Wall clock time and date at job start Tue Mar 31 2020 09:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47269 * 2 1 4 4 C 1.52999 * 109.47269 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47107 * 180.02562 * 4 3 2 6 6 C 1.42903 * 114.00243 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47209 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99961 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99903 * 180.02562 * 7 6 5 10 10 C 1.47151 * 121.21752 * 359.71864 * 9 7 6 11 11 C 1.53293 * 107.73773 * 122.70581 * 10 9 7 12 12 C 1.53100 * 110.50893 * 57.55133 * 11 10 9 13 13 H 1.09002 * 113.06532 * 70.88866 * 12 11 10 14 14 C 1.56021 * 106.38725 * 195.31598 * 12 11 10 15 15 C 1.54507 * 102.60979 * 78.36742 * 14 12 11 16 16 N 1.46655 * 107.02708 * 22.26582 * 15 14 12 17 17 C 1.36935 * 125.63687 * 182.09560 * 16 15 14 18 18 H 1.07998 * 119.99906 * 174.57692 * 17 16 15 19 19 C 1.38817 * 120.00117 * 354.57858 * 17 16 15 20 20 N 1.31624 * 119.99847 * 6.75491 * 19 17 16 21 21 Si 1.86798 * 120.00172 * 186.74820 * 19 17 16 22 22 H 1.48508 * 109.46838 * 94.98706 * 21 19 17 23 23 H 1.48497 * 109.47352 * 214.98721 * 21 19 17 24 24 H 1.48503 * 109.47166 * 334.99153 * 21 19 17 25 25 C 1.46464 * 108.29990 * 2.57030 * 16 15 14 26 26 H 1.09004 * 108.42091 * 88.74492 * 25 16 15 27 27 C 1.46758 * 121.21853 * 179.97438 * 9 7 6 28 28 H 1.08997 * 109.47132 * 60.00113 * 1 2 3 29 29 H 1.09004 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47496 * 299.99829 * 1 2 3 31 31 H 1.09005 * 109.47084 * 240.00000 * 2 1 3 32 32 H 1.09003 * 109.47558 * 120.00063 * 2 1 3 33 33 H 1.08997 * 109.47221 * 59.99716 * 3 2 1 34 34 H 1.09006 * 109.46802 * 299.99714 * 3 2 1 35 35 H 1.08997 * 109.47555 * 59.99524 * 4 3 2 36 36 H 1.09006 * 109.46651 * 299.99409 * 4 3 2 37 37 H 1.08993 * 109.47024 * 300.00221 * 6 5 4 38 38 H 1.09000 * 109.46624 * 59.99769 * 6 5 4 39 39 H 1.08995 * 109.76000 * 242.35684 * 10 9 7 40 40 H 1.09003 * 109.75886 * 3.11428 * 10 9 7 41 41 H 1.09000 * 109.38861 * 297.22981 * 11 10 9 42 42 H 1.09000 * 109.19690 * 177.74764 * 11 10 9 43 43 H 1.09000 * 110.78064 * 196.64220 * 14 12 11 44 44 H 1.09000 * 110.78395 * 319.89656 * 14 12 11 45 45 H 1.09001 * 109.89869 * 142.23314 * 15 14 12 46 46 H 1.08999 * 109.90022 * 263.28929 * 15 14 12 47 47 H 0.96992 * 119.99834 * 179.97438 * 20 19 17 48 48 H 1.09010 * 109.22803 * 352.83360 * 27 9 7 49 49 H 1.08997 * 109.22929 * 112.22967 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0463 2.7897 0.0000 6 6 5.4709 2.9026 0.0000 7 6 5.8594 4.3587 0.0000 8 8 5.0010 5.2154 0.0005 9 7 7.1609 4.7088 -0.0005 10 6 8.2243 3.6918 0.0052 11 6 9.1082 3.9334 -1.2237 12 6 9.6788 5.3539 -1.2031 13 1 10.4364 5.4987 -0.4328 14 6 10.2154 5.6337 -2.6412 15 6 8.9239 5.9521 -3.4271 16 7 7.9186 6.3768 -2.4474 17 6 6.6208 6.7103 -2.7293 18 1 5.9322 6.9268 -1.9260 19 6 6.1902 6.7701 -4.0476 20 7 6.9878 6.3788 -5.0189 21 14 4.4788 7.4058 -4.4433 22 1 4.5520 8.8519 -4.7732 23 1 3.9301 6.6603 -5.6045 24 1 3.5940 7.2106 -3.2668 25 6 8.5449 6.3929 -1.1235 26 1 8.9887 7.3756 -0.9643 27 6 7.5694 6.1184 -0.0010 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.9330 0.9287 -0.8908 36 1 3.9336 0.9285 0.8892 37 1 5.8736 2.4187 0.8897 38 1 5.8736 2.4194 -0.8902 39 1 8.8188 3.7852 0.9140 40 1 7.7827 2.6965 -0.0463 41 1 8.5154 3.7973 -2.1282 42 1 9.9291 3.2163 -1.2214 43 1 10.8899 6.4899 -2.6425 44 1 10.7113 4.7520 -3.0473 45 1 9.1144 6.7482 -4.1469 46 1 8.5754 5.0589 -3.9456 47 1 6.6868 6.4203 -5.9400 48 1 6.6884 6.7474 -0.1294 49 1 8.0435 6.3551 0.9514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222489208.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:27 Heat of formation + Delta-G solvation = -60.397804 kcal Electronic energy + Delta-G solvation = -27447.042536 eV Core-core repulsion = 23795.681043 eV Total energy + Delta-G solvation = -3651.361493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.98030 -38.45034 -37.36202 -35.03544 -34.91355 -32.78645 -31.24413 -30.05697 -29.16503 -28.37171 -27.03651 -24.57936 -23.67403 -23.25185 -22.52944 -21.27807 -19.97165 -19.72422 -18.22136 -17.04845 -16.62582 -16.43350 -16.13721 -15.38342 -15.17532 -14.86527 -14.39285 -14.32294 -14.02340 -13.90301 -13.50446 -13.33706 -13.06346 -12.74727 -12.66402 -12.38566 -11.98460 -11.88842 -11.62737 -11.57291 -11.34058 -11.26948 -11.25963 -10.98770 -10.90380 -10.78851 -10.74496 -10.64437 -10.04697 -9.82939 -9.79233 -9.62307 -9.61528 -9.46994 -9.14115 -8.45839 -8.09301 -6.72037 -5.60549 -2.91893 3.01517 3.19680 3.51967 3.57474 3.66133 3.97183 4.63803 4.75916 4.76636 4.90801 4.98500 5.02948 5.11259 5.14261 5.19069 5.29500 5.32964 5.41543 5.46047 5.52890 5.54120 5.62806 5.66489 5.70125 5.71999 5.73427 5.79638 5.94212 5.99196 6.04059 6.09840 6.15311 6.17465 6.27777 6.32481 6.45982 6.49147 6.64826 6.75987 6.95131 7.04418 7.23336 7.64886 7.71446 7.90442 7.98409 8.36101 8.73597 9.35548 9.95606 10.58791 11.51580 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.004483 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.013300 B = 6244.130030 C = 7740.662458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.060 3.940 5 O -0.362 6.362 6 C 0.050 3.950 7 C 0.522 3.478 8 O -0.514 6.514 9 N -0.596 5.596 10 C 0.110 3.890 11 C -0.122 4.122 12 C -0.102 4.102 13 H 0.075 0.925 14 C -0.144 4.144 15 C 0.179 3.821 16 N -0.588 5.588 17 C -0.216 4.216 18 H 0.084 0.916 19 C -0.007 4.007 20 N -0.925 5.925 21 Si 0.901 3.099 22 H -0.291 1.291 23 H -0.294 1.294 24 H -0.276 1.276 25 C 0.153 3.847 26 H 0.028 0.972 27 C 0.116 3.884 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.041 0.959 46 H 0.042 0.958 47 H 0.249 0.751 48 H 0.095 0.905 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 -13.198 11.955 17.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.158 4.158 4 C -0.016 4.016 5 O -0.280 6.280 6 C -0.030 4.030 7 C 0.308 3.692 8 O -0.389 6.389 9 N -0.331 5.331 10 C -0.013 4.013 11 C -0.160 4.160 12 C -0.122 4.122 13 H 0.093 0.907 14 C -0.183 4.183 15 C 0.055 3.945 16 N -0.313 5.313 17 C -0.344 4.344 18 H 0.101 0.899 19 C -0.202 4.202 20 N -0.573 5.573 21 Si 0.732 3.268 22 H -0.218 1.218 23 H -0.220 1.220 24 H -0.201 1.201 25 C 0.045 3.955 26 H 0.045 0.955 27 C -0.007 4.007 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.114 0.886 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.297 -12.548 11.752 17.195 hybrid contribution -0.495 0.008 -0.497 0.702 sum -0.198 -12.540 11.255 16.851 Atomic orbital electron populations 1.21754 0.95471 1.01541 1.02167 1.21436 0.96226 0.96104 1.02063 1.21543 0.93380 0.97050 1.03808 1.22561 0.95376 0.83778 0.99927 1.88029 1.18889 1.25730 1.95332 1.22204 0.83415 0.95651 1.01725 1.19892 0.82339 0.90044 0.76930 1.90710 1.48688 1.51551 1.47917 1.47725 1.04471 1.07427 1.73457 1.21758 0.89681 0.91167 0.98701 1.21907 0.98697 0.96499 0.98927 1.22373 0.97299 0.95050 0.97439 0.90651 1.23181 0.99570 0.99883 0.95652 1.21081 0.84276 0.98909 0.90281 1.44120 1.08328 1.78724 1.00172 1.19123 0.85064 1.38277 0.91950 0.89870 1.24714 0.98044 1.01806 0.95655 1.69985 1.35534 1.53005 0.98814 0.86207 0.84447 0.78349 0.77789 1.21829 1.22034 1.20118 1.20708 0.91460 0.95593 0.87744 0.95471 1.21363 1.00493 0.81609 0.97219 0.92491 0.92732 0.92624 0.91825 0.91976 0.91036 0.90796 0.93258 0.93543 0.91103 0.90482 0.91606 0.90826 0.90041 0.92071 0.92790 0.92370 0.94072 0.94004 0.94117 0.88641 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.04 5.93 -26.73 -0.16 -1.20 16 3 C -0.12 -1.36 5.58 -26.73 -0.15 -1.51 16 4 C 0.06 0.74 5.94 37.16 0.22 0.96 16 5 O -0.36 -6.17 9.88 -55.14 -0.54 -6.72 16 6 C 0.05 0.77 4.78 36.01 0.17 0.94 16 7 C 0.52 10.25 7.79 -10.99 -0.09 10.16 16 8 O -0.51 -12.60 15.96 -14.35 -0.23 -12.83 16 9 N -0.60 -10.43 2.96 -173.84 -0.51 -10.95 16 10 C 0.11 1.45 6.39 -3.53 -0.02 1.42 16 11 C -0.12 -1.81 5.05 -26.53 -0.13 -1.94 16 12 C -0.10 -1.64 3.68 -88.43 -0.33 -1.97 16 13 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.14 -2.59 6.32 -24.32 -0.15 -2.74 16 15 C 0.18 4.28 4.58 -3.17 -0.01 4.27 16 16 N -0.59 -14.64 3.13 -165.06 -0.52 -15.16 16 17 C -0.22 -6.15 9.70 -15.06 -0.15 -6.30 16 18 H 0.08 2.46 6.49 -52.49 -0.34 2.12 16 19 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 20 N -0.93 -27.78 10.36 55.49 0.57 -27.21 16 21 Si 0.90 23.88 29.56 -169.99 -5.02 18.86 16 22 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 23 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 24 H -0.28 -7.47 7.11 56.52 0.40 -7.06 16 25 C 0.15 3.05 3.00 -68.32 -0.21 2.84 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 C 0.12 2.18 5.65 -4.80 -0.03 2.15 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.82 7.90 -51.93 -0.41 0.41 16 38 H 0.08 1.10 7.80 -51.93 -0.40 0.69 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.80 6.02 -51.93 -0.31 0.49 16 41 H 0.08 1.53 6.84 -51.93 -0.36 1.18 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.94 7.98 -51.93 -0.41 0.52 16 45 H 0.04 1.11 7.46 -51.93 -0.39 0.72 16 46 H 0.04 1.11 7.12 -51.93 -0.37 0.74 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.10 2.13 5.55 -51.92 -0.29 1.84 16 49 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -34.72 376.57 -10.10 -44.82 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -8.76 Total: -2.43 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -0.76 Total: 5.95 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.46 Total: -53.31 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.77 Total: -19.55 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.02 Total: 18.86 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.72 -10.10 -44.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222489208.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.581 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds