Wall clock time and date at job start Tue Mar 31 2020 11:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46746 * 2 1 4 4 H 1.08999 * 109.47132 * 55.00410 * 3 2 1 5 5 C 1.52998 * 109.47248 * 294.99661 * 3 2 1 6 6 C 1.53010 * 109.47021 * 174.99864 * 3 2 1 7 7 C 1.53002 * 109.46923 * 184.99995 * 6 3 2 8 8 C 1.50697 * 109.46689 * 179.97438 * 7 6 3 9 9 O 1.21284 * 120.00422 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99884 * 179.97438 * 8 7 6 11 11 C 1.44963 * 117.31994 * 356.65522 * 10 8 7 12 12 C 1.51974 * 111.81771 * 203.69711 * 11 10 8 13 13 O 1.39843 * 112.48610 * 320.93435 * 12 11 10 14 14 C 1.40790 * 119.43428 * 54.52832 * 13 12 11 15 15 H 1.08996 * 109.35126 * 189.97730 * 14 13 12 16 16 C 1.51584 * 109.26428 * 70.31585 * 14 13 12 17 17 N 1.46871 * 106.20437 * 210.26519 * 16 14 13 18 18 C 1.36942 * 125.36522 * 197.66776 * 17 16 14 19 19 H 1.08002 * 119.99985 * 169.28457 * 18 17 16 20 20 C 1.38808 * 120.00069 * 349.27892 * 18 17 16 21 21 N 1.31621 * 120.00128 * 350.24609 * 20 18 17 22 22 Si 1.86799 * 120.00207 * 170.24027 * 20 18 17 23 23 H 1.48507 * 109.46903 * 84.93106 * 22 20 18 24 24 H 1.48498 * 109.47084 * 204.93100 * 22 20 18 25 25 H 1.48503 * 109.46942 * 324.93557 * 22 20 18 26 26 C 1.46784 * 109.26929 * 17.64377 * 17 16 14 27 27 C 1.44541 * 117.32198 * 176.62848 * 10 8 7 28 28 H 1.08994 * 109.48536 * 285.90338 * 27 10 8 29 29 H 1.09002 * 109.47124 * 60.00159 * 1 2 3 30 30 H 1.09003 * 109.46886 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47860 * 299.99844 * 1 2 3 32 32 H 1.08993 * 109.47570 * 239.99987 * 2 1 3 33 33 H 1.09002 * 109.47124 * 119.99840 * 2 1 3 34 34 H 1.08996 * 109.47374 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47162 * 300.00530 * 5 3 2 36 36 H 1.09003 * 109.46662 * 60.00145 * 5 3 2 37 37 H 1.08998 * 109.46845 * 64.99823 * 6 3 2 38 38 H 1.08999 * 109.47154 * 304.99937 * 6 3 2 39 39 H 1.08993 * 109.47191 * 59.99898 * 7 6 3 40 40 H 1.08999 * 109.47158 * 299.99939 * 7 6 3 41 41 H 1.09001 * 109.00139 * 324.27622 * 11 10 8 42 42 H 1.08995 * 108.99760 * 83.11838 * 11 10 8 43 43 H 1.09003 * 109.06832 * 79.81545 * 12 11 10 44 44 H 1.09002 * 109.06483 * 198.75866 * 12 11 10 45 45 H 1.08998 * 110.32937 * 91.00167 * 16 14 13 46 46 H 1.09006 * 110.00137 * 329.34779 * 16 14 13 47 47 H 0.96999 * 120.00446 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.83052 * 239.35475 * 26 17 16 49 49 H 1.09001 * 109.90196 * 118.44047 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5648 1.4445 0.1258 7 6 4.0643 2.8852 0.2512 8 6 5.5661 2.8870 0.3757 9 8 6.1769 1.8392 0.3647 10 7 6.2308 4.0531 0.4982 11 6 5.4516 5.2735 0.4288 12 6 6.2991 6.4614 0.0041 13 8 7.5757 6.4387 0.5745 14 6 8.3864 5.2993 0.4111 15 1 9.2590 5.3810 1.0591 16 6 8.8394 5.2107 -1.0327 17 7 9.0023 3.7804 -1.3241 18 6 9.7103 3.2612 -2.3751 19 1 9.9206 2.2026 -2.4141 20 6 10.1576 4.0955 -3.3903 21 7 9.7433 5.3436 -3.4470 22 14 11.3476 3.4472 -4.6759 23 1 10.5874 2.7716 -5.7580 24 1 12.1232 4.5774 -5.2471 25 1 12.2781 2.4772 -4.0446 26 6 8.2871 2.9951 -0.3110 27 6 7.6620 3.9842 0.6887 28 1 7.8781 3.6579 1.7059 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9988 3.1541 -1.3076 35 1 2.0698 1.5875 -2.1492 36 1 0.5488 2.1252 -1.3969 37 1 4.0029 0.9837 -0.7596 38 1 3.8570 0.8802 1.0114 39 1 3.6262 3.3459 1.1364 40 1 3.7721 3.4495 -0.6344 41 1 4.6440 5.1385 -0.2907 42 1 5.0222 5.4766 1.4098 43 1 6.4278 6.4383 -1.0781 44 1 5.7856 7.3822 0.2809 45 1 9.7887 5.7298 -1.1644 46 1 8.0826 5.6421 -1.6881 47 1 10.0555 5.9265 -4.1566 48 1 8.9847 2.3371 0.2072 49 1 7.5038 2.4035 -0.7849 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218832892.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:13 Heat of formation + Delta-G solvation = -53.303212 kcal Electronic energy + Delta-G solvation = -27517.816625 eV Core-core repulsion = 23866.762777 eV Total energy + Delta-G solvation = -3651.053848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.85069 -38.69773 -37.20498 -35.96477 -34.82363 -32.71694 -32.02838 -30.00183 -29.10884 -27.95545 -27.42957 -25.82767 -24.52808 -23.36321 -22.65877 -20.80115 -19.97569 -19.74635 -18.38580 -17.46892 -16.91748 -16.51455 -15.98088 -15.33664 -15.24931 -15.07432 -14.68447 -14.59515 -14.11221 -13.89924 -13.73702 -13.56274 -13.28386 -12.80454 -12.75681 -12.36883 -12.17933 -12.09620 -12.00159 -11.79154 -11.74163 -11.36112 -11.06996 -11.00695 -10.85889 -10.69338 -10.66146 -10.64012 -10.54202 -10.53467 -10.31134 -10.11665 -9.70909 -9.30084 -8.91352 -8.56154 -8.20287 -6.73182 -5.71825 -3.04538 2.85273 3.11420 3.42157 3.47187 3.49809 4.05879 4.44466 4.53663 4.62680 4.71732 4.86129 4.87178 5.01407 5.11382 5.16491 5.20396 5.27363 5.35894 5.38274 5.39515 5.42443 5.52097 5.57941 5.62907 5.71065 5.75448 5.78124 5.85459 5.86303 5.90430 5.95023 5.96257 5.98291 6.11906 6.13004 6.27789 6.29451 6.36207 6.61937 6.86468 7.21112 7.40034 7.49397 7.54260 7.77198 7.92383 8.27410 8.45289 9.22555 9.84378 10.49285 11.41025 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.003811 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.641070 B = 7345.054630 C = 8412.355426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.092 4.092 4 H 0.068 0.932 5 C -0.152 4.152 6 C -0.100 4.100 7 C -0.139 4.139 8 C 0.504 3.496 9 O -0.525 6.525 10 N -0.591 5.591 11 C 0.078 3.922 12 C 0.060 3.940 13 O -0.374 6.374 14 C 0.074 3.926 15 H 0.111 0.889 16 C 0.150 3.850 17 N -0.602 5.602 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.122 3.878 27 C 0.113 3.887 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.252 0.748 48 H 0.031 0.969 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.453 -1.480 9.574 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.111 4.111 4 H 0.087 0.913 5 C -0.209 4.209 6 C -0.138 4.138 7 C -0.179 4.179 8 C 0.292 3.708 9 O -0.402 6.402 10 N -0.325 5.325 11 C -0.046 4.046 12 C -0.017 4.017 13 O -0.291 6.291 14 C 0.016 3.984 15 H 0.129 0.871 16 C 0.024 3.976 17 N -0.330 5.330 18 C -0.354 4.354 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.207 1.207 26 C -0.003 4.003 27 C 0.009 3.991 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.122 0.878 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.049 0.951 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.932 -1.762 9.492 19.491 hybrid contribution 0.479 -0.340 -0.946 1.113 sum -16.453 -2.102 8.546 18.659 Atomic orbital electron populations 1.21824 0.96095 1.01370 1.01761 1.21565 0.95600 0.96418 1.02211 1.21193 0.95343 0.96191 0.98324 0.91326 1.21959 1.01045 1.00601 0.97344 1.21408 0.93977 0.94821 1.03546 1.21793 0.92266 1.00069 1.03794 1.20757 0.90143 0.83447 0.76415 1.90672 1.69292 1.31512 1.48693 1.46731 1.07088 1.06083 1.72641 1.21661 0.94970 0.86176 1.01761 1.21973 0.83885 0.96924 0.98956 1.86419 1.26146 1.39352 1.77212 1.22535 0.91826 0.82736 1.01332 0.87139 1.21220 1.00816 0.86804 0.88726 1.44279 1.59412 1.00710 1.28581 1.19003 1.25748 0.93327 0.97358 0.90564 1.24824 1.01140 0.96379 0.98067 1.69961 1.46632 1.05766 1.34341 0.86160 0.80820 0.77532 0.81390 1.21542 1.21617 1.20682 1.21812 0.95138 0.93127 0.90234 1.21531 0.79530 0.98482 0.99599 0.91126 0.92531 0.93024 0.92921 0.91876 0.91994 0.92552 0.92517 0.92657 0.91011 0.91268 0.89274 0.88902 0.90009 0.91807 0.92665 0.87819 0.91872 0.94243 0.93769 0.95087 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.15 0.36 -0.75 16 2 C -0.12 -1.02 5.40 -26.73 -0.14 -1.16 16 3 C -0.09 -0.81 2.39 -90.61 -0.22 -1.03 16 4 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 5 C -0.15 -1.30 8.70 37.16 0.32 -0.98 16 6 C -0.10 -1.13 3.97 -26.72 -0.11 -1.23 16 7 C -0.14 -1.60 4.03 -27.88 -0.11 -1.71 16 8 C 0.50 8.25 7.05 -10.98 -0.08 8.17 16 9 O -0.53 -10.47 13.00 5.55 0.07 -10.40 16 10 N -0.59 -9.77 3.09 -169.01 -0.52 -10.29 16 11 C 0.08 1.00 5.89 -5.39 -0.03 0.96 16 12 C 0.06 0.87 6.74 36.64 0.25 1.12 16 13 O -0.37 -6.65 10.09 -31.81 -0.32 -6.97 16 14 C 0.07 1.46 3.81 -27.61 -0.11 1.36 16 15 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 16 C 0.15 3.70 4.89 -4.56 -0.02 3.67 16 17 N -0.60 -16.06 3.39 -173.01 -0.59 -16.64 16 18 C -0.23 -6.55 10.21 -15.06 -0.15 -6.71 16 19 H 0.08 2.17 7.85 -52.49 -0.41 1.76 16 20 C -0.01 -0.22 5.40 -17.43 -0.09 -0.32 16 21 N -0.92 -27.41 10.67 55.49 0.59 -26.81 16 22 Si 0.91 22.60 29.56 -169.99 -5.03 17.57 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.12 2.84 6.05 -3.42 -0.02 2.82 16 27 C 0.11 2.16 3.41 -68.67 -0.23 1.93 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 0.40 6.56 -51.93 -0.34 0.05 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.41 6.56 -51.93 -0.34 0.07 16 37 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.09 0.97 5.54 -51.93 -0.29 0.69 16 41 H 0.08 0.87 6.33 -51.93 -0.33 0.54 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.93 6.72 -51.93 -0.35 0.58 16 44 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.06 1.73 7.34 -51.93 -0.38 1.34 16 46 H 0.04 1.07 6.08 -51.93 -0.32 0.75 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.06 1.58 5.19 -51.93 -0.27 1.31 16 LS Contribution 365.63 15.07 5.51 5.51 Total: -1.00 -33.19 365.63 -9.08 -42.27 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.41 Total: -0.38 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -0.39 Total: 6.15 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.52 Total: -53.75 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.25 Total: -17.37 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.19 -9.08 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218832892.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.035 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds