Wall clock time and date at job start Tue Mar 31 2020 11:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46746 * 2 1 4 4 H 1.08999 * 109.47132 * 55.00410 * 3 2 1 5 5 C 1.52998 * 109.47248 * 294.99661 * 3 2 1 6 6 C 1.53010 * 109.47021 * 174.99864 * 3 2 1 7 7 C 1.53002 * 109.46923 * 184.99995 * 6 3 2 8 8 C 1.50697 * 109.46689 * 179.97438 * 7 6 3 9 9 O 1.21284 * 120.00422 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99884 * 179.97438 * 8 7 6 11 11 C 1.44963 * 117.31994 * 356.65522 * 10 8 7 12 12 C 1.51974 * 111.81771 * 203.69711 * 11 10 8 13 13 O 1.39843 * 112.48610 * 320.93435 * 12 11 10 14 14 C 1.40790 * 119.43428 * 54.52832 * 13 12 11 15 15 H 1.08996 * 109.35126 * 189.97730 * 14 13 12 16 16 C 1.51584 * 109.26428 * 70.31585 * 14 13 12 17 17 N 1.46871 * 106.20437 * 210.26519 * 16 14 13 18 18 C 1.36942 * 125.36522 * 197.66776 * 17 16 14 19 19 H 1.08002 * 119.99985 * 169.28457 * 18 17 16 20 20 C 1.38808 * 120.00069 * 349.27892 * 18 17 16 21 21 N 1.31621 * 120.00128 * 350.24609 * 20 18 17 22 22 Si 1.86799 * 120.00207 * 170.24027 * 20 18 17 23 23 H 1.48507 * 109.46903 * 84.93106 * 22 20 18 24 24 H 1.48498 * 109.47084 * 204.93100 * 22 20 18 25 25 H 1.48503 * 109.46942 * 324.93557 * 22 20 18 26 26 C 1.46784 * 109.26929 * 17.64377 * 17 16 14 27 27 C 1.44541 * 117.32198 * 176.62848 * 10 8 7 28 28 H 1.08994 * 109.48536 * 285.90338 * 27 10 8 29 29 H 1.09002 * 109.47124 * 60.00159 * 1 2 3 30 30 H 1.09003 * 109.46886 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47860 * 299.99844 * 1 2 3 32 32 H 1.08993 * 109.47570 * 239.99987 * 2 1 3 33 33 H 1.09002 * 109.47124 * 119.99840 * 2 1 3 34 34 H 1.08996 * 109.47374 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47162 * 300.00530 * 5 3 2 36 36 H 1.09003 * 109.46662 * 60.00145 * 5 3 2 37 37 H 1.08998 * 109.46845 * 64.99823 * 6 3 2 38 38 H 1.08999 * 109.47154 * 304.99937 * 6 3 2 39 39 H 1.08993 * 109.47191 * 59.99898 * 7 6 3 40 40 H 1.08999 * 109.47158 * 299.99939 * 7 6 3 41 41 H 1.09001 * 109.00139 * 324.27622 * 11 10 8 42 42 H 1.08995 * 108.99760 * 83.11838 * 11 10 8 43 43 H 1.09003 * 109.06832 * 79.81545 * 12 11 10 44 44 H 1.09002 * 109.06483 * 198.75866 * 12 11 10 45 45 H 1.08998 * 110.32937 * 91.00167 * 16 14 13 46 46 H 1.09006 * 110.00137 * 329.34779 * 16 14 13 47 47 H 0.96999 * 120.00446 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.83052 * 239.35475 * 26 17 16 49 49 H 1.09001 * 109.90196 * 118.44047 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5648 1.4445 0.1258 7 6 4.0643 2.8852 0.2512 8 6 5.5661 2.8870 0.3757 9 8 6.1769 1.8392 0.3647 10 7 6.2308 4.0531 0.4982 11 6 5.4516 5.2735 0.4288 12 6 6.2991 6.4614 0.0041 13 8 7.5757 6.4387 0.5745 14 6 8.3864 5.2993 0.4111 15 1 9.2590 5.3810 1.0591 16 6 8.8394 5.2107 -1.0327 17 7 9.0023 3.7804 -1.3241 18 6 9.7103 3.2612 -2.3751 19 1 9.9206 2.2026 -2.4141 20 6 10.1576 4.0955 -3.3903 21 7 9.7433 5.3436 -3.4470 22 14 11.3476 3.4472 -4.6759 23 1 10.5874 2.7716 -5.7580 24 1 12.1232 4.5774 -5.2471 25 1 12.2781 2.4772 -4.0446 26 6 8.2871 2.9951 -0.3110 27 6 7.6620 3.9842 0.6887 28 1 7.8781 3.6579 1.7059 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9988 3.1541 -1.3076 35 1 2.0698 1.5875 -2.1492 36 1 0.5488 2.1252 -1.3969 37 1 4.0029 0.9837 -0.7596 38 1 3.8570 0.8802 1.0114 39 1 3.6262 3.3459 1.1364 40 1 3.7721 3.4495 -0.6344 41 1 4.6440 5.1385 -0.2907 42 1 5.0222 5.4766 1.4098 43 1 6.4278 6.4383 -1.0781 44 1 5.7856 7.3822 0.2809 45 1 9.7887 5.7298 -1.1644 46 1 8.0826 5.6421 -1.6881 47 1 10.0555 5.9265 -4.1566 48 1 8.9847 2.3371 0.2072 49 1 7.5038 2.4035 -0.7849 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218832892.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:12 Heat of formation + Delta-G solvation = -74.696670 kcal Electronic energy + Delta-G solvation = -27518.744315 eV Core-core repulsion = 23866.762777 eV Total energy + Delta-G solvation = -3651.981538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.24383 -40.03620 -38.07574 -37.67746 -36.16360 -34.46514 -33.13767 -31.70147 -30.01323 -29.61913 -28.83545 -26.94879 -26.22102 -24.71316 -23.69638 -22.43083 -21.22827 -20.72671 -19.79044 -19.15083 -18.30262 -18.17952 -17.17198 -16.87558 -16.51168 -16.31895 -16.02389 -15.78117 -15.65182 -15.09702 -15.05635 -14.66692 -14.42139 -14.23650 -13.98445 -13.91488 -13.59431 -13.33695 -13.06143 -12.88897 -12.81262 -12.76976 -12.58026 -12.44963 -12.38016 -12.19503 -12.16017 -11.92749 -11.82009 -11.60975 -11.43817 -11.35575 -11.26263 -10.79773 -10.73786 -10.37005 -9.55461 -8.89285 -7.94086 -5.30471 1.41306 1.43694 1.53052 1.60870 1.86437 2.44335 2.71928 3.24045 3.31809 3.59252 3.71241 3.77612 3.82635 3.96259 3.96757 4.06678 4.18364 4.20353 4.33469 4.38090 4.42829 4.44102 4.49480 4.59668 4.64369 4.74044 4.75431 4.80905 4.88102 4.91683 5.00684 5.06851 5.11636 5.13645 5.21339 5.25220 5.27626 5.32254 5.36240 5.44366 5.57163 5.59642 5.60272 5.64351 6.12227 6.28902 6.49475 7.01773 7.19077 7.68683 8.32157 9.16820 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.003811 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.641070 B = 7345.054630 C = 8412.355426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.083 4.083 4 H 0.088 0.912 5 C -0.153 4.153 6 C -0.096 4.096 7 C -0.128 4.128 8 C 0.494 3.506 9 O -0.571 6.571 10 N -0.598 5.598 11 C 0.073 3.927 12 C 0.052 3.948 13 O -0.376 6.376 14 C 0.091 3.909 15 H 0.124 0.876 16 C 0.163 3.837 17 N -0.620 5.620 18 C -0.252 4.252 19 H 0.071 0.929 20 C -0.058 4.058 21 N -0.944 5.944 22 Si 0.980 3.020 23 H -0.283 1.283 24 H -0.287 1.287 25 H -0.272 1.272 26 C 0.123 3.877 27 C 0.125 3.875 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.021 0.979 44 H 0.150 0.850 45 H 0.027 0.973 46 H 0.011 0.989 47 H 0.250 0.750 48 H 0.022 0.978 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.738 -0.568 10.850 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.102 4.102 4 H 0.107 0.893 5 C -0.210 4.210 6 C -0.134 4.134 7 C -0.167 4.167 8 C 0.285 3.715 9 O -0.451 6.451 10 N -0.332 5.332 11 C -0.049 4.049 12 C -0.025 4.025 13 O -0.293 6.293 14 C 0.031 3.969 15 H 0.141 0.859 16 C 0.037 3.963 17 N -0.348 5.348 18 C -0.381 4.381 19 H 0.089 0.911 20 C -0.251 4.251 21 N -0.592 5.592 22 Si 0.807 3.193 23 H -0.210 1.210 24 H -0.213 1.213 25 H -0.197 1.197 26 C -0.002 4.002 27 C 0.019 3.981 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.145 0.855 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.040 0.960 44 H 0.168 0.832 45 H 0.045 0.955 46 H 0.029 0.971 47 H 0.059 0.941 48 H 0.040 0.960 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.255 -0.834 10.785 22.085 hybrid contribution 1.157 -0.632 -1.378 1.907 sum -18.098 -1.466 9.407 20.449 Atomic orbital electron populations 1.21798 0.94765 1.01811 1.02342 1.21580 0.96746 0.96251 1.01505 1.21142 0.93182 0.96596 0.99254 0.89337 1.21973 1.01910 1.00642 0.96486 1.21359 0.95812 0.94645 1.01607 1.21842 0.88294 1.00439 1.06112 1.21701 0.92142 0.82607 0.75070 1.90651 1.70624 1.33139 1.50672 1.46925 1.06021 1.07790 1.72449 1.22004 0.94530 0.83541 1.04813 1.22349 0.83057 1.00108 0.96995 1.86429 1.27627 1.38205 1.77020 1.22216 0.92960 0.83970 0.97728 0.85890 1.20988 0.98173 0.85303 0.91815 1.44554 1.59569 1.02003 1.28689 1.19312 1.26688 0.93482 0.98600 0.91066 1.25675 1.02677 0.96670 1.00126 1.70156 1.47418 1.06760 1.34852 0.85099 0.78558 0.77057 0.78592 1.20984 1.21297 1.19720 1.21826 0.94281 0.93792 0.90296 1.21249 0.81407 0.96521 0.98892 0.89392 0.92200 0.92769 0.92000 0.93160 0.92282 0.91821 0.94105 0.91256 0.94056 0.92368 0.85483 0.87381 0.87462 0.87684 0.96041 0.83212 0.95473 0.97141 0.94081 0.95957 0.93866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 71.98 0.70 -1.15 16 2 C -0.12 -1.94 5.40 30.59 0.17 -1.78 16 3 C -0.08 -1.29 2.39 -10.79 -0.03 -1.31 16 4 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.15 -2.27 8.70 71.98 0.63 -1.64 16 6 C -0.10 -2.08 3.97 30.60 0.12 -1.96 16 7 C -0.13 -2.57 4.03 29.85 0.12 -2.45 16 8 C 0.49 15.63 7.05 87.65 0.62 16.25 16 9 O -0.57 -23.25 13.00 -3.04 -0.04 -23.29 16 10 N -0.60 -18.73 3.09 -807.00 -2.49 -21.22 16 11 C 0.07 1.59 5.89 86.33 0.51 2.10 16 12 C 0.05 1.36 6.74 71.64 0.48 1.84 16 13 O -0.38 -12.76 10.09 -136.74 -1.38 -14.14 16 14 C 0.09 3.55 3.81 30.03 0.11 3.66 16 15 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 16 C 0.16 8.35 4.89 85.84 0.42 8.77 16 17 N -0.62 -34.48 3.39 -701.28 -2.37 -36.86 16 18 C -0.25 -15.17 10.21 84.03 0.86 -14.32 16 19 H 0.07 4.23 7.85 -2.91 -0.02 4.20 16 20 C -0.06 -3.41 5.40 84.86 0.46 -2.95 16 21 N -0.94 -58.10 10.67 21.65 0.23 -57.87 16 22 Si 0.98 47.42 29.56 68.60 2.03 49.45 16 23 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 26 C 0.12 5.92 6.05 86.63 0.52 6.45 16 27 C 0.12 4.72 3.41 45.56 0.16 4.87 16 28 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.06 0.70 6.56 -2.39 -0.02 0.68 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.85 6.56 -2.39 -0.02 0.83 16 35 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.84 6.56 -2.39 -0.02 0.83 16 37 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 38 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 39 H 0.13 1.66 8.08 -2.39 -0.02 1.64 16 40 H 0.11 1.90 5.54 -2.39 -0.01 1.89 16 41 H 0.11 1.81 6.33 -2.39 -0.02 1.80 16 42 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.02 0.71 6.72 -2.39 -0.02 0.70 16 44 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.03 1.55 7.34 -2.39 -0.02 1.54 16 46 H 0.01 0.60 6.08 -2.38 -0.01 0.59 16 47 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 48 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.04 2.28 5.19 -2.39 -0.01 2.27 16 Total: -1.00 -76.93 365.63 2.73 -74.20 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.92 Total: 13.35 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 5.84 Total: 16.37 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -4.64 Total: -115.95 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -1.42 Total: -37.43 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -76.93 2.73 -74.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218832892.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.496 kcal (2) G-P(sol) polarization free energy of solvation -76.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds