Wall clock time and date at job start Tue Mar 31 2020 09:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99858 * 2 1 4 4 C 1.53009 * 109.46864 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47216 * 59.99911 * 4 3 2 6 6 C 1.52996 * 109.46922 * 299.99642 * 4 3 2 7 7 C 1.50700 * 109.47037 * 180.02562 * 4 3 2 8 8 O 1.21280 * 120.00058 * 9.73584 * 7 4 3 9 9 N 1.34774 * 119.99951 * 189.74312 * 7 4 3 10 10 C 1.44756 * 117.18584 * 356.68096 * 9 7 4 11 11 C 1.50428 * 111.49725 * 213.72138 * 10 9 7 12 12 C 1.49438 * 114.72017 * 317.01970 * 11 10 9 13 13 H 1.08997 * 107.67803 * 166.27787 * 12 11 10 14 14 C 1.54518 * 112.97360 * 284.60655 * 12 11 10 15 15 C 1.55252 * 100.54533 * 165.81486 * 14 12 11 16 16 N 1.47469 * 105.14456 * 323.75375 * 15 14 12 17 17 C 1.36934 * 125.66434 * 200.99409 * 16 15 14 18 18 H 1.07998 * 120.00055 * 180.02562 * 17 16 15 19 19 C 1.38816 * 120.00064 * 0.02816 * 17 16 15 20 20 N 1.31620 * 119.99479 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99976 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46956 * 89.99796 * 21 19 17 23 23 H 1.48497 * 109.47049 * 209.99679 * 21 19 17 24 24 H 1.48502 * 109.47435 * 329.99629 * 21 19 17 25 25 C 1.48534 * 108.53730 * 20.97469 * 16 15 14 26 26 H 1.09001 * 108.75683 * 121.12154 * 25 16 15 27 27 C 1.43784 * 117.18303 * 176.71137 * 9 7 4 28 28 H 1.08995 * 109.47368 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47109 * 300.00542 * 1 2 3 30 30 H 1.09002 * 109.47089 * 59.99774 * 1 2 3 31 31 H 1.08993 * 109.47490 * 60.00336 * 3 2 1 32 32 H 1.08995 * 109.47260 * 299.99496 * 3 2 1 33 33 H 1.09000 * 109.47304 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.47327 * 300.00047 * 5 4 3 35 35 H 1.09004 * 109.47167 * 59.99749 * 5 4 3 36 36 H 1.08997 * 109.47638 * 325.21077 * 6 4 3 37 37 H 1.09000 * 109.47011 * 85.20567 * 6 4 3 38 38 H 1.08997 * 109.47197 * 205.20763 * 6 4 3 39 39 H 1.09000 * 109.02967 * 334.34086 * 10 9 7 40 40 H 1.08999 * 109.02749 * 93.18590 * 10 9 7 41 41 H 1.08998 * 107.94164 * 195.86101 * 11 10 9 42 42 H 1.08999 * 108.52049 * 78.60634 * 11 10 9 43 43 H 1.09007 * 111.20229 * 47.98895 * 14 12 11 44 44 H 1.09003 * 111.23934 * 283.65412 * 14 12 11 45 45 H 1.08996 * 110.31959 * 82.69900 * 15 14 12 46 46 H 1.09001 * 110.32163 * 204.80678 * 15 14 12 47 47 H 0.97006 * 119.99260 * 180.02562 * 20 19 17 48 48 H 1.08994 * 108.05991 * 35.56127 * 27 9 7 49 49 H 1.08999 * 108.06158 * 279.06088 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9864 0.4256 -1.2501 6 6 3.9874 0.4252 1.2483 7 6 4.1485 2.5613 0.0000 8 8 3.4495 3.5362 0.1785 9 7 5.4734 2.7091 -0.1979 10 6 6.2609 1.5019 -0.3312 11 6 7.6379 1.6751 0.2492 12 6 8.2967 2.9748 -0.0821 13 1 9.1566 3.0878 0.5781 14 6 8.8212 3.0322 -1.5345 15 6 9.0846 4.5551 -1.6815 16 7 8.0036 5.2083 -0.9203 17 6 7.5805 6.5005 -1.0832 18 1 6.7775 6.8867 -0.4731 19 6 8.1839 7.3139 -2.0325 20 7 9.1629 6.8432 -2.7757 21 14 7.6064 9.0763 -2.2552 22 1 8.3835 9.9689 -1.3583 23 1 7.8133 9.4904 -3.6662 24 1 6.1632 9.1707 -1.9182 25 6 7.4517 4.2293 0.0509 26 1 7.5625 4.6335 1.0572 27 6 5.9827 4.0524 -0.2578 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 5.0731 0.3399 -1.2508 34 1 3.5431 -0.5702 -1.2502 35 1 3.6644 0.9666 -2.1399 36 1 3.3308 0.6735 2.0821 37 1 3.9426 -0.6471 1.0576 38 1 5.0107 0.7079 1.4950 39 1 5.7538 0.6878 0.1867 40 1 6.3482 1.2494 -1.3880 41 1 8.2637 0.8640 -0.1232 42 1 7.5702 1.5869 1.3335 43 1 8.0634 2.6931 -2.2409 44 1 9.7427 2.4604 -1.6444 45 1 10.0552 4.8139 -1.2586 46 1 9.0392 4.8476 -2.7306 47 1 9.5848 7.4118 -3.4389 48 1 5.4140 4.6610 0.4451 49 1 5.7992 4.4390 -1.2603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223122586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:34 Heat of formation + Delta-G solvation = -47.151052 kcal Electronic energy + Delta-G solvation = -28011.072604 eV Core-core repulsion = 24360.285533 eV Total energy + Delta-G solvation = -3650.787071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.28458 -40.11103 -38.80438 -37.25953 -35.83748 -34.78595 -33.21617 -30.92944 -30.30454 -28.36547 -28.29766 -26.93173 -26.32077 -25.93123 -24.02433 -22.94559 -22.14467 -20.45315 -19.01513 -18.86380 -17.93327 -17.42647 -17.06059 -16.90785 -16.73468 -16.51763 -16.21477 -15.78113 -15.68070 -15.26336 -15.02907 -14.73903 -14.30072 -14.23943 -13.80467 -13.56434 -13.41033 -13.39783 -13.14848 -13.08163 -12.88268 -12.80044 -12.66396 -12.60290 -12.27104 -12.12197 -12.02713 -12.01663 -11.70695 -11.58189 -11.32717 -11.16299 -11.09578 -10.78676 -10.65821 -10.60091 -9.54897 -8.95778 -7.82134 -5.24206 1.41457 1.42660 1.51678 1.51729 1.89386 2.44822 2.83549 3.27821 3.36162 3.54218 3.71755 3.78577 3.81972 3.89726 3.99391 4.10577 4.21754 4.22806 4.38502 4.43183 4.47054 4.48312 4.60391 4.61391 4.62612 4.71778 4.75197 4.84776 4.88881 4.91554 4.94118 4.97097 4.99609 5.04814 5.07509 5.19354 5.30081 5.34006 5.37991 5.45958 5.52756 5.67159 5.71270 5.81607 6.12831 6.26283 6.37411 7.07844 7.10987 7.73386 8.37129 9.20440 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.003930 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.331001 B = 7123.378683 C = 8127.964242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.390 6.390 3 C 0.091 3.909 4 C -0.071 4.071 5 C -0.162 4.162 6 C -0.139 4.139 7 C 0.505 3.495 8 O -0.592 6.592 9 N -0.581 5.581 10 C 0.081 3.919 11 C -0.113 4.113 12 C -0.080 4.080 13 H 0.071 0.929 14 C -0.122 4.122 15 C 0.157 3.843 16 N -0.618 5.618 17 C -0.235 4.235 18 H 0.070 0.930 19 C -0.061 4.061 20 N -0.944 5.944 21 Si 0.972 3.028 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.160 3.840 26 H 0.028 0.972 27 C 0.131 3.869 28 H 0.108 0.892 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.134 0.866 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.094 0.906 45 H -0.010 1.010 46 H 0.059 0.941 47 H 0.247 0.753 48 H 0.039 0.961 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.119 -21.520 6.342 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.309 6.309 3 C 0.014 3.986 4 C -0.074 4.074 5 C -0.219 4.219 6 C -0.196 4.196 7 C 0.294 3.706 8 O -0.473 6.473 9 N -0.311 5.311 10 C -0.039 4.039 11 C -0.151 4.151 12 C -0.099 4.099 13 H 0.089 0.911 14 C -0.160 4.160 15 C 0.032 3.968 16 N -0.343 5.343 17 C -0.364 4.364 18 H 0.088 0.912 19 C -0.254 4.254 20 N -0.594 5.594 21 Si 0.801 3.199 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.203 1.203 25 C 0.053 3.947 26 H 0.046 0.954 27 C 0.005 3.995 28 H 0.127 0.873 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.151 0.849 40 H 0.094 0.906 41 H 0.134 0.866 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.112 0.888 45 H 0.008 0.992 46 H 0.077 0.923 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.234 -20.967 6.301 23.761 hybrid contribution -0.464 2.475 -0.372 2.545 sum -9.698 -18.493 5.929 21.707 Atomic orbital electron populations 1.22938 0.79631 1.04127 1.00401 1.87766 1.21037 1.26600 1.95492 1.22092 0.91741 0.84589 1.00183 1.20637 0.94402 0.91241 1.01164 1.22513 1.04828 1.00893 0.93618 1.22015 1.01738 1.01779 0.94095 1.21290 0.82379 0.91630 0.75326 1.90658 1.62110 1.43170 1.51393 1.46739 1.07413 1.06805 1.70184 1.21966 0.92814 0.86438 1.02687 1.20543 0.95499 0.96550 1.02488 1.20610 0.97935 0.93582 0.97810 0.91061 1.22889 1.01098 0.96169 0.95843 1.21669 0.88313 0.89638 0.97194 1.45314 1.39236 1.08641 1.41148 1.19286 1.14063 0.87440 1.15660 0.91245 1.25519 0.98914 1.02133 0.98868 1.70099 1.27419 1.35737 1.26110 0.85170 0.77781 0.80176 0.76792 1.21095 1.21574 1.20276 1.20514 0.90592 0.91281 0.92313 0.95378 1.20713 0.96497 0.82548 0.99752 0.87338 0.93731 0.94011 0.93531 0.94410 0.87922 0.88965 0.93954 0.92324 0.88152 0.90410 0.84905 0.90567 0.86556 0.90203 0.92058 0.88805 0.99239 0.92307 0.94329 0.94233 0.95359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.39 -7.77 9.66 -148.98 -1.44 -9.21 16 3 C 0.09 2.20 4.02 71.99 0.29 2.49 16 4 C -0.07 -1.60 0.58 -52.93 -0.03 -1.63 16 5 C -0.16 -2.94 7.72 71.98 0.56 -2.38 16 6 C -0.14 -2.29 7.72 71.98 0.56 -1.74 16 7 C 0.50 16.32 6.32 87.66 0.55 16.87 16 8 O -0.59 -24.84 15.28 -3.03 -0.05 -24.89 16 9 N -0.58 -18.18 3.12 -841.34 -2.62 -20.80 16 10 C 0.08 1.68 3.88 85.87 0.33 2.01 16 11 C -0.11 -2.23 5.35 28.62 0.15 -2.07 16 12 C -0.08 -2.45 2.47 -11.80 -0.03 -2.48 16 13 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 14 C -0.12 -4.13 6.54 31.88 0.21 -3.92 16 15 C 0.16 7.63 5.76 86.97 0.50 8.13 16 16 N -0.62 -32.15 2.96 -671.71 -1.99 -34.14 16 17 C -0.24 -13.68 9.66 84.03 0.81 -12.87 16 18 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 19 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 20 N -0.94 -57.10 10.15 21.65 0.22 -56.88 16 21 Si 0.97 47.66 29.55 68.60 2.03 49.68 16 22 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 25 C 0.16 6.61 3.43 43.61 0.15 6.76 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 27 C 0.13 5.42 5.40 86.28 0.47 5.89 16 28 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 1.22 7.97 -2.39 -0.02 1.20 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.51 3.54 -2.39 -0.01 1.50 16 34 H 0.09 1.38 7.66 -2.39 -0.02 1.36 16 35 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.06 1.05 7.89 -2.39 -0.02 1.03 16 37 H 0.10 1.19 7.89 -2.39 -0.02 1.17 16 38 H 0.08 1.16 5.66 -2.39 -0.01 1.14 16 39 H 0.13 1.91 2.96 -2.39 -0.01 1.90 16 40 H 0.08 1.47 6.85 -2.39 -0.02 1.46 16 41 H 0.12 1.52 8.08 -2.39 -0.02 1.50 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.06 2.06 8.09 -2.38 -0.02 2.04 16 44 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 45 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 46 H 0.06 3.31 6.09 -2.39 -0.01 3.29 16 47 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 48 H 0.04 1.81 7.20 -2.39 -0.02 1.79 16 49 H 0.03 1.40 7.54 -2.39 -0.02 1.38 16 Total: -1.00 -75.55 362.35 3.31 -72.24 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.92 Total: 10.45 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 6.23 Total: 13.54 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -4.39 Total: -111.81 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -1.49 Total: -34.10 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.68 kcal Total: -75.55 3.31 -72.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223122586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.086 kcal (2) G-P(sol) polarization free energy of solvation -75.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds