90 Total: 16.94 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 6.60 Total: -5.60 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -9.32 Total: -94.85 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.30 Total: -27.55 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -66.27 -0.09 -66.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207761484.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.540 kcal (2) G-P(sol) polarization free energy of solvation -66.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds