Wall clock time and date at job start Tue Mar 31 2020 09:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47269 * 2 1 4 4 C 1.52999 * 109.47269 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47107 * 180.02562 * 4 3 2 6 6 C 1.42903 * 114.00243 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47209 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99961 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99903 * 180.02562 * 7 6 5 10 10 C 1.47151 * 121.21752 * 359.71864 * 9 7 6 11 11 C 1.53293 * 107.73773 * 122.70581 * 10 9 7 12 12 C 1.53100 * 110.50893 * 57.55133 * 11 10 9 13 13 H 1.09002 * 113.06532 * 70.88866 * 12 11 10 14 14 C 1.56021 * 106.38725 * 195.31598 * 12 11 10 15 15 C 1.54507 * 102.60979 * 78.36742 * 14 12 11 16 16 N 1.46655 * 107.02708 * 22.26582 * 15 14 12 17 17 C 1.36935 * 125.63687 * 182.09560 * 16 15 14 18 18 H 1.07998 * 119.99906 * 174.57692 * 17 16 15 19 19 C 1.38817 * 120.00117 * 354.57858 * 17 16 15 20 20 N 1.31624 * 119.99847 * 6.75491 * 19 17 16 21 21 Si 1.86798 * 120.00172 * 186.74820 * 19 17 16 22 22 H 1.48508 * 109.46838 * 94.98706 * 21 19 17 23 23 H 1.48497 * 109.47352 * 214.98721 * 21 19 17 24 24 H 1.48503 * 109.47166 * 334.99153 * 21 19 17 25 25 C 1.46464 * 108.29990 * 2.57030 * 16 15 14 26 26 H 1.09004 * 108.42091 * 88.74492 * 25 16 15 27 27 C 1.46758 * 121.21853 * 179.97438 * 9 7 6 28 28 H 1.08997 * 109.47132 * 60.00113 * 1 2 3 29 29 H 1.09004 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47496 * 299.99829 * 1 2 3 31 31 H 1.09005 * 109.47084 * 240.00000 * 2 1 3 32 32 H 1.09003 * 109.47558 * 120.00063 * 2 1 3 33 33 H 1.08997 * 109.47221 * 59.99716 * 3 2 1 34 34 H 1.09006 * 109.46802 * 299.99714 * 3 2 1 35 35 H 1.08997 * 109.47555 * 59.99524 * 4 3 2 36 36 H 1.09006 * 109.46651 * 299.99409 * 4 3 2 37 37 H 1.08993 * 109.47024 * 300.00221 * 6 5 4 38 38 H 1.09000 * 109.46624 * 59.99769 * 6 5 4 39 39 H 1.08995 * 109.76000 * 242.35684 * 10 9 7 40 40 H 1.09003 * 109.75886 * 3.11428 * 10 9 7 41 41 H 1.09000 * 109.38861 * 297.22981 * 11 10 9 42 42 H 1.09000 * 109.19690 * 177.74764 * 11 10 9 43 43 H 1.09000 * 110.78064 * 196.64220 * 14 12 11 44 44 H 1.09000 * 110.78395 * 319.89656 * 14 12 11 45 45 H 1.09001 * 109.89869 * 142.23314 * 15 14 12 46 46 H 1.08999 * 109.90022 * 263.28929 * 15 14 12 47 47 H 0.96992 * 119.99834 * 179.97438 * 20 19 17 48 48 H 1.09010 * 109.22803 * 352.83360 * 27 9 7 49 49 H 1.08997 * 109.22929 * 112.22967 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0463 2.7897 0.0000 6 6 5.4709 2.9026 0.0000 7 6 5.8594 4.3587 0.0000 8 8 5.0010 5.2154 0.0005 9 7 7.1609 4.7088 -0.0005 10 6 8.2243 3.6918 0.0052 11 6 9.1082 3.9334 -1.2237 12 6 9.6788 5.3539 -1.2031 13 1 10.4364 5.4987 -0.4328 14 6 10.2154 5.6337 -2.6412 15 6 8.9239 5.9521 -3.4271 16 7 7.9186 6.3768 -2.4474 17 6 6.6208 6.7103 -2.7293 18 1 5.9322 6.9268 -1.9260 19 6 6.1902 6.7701 -4.0476 20 7 6.9878 6.3788 -5.0189 21 14 4.4788 7.4058 -4.4433 22 1 4.5520 8.8519 -4.7732 23 1 3.9301 6.6603 -5.6045 24 1 3.5940 7.2106 -3.2668 25 6 8.5449 6.3929 -1.1235 26 1 8.9887 7.3756 -0.9643 27 6 7.5694 6.1184 -0.0010 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.9330 0.9287 -0.8908 36 1 3.9336 0.9285 0.8892 37 1 5.8736 2.4187 0.8897 38 1 5.8736 2.4194 -0.8902 39 1 8.8188 3.7852 0.9140 40 1 7.7827 2.6965 -0.0463 41 1 8.5154 3.7973 -2.1282 42 1 9.9291 3.2163 -1.2214 43 1 10.8899 6.4899 -2.6425 44 1 10.7113 4.7520 -3.0473 45 1 9.1144 6.7482 -4.1469 46 1 8.5754 5.0589 -3.9456 47 1 6.6868 6.4203 -5.9400 48 1 6.6884 6.7474 -0.1294 49 1 8.0435 6.3551 0.9514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222489208.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:26 Heat of formation + Delta-G solvation = -82.761638 kcal Electronic energy + Delta-G solvation = -27448.012304 eV Core-core repulsion = 23795.681043 eV Total energy + Delta-G solvation = -3652.331262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.41416 -39.86234 -38.64449 -36.54616 -35.82906 -34.66045 -32.87194 -31.44239 -30.30101 -30.04308 -28.29017 -26.49332 -25.13135 -24.19401 -23.85866 -22.09549 -21.73188 -21.17790 -19.68974 -18.50554 -18.29868 -17.51509 -17.47875 -16.92712 -16.52905 -16.27305 -16.03584 -15.69197 -15.44950 -15.27027 -14.84597 -14.45728 -14.27077 -14.06738 -13.87177 -13.80218 -13.54597 -13.19790 -13.12805 -12.97692 -12.84077 -12.67298 -12.54005 -12.43713 -12.31425 -12.06273 -11.98457 -11.88652 -11.64893 -11.55066 -11.38791 -11.26476 -11.12737 -10.68836 -10.66216 -10.61532 -9.49044 -8.80222 -7.86400 -5.15162 1.33690 1.34955 1.47366 1.64695 1.89827 2.46693 2.88294 3.31894 3.50510 3.69646 3.88927 3.94344 3.96015 4.04274 4.12509 4.14992 4.21183 4.25693 4.31588 4.40656 4.43560 4.49305 4.52616 4.62894 4.66964 4.69083 4.75062 4.87455 4.88636 4.92097 4.93063 5.01132 5.03971 5.15993 5.18795 5.21044 5.32705 5.33935 5.42462 5.55942 5.67365 5.69814 5.75081 5.83045 6.13956 6.24087 6.57025 7.15977 7.31273 7.84577 8.45391 9.23841 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.004483 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.013300 B = 6244.130030 C = 7740.662458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.121 4.121 4 C 0.055 3.945 5 O -0.405 6.405 6 C 0.057 3.943 7 C 0.504 3.496 8 O -0.582 6.582 9 N -0.595 5.595 10 C 0.106 3.894 11 C -0.120 4.120 12 C -0.084 4.084 13 H 0.125 0.875 14 C -0.130 4.130 15 C 0.186 3.814 16 N -0.605 5.605 17 C -0.206 4.206 18 H 0.064 0.936 19 C -0.061 4.061 20 N -0.946 5.946 21 Si 0.950 3.050 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.140 3.860 26 H 0.027 0.973 27 C 0.119 3.881 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.033 0.967 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.083 0.917 45 H -0.003 1.003 46 H 0.005 0.995 47 H 0.243 0.757 48 H 0.046 0.954 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 -15.940 14.544 21.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.159 4.159 4 C -0.020 4.020 5 O -0.324 6.324 6 C -0.022 4.022 7 C 0.292 3.708 8 O -0.462 6.462 9 N -0.328 5.328 10 C -0.015 4.015 11 C -0.158 4.158 12 C -0.103 4.103 13 H 0.143 0.857 14 C -0.169 4.169 15 C 0.061 3.939 16 N -0.329 5.329 17 C -0.336 4.336 18 H 0.082 0.918 19 C -0.254 4.254 20 N -0.597 5.597 21 Si 0.781 3.219 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.033 3.967 26 H 0.044 0.956 27 C -0.005 4.005 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.051 0.949 42 H 0.123 0.877 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.015 0.985 46 H 0.023 0.977 47 H 0.052 0.948 48 H 0.065 0.935 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.800 -15.318 14.369 21.188 hybrid contribution -1.233 0.889 -1.246 1.966 sum 1.567 -14.429 13.123 19.567 Atomic orbital electron populations 1.21776 0.95210 1.02393 1.01736 1.21409 0.96430 0.94147 1.03148 1.21585 0.93358 0.98719 1.02261 1.22812 0.95507 0.82005 1.01710 1.87992 1.19985 1.28755 1.95712 1.22266 0.83112 0.92576 1.04282 1.20878 0.82468 0.91635 0.75791 1.90672 1.50688 1.53665 1.51150 1.47928 1.05079 1.07844 1.71998 1.22179 0.88578 0.91132 0.99644 1.21889 0.99701 0.96599 0.97624 1.22439 0.96227 0.94405 0.97228 0.85708 1.23041 0.96298 1.01468 0.96046 1.20831 0.87062 0.95611 0.90358 1.44300 1.07378 1.78301 1.02965 1.19111 0.86712 1.36500 0.91251 0.91807 1.25285 1.00719 1.03387 0.95981 1.70158 1.36434 1.54550 0.98508 0.85454 0.81427 0.78237 0.76810 1.21051 1.21781 1.21588 1.21053 0.92847 0.97218 0.85538 0.95567 1.21225 0.98391 0.82267 0.98612 0.93425 0.91192 0.92657 0.91276 0.90234 0.91803 0.93226 0.92402 0.90533 0.86332 0.89455 0.87257 0.88055 0.94857 0.87662 0.91556 0.89877 0.98478 0.97721 0.94797 0.93521 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 71.98 0.71 -1.59 16 2 C -0.11 -1.78 5.93 30.59 0.18 -1.60 16 3 C -0.12 -2.72 5.58 30.59 0.17 -2.55 16 4 C 0.06 1.27 5.94 71.98 0.43 1.70 16 5 O -0.40 -13.74 9.88 -129.94 -1.28 -15.03 16 6 C 0.06 1.63 4.78 71.24 0.34 1.97 16 7 C 0.50 19.78 7.79 87.66 0.68 20.46 16 8 O -0.58 -30.03 15.96 16.01 0.26 -29.78 16 9 N -0.60 -19.74 2.96 -822.30 -2.44 -22.18 16 10 C 0.11 2.24 6.39 86.35 0.55 2.79 16 11 C -0.12 -3.03 5.05 30.73 0.16 -2.87 16 12 C -0.08 -2.35 3.68 -9.38 -0.03 -2.38 16 13 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 14 C -0.13 -4.34 6.32 32.15 0.20 -4.13 16 15 C 0.19 9.14 4.58 86.86 0.40 9.54 16 16 N -0.60 -30.95 3.13 -676.14 -2.12 -33.07 16 17 C -0.21 -12.33 9.70 84.03 0.82 -11.51 16 18 H 0.06 4.04 6.49 -2.91 -0.02 4.02 16 19 C -0.06 -3.76 5.48 84.86 0.46 -3.29 16 20 N -0.95 -59.65 10.36 21.65 0.22 -59.43 16 21 Si 0.95 51.67 29.56 68.60 2.03 53.70 16 22 H -0.28 -14.91 7.11 99.48 0.71 -14.21 16 23 H -0.29 -15.58 7.11 99.48 0.71 -14.88 16 24 H -0.29 -16.25 7.11 99.48 0.71 -15.55 16 25 C 0.14 5.41 3.00 44.76 0.13 5.54 16 26 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 27 C 0.12 4.34 5.65 85.75 0.48 4.83 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.31 8.14 -2.38 -0.02 1.30 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.12 2.22 7.90 -2.39 -0.02 2.20 16 38 H 0.09 2.30 7.80 -2.39 -0.02 2.28 16 39 H 0.11 1.51 8.14 -2.39 -0.02 1.50 16 40 H 0.10 1.63 6.02 -2.39 -0.01 1.61 16 41 H 0.03 1.18 6.84 -2.39 -0.02 1.16 16 42 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.08 2.39 7.98 -2.39 -0.02 2.37 16 45 H 0.00 -0.17 7.46 -2.39 -0.02 -0.19 16 46 H 0.00 0.25 7.12 -2.39 -0.02 0.24 16 47 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 48 H 0.05 2.18 5.55 -2.38 -0.01 2.16 16 49 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -85.63 376.57 3.27 -82.37 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 0.90 Total: 6.51 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 5.69 Total: 16.90 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -4.33 Total: -114.67 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -1.03 Total: -44.80 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.03 Total: 53.70 kcal Total: -85.63 3.27 -82.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222489208.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.395 kcal (2) G-P(sol) polarization free energy of solvation -85.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds