Wall clock time and date at job start Tue Mar 31 2020 09:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99858 * 2 1 4 4 C 1.53009 * 109.46864 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47216 * 59.99911 * 4 3 2 6 6 C 1.52996 * 109.46922 * 299.99642 * 4 3 2 7 7 C 1.50700 * 109.47037 * 180.02562 * 4 3 2 8 8 O 1.21280 * 120.00058 * 9.73584 * 7 4 3 9 9 N 1.34774 * 119.99951 * 189.74312 * 7 4 3 10 10 C 1.44756 * 117.18584 * 356.68096 * 9 7 4 11 11 C 1.50428 * 111.49725 * 213.72138 * 10 9 7 12 12 C 1.49438 * 114.72017 * 317.01970 * 11 10 9 13 13 H 1.08997 * 107.67803 * 166.27787 * 12 11 10 14 14 C 1.54518 * 112.97360 * 284.60655 * 12 11 10 15 15 C 1.55252 * 100.54533 * 165.81486 * 14 12 11 16 16 N 1.47469 * 105.14456 * 323.75375 * 15 14 12 17 17 C 1.36934 * 125.66434 * 200.99409 * 16 15 14 18 18 H 1.07998 * 120.00055 * 180.02562 * 17 16 15 19 19 C 1.38816 * 120.00064 * 0.02816 * 17 16 15 20 20 N 1.31620 * 119.99479 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99976 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46956 * 89.99796 * 21 19 17 23 23 H 1.48497 * 109.47049 * 209.99679 * 21 19 17 24 24 H 1.48502 * 109.47435 * 329.99629 * 21 19 17 25 25 C 1.48534 * 108.53730 * 20.97469 * 16 15 14 26 26 H 1.09001 * 108.75683 * 121.12154 * 25 16 15 27 27 C 1.43784 * 117.18303 * 176.71137 * 9 7 4 28 28 H 1.08995 * 109.47368 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47109 * 300.00542 * 1 2 3 30 30 H 1.09002 * 109.47089 * 59.99774 * 1 2 3 31 31 H 1.08993 * 109.47490 * 60.00336 * 3 2 1 32 32 H 1.08995 * 109.47260 * 299.99496 * 3 2 1 33 33 H 1.09000 * 109.47304 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.47327 * 300.00047 * 5 4 3 35 35 H 1.09004 * 109.47167 * 59.99749 * 5 4 3 36 36 H 1.08997 * 109.47638 * 325.21077 * 6 4 3 37 37 H 1.09000 * 109.47011 * 85.20567 * 6 4 3 38 38 H 1.08997 * 109.47197 * 205.20763 * 6 4 3 39 39 H 1.09000 * 109.02967 * 334.34086 * 10 9 7 40 40 H 1.08999 * 109.02749 * 93.18590 * 10 9 7 41 41 H 1.08998 * 107.94164 * 195.86101 * 11 10 9 42 42 H 1.08999 * 108.52049 * 78.60634 * 11 10 9 43 43 H 1.09007 * 111.20229 * 47.98895 * 14 12 11 44 44 H 1.09003 * 111.23934 * 283.65412 * 14 12 11 45 45 H 1.08996 * 110.31959 * 82.69900 * 15 14 12 46 46 H 1.09001 * 110.32163 * 204.80678 * 15 14 12 47 47 H 0.97006 * 119.99260 * 180.02562 * 20 19 17 48 48 H 1.08994 * 108.05991 * 35.56127 * 27 9 7 49 49 H 1.08999 * 108.06158 * 279.06088 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9864 0.4256 -1.2501 6 6 3.9874 0.4252 1.2483 7 6 4.1485 2.5613 0.0000 8 8 3.4495 3.5362 0.1785 9 7 5.4734 2.7091 -0.1979 10 6 6.2609 1.5019 -0.3312 11 6 7.6379 1.6751 0.2492 12 6 8.2967 2.9748 -0.0821 13 1 9.1566 3.0878 0.5781 14 6 8.8212 3.0322 -1.5345 15 6 9.0846 4.5551 -1.6815 16 7 8.0036 5.2083 -0.9203 17 6 7.5805 6.5005 -1.0832 18 1 6.7775 6.8867 -0.4731 19 6 8.1839 7.3139 -2.0325 20 7 9.1629 6.8432 -2.7757 21 14 7.6064 9.0763 -2.2552 22 1 8.3835 9.9689 -1.3583 23 1 7.8133 9.4904 -3.6662 24 1 6.1632 9.1707 -1.9182 25 6 7.4517 4.2293 0.0509 26 1 7.5625 4.6335 1.0572 27 6 5.9827 4.0524 -0.2578 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 5.0731 0.3399 -1.2508 34 1 3.5431 -0.5702 -1.2502 35 1 3.6644 0.9666 -2.1399 36 1 3.3308 0.6735 2.0821 37 1 3.9426 -0.6471 1.0576 38 1 5.0107 0.7079 1.4950 39 1 5.7538 0.6878 0.1867 40 1 6.3482 1.2494 -1.3880 41 1 8.2637 0.8640 -0.1232 42 1 7.5702 1.5869 1.3335 43 1 8.0634 2.6931 -2.2409 44 1 9.7427 2.4604 -1.6444 45 1 10.0552 4.8139 -1.2586 46 1 9.0392 4.8476 -2.7306 47 1 9.5848 7.4118 -3.4389 48 1 5.4140 4.6610 0.4451 49 1 5.7992 4.4390 -1.2603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223122586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:35 Heat of formation + Delta-G solvation = -26.348476 kcal Electronic energy + Delta-G solvation = -28010.170536 eV Core-core repulsion = 24360.285533 eV Total energy + Delta-G solvation = -3649.885003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.03646 -38.73889 -37.74769 -35.88137 -34.63799 -33.12689 -31.52997 -29.36414 -28.64150 -27.56112 -27.39659 -25.87464 -24.85981 -24.33827 -22.65873 -21.72478 -20.32355 -19.24058 -17.62033 -17.02169 -16.84184 -16.22185 -16.01747 -15.66114 -15.42082 -14.90556 -14.80184 -14.57937 -14.32417 -13.90417 -13.71513 -13.66177 -13.22018 -12.63183 -12.51666 -12.30294 -12.19390 -12.14986 -11.91900 -11.74691 -11.61593 -11.38603 -11.21175 -11.13305 -10.99103 -10.82789 -10.77251 -10.45669 -10.08746 -9.93417 -9.85397 -9.80094 -9.63645 -9.49578 -9.36742 -8.65071 -8.16618 -6.89871 -5.66974 -3.07488 2.79327 3.10095 3.41568 3.47066 3.49280 3.78670 4.40751 4.47565 4.69213 4.73858 4.91108 5.00039 5.01436 5.09601 5.15083 5.19284 5.36250 5.40105 5.44284 5.48159 5.50123 5.51721 5.57543 5.66040 5.72116 5.74301 5.79710 5.83970 5.90219 5.98631 6.05052 6.12877 6.16486 6.20901 6.25184 6.48998 6.57507 6.64085 6.82169 6.96817 7.00009 7.10045 7.51755 7.60705 7.66123 7.84471 8.30823 8.40966 9.20619 9.80016 10.44729 11.38163 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.003930 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.331001 B = 7123.378683 C = 8127.964242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.087 3.913 4 C -0.078 4.078 5 C -0.166 4.166 6 C -0.142 4.142 7 C 0.512 3.488 8 O -0.543 6.543 9 N -0.581 5.581 10 C 0.091 3.909 11 C -0.115 4.115 12 C -0.091 4.091 13 H 0.065 0.935 14 C -0.140 4.140 15 C 0.157 3.843 16 N -0.598 5.598 17 C -0.224 4.224 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.163 3.837 26 H 0.039 0.961 27 C 0.105 3.895 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.015 0.985 46 H 0.097 0.903 47 H 0.252 0.748 48 H 0.066 0.934 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 -17.822 5.489 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C 0.010 3.990 4 C -0.081 4.081 5 C -0.223 4.223 6 C -0.199 4.199 7 C 0.298 3.702 8 O -0.421 6.421 9 N -0.313 5.313 10 C -0.031 4.031 11 C -0.154 4.154 12 C -0.111 4.111 13 H 0.084 0.916 14 C -0.179 4.179 15 C 0.033 3.967 16 N -0.323 5.323 17 C -0.352 4.352 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.056 3.944 26 H 0.057 0.943 27 C -0.019 4.019 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.033 0.967 46 H 0.115 0.885 47 H 0.062 0.938 48 H 0.085 0.915 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.138 -17.212 5.431 20.230 hybrid contribution -0.418 1.306 -0.126 1.378 sum -9.556 -15.906 5.305 19.299 Atomic orbital electron populations 1.22710 0.81077 1.02461 1.00102 1.87794 1.19494 1.27925 1.95511 1.22260 0.91281 0.83971 1.01508 1.20639 0.94869 0.93794 0.98847 1.22497 1.03729 1.00650 0.95429 1.21987 1.01533 1.00711 0.95716 1.20414 0.82704 0.90283 0.76774 1.90683 1.61005 1.41080 1.49350 1.46698 1.06822 1.07236 1.70534 1.21513 0.92758 0.87583 1.01259 1.20494 0.95563 0.98364 1.00957 1.20607 0.98290 0.93333 0.98824 0.91631 1.23040 0.99359 1.00740 0.94762 1.21847 0.89677 0.85345 0.99855 1.45055 1.38767 1.08577 1.39878 1.19066 1.14455 0.85704 1.15942 0.90420 1.24771 0.98372 0.98536 0.98730 1.69866 1.26497 1.34906 1.25701 0.86097 0.78211 0.84343 0.77056 1.21623 1.21668 1.20577 1.20325 0.90009 0.90025 0.94090 0.94317 1.21363 0.97020 0.80241 1.03266 0.89715 0.94128 0.94119 0.92303 0.92730 0.89540 0.90847 0.92370 0.91904 0.90767 0.91271 0.88306 0.91697 0.90653 0.92138 0.92326 0.92214 0.96689 0.88544 0.93781 0.91532 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.31 9.66 -35.23 -0.34 -4.65 16 3 C 0.09 1.08 4.02 37.16 0.15 1.23 16 4 C -0.08 -0.96 0.58 -155.66 -0.09 -1.05 16 5 C -0.17 -1.78 7.72 37.15 0.29 -1.49 16 6 C -0.14 -1.44 7.72 37.16 0.29 -1.15 16 7 C 0.51 8.33 6.32 -10.99 -0.07 8.27 16 8 O -0.54 -10.93 15.28 5.56 0.08 -10.85 16 9 N -0.58 -9.36 3.12 -179.86 -0.56 -9.92 16 10 C 0.09 1.12 3.88 -6.26 -0.02 1.10 16 11 C -0.12 -1.42 5.35 -29.77 -0.16 -1.58 16 12 C -0.09 -1.51 2.47 -92.17 -0.23 -1.74 16 13 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 14 C -0.14 -2.52 6.54 -24.74 -0.16 -2.68 16 15 C 0.16 3.73 5.76 -2.32 -0.01 3.72 16 16 N -0.60 -14.94 2.96 -163.66 -0.48 -15.43 16 17 C -0.22 -6.20 9.66 -15.06 -0.15 -6.34 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 20 N -0.92 -26.77 10.15 55.49 0.56 -26.20 16 21 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 C 0.16 3.33 3.43 -68.33 -0.23 3.10 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 C 0.11 2.11 5.40 -6.41 -0.03 2.07 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.77 7.97 -51.93 -0.41 0.35 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.84 3.54 -51.93 -0.18 0.65 16 34 H 0.07 0.71 7.66 -51.93 -0.40 0.31 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 37 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 38 H 0.07 0.68 5.66 -51.93 -0.29 0.38 16 39 H 0.10 0.98 2.96 -51.93 -0.15 0.82 16 40 H 0.07 0.78 6.85 -51.93 -0.36 0.42 16 41 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 2.60 6.09 -51.93 -0.32 2.28 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.07 1.43 7.20 -51.93 -0.37 1.06 16 49 H 0.07 1.66 7.54 -51.93 -0.39 1.27 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -31.78 362.35 -8.03 -39.81 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.31 Total: -0.09 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 0.58 Total: 4.49 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.48 Total: -51.56 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.26 Total: -15.50 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.78 -8.03 -39.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223122586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.458 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds