Wall clock time and date at job start Tue Mar 31 2020 09:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 120.00136 * 2 1 4 4 H 1.07992 * 120.00734 * 146.77595 * 3 2 1 5 5 C 1.38810 * 119.99735 * 326.77281 * 3 2 1 6 6 N 1.31618 * 120.00078 * 154.30645 * 5 3 2 7 7 Si 1.86800 * 120.00093 * 334.30759 * 5 3 2 8 8 H 1.48501 * 109.47193 * 95.39092 * 7 5 3 9 9 H 1.48503 * 109.47250 * 215.38982 * 7 5 3 10 10 H 1.48501 * 109.46912 * 335.38819 * 7 5 3 11 11 C 1.46497 * 120.00151 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.42943 * 178.92605 * 11 2 1 13 13 C 1.54960 * 110.48150 * 301.45526 * 11 2 1 14 14 C 1.55089 * 102.86824 * 156.32640 * 13 11 2 15 15 C 1.53479 * 103.95573 * 322.77314 * 14 13 11 16 16 C 1.53104 * 115.22268 * 252.75829 * 15 14 13 17 17 N 1.47737 * 85.84207 * 220.17314 * 16 15 14 18 18 C 1.34779 * 134.41817 * 204.03388 * 17 16 15 19 19 O 1.21507 * 120.00131 * 179.97438 * 18 17 16 20 20 O 1.34635 * 119.99463 * 359.96594 * 18 17 16 21 21 C 1.45202 * 116.99741 * 180.02562 * 20 18 17 22 22 C 1.52992 * 109.47229 * 60.00156 * 21 20 18 23 23 C 1.53001 * 109.47097 * 180.02562 * 21 20 18 24 24 C 1.53001 * 109.46930 * 299.99942 * 21 20 18 25 25 C 1.47749 * 91.17013 * 24.01158 * 17 16 15 26 26 C 1.53079 * 107.49302 * 23.06568 * 15 14 13 27 27 H 1.08999 * 109.47021 * 274.80361 * 1 2 3 28 28 H 1.09003 * 109.47168 * 34.80342 * 1 2 3 29 29 H 1.08997 * 109.47229 * 154.80458 * 1 2 3 30 30 H 0.97008 * 120.00094 * 179.97438 * 6 5 3 31 31 H 1.08996 * 110.72871 * 37.98422 * 13 11 2 32 32 H 1.08999 * 110.73505 * 274.66889 * 13 11 2 33 33 H 1.09001 * 110.52987 * 204.15629 * 14 13 11 34 34 H 1.08992 * 110.65033 * 81.44669 * 14 13 11 35 35 H 1.08997 * 113.81408 * 334.40785 * 16 15 14 36 36 H 1.09001 * 113.80896 * 105.93871 * 16 15 14 37 37 H 1.08994 * 109.47327 * 60.00026 * 22 21 20 38 38 H 1.09001 * 109.47134 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47056 * 300.00235 * 22 21 20 40 40 H 1.09000 * 109.47125 * 59.99708 * 23 21 20 41 41 H 1.09001 * 109.47188 * 179.97438 * 23 21 20 42 42 H 1.09006 * 109.47109 * 300.00065 * 23 21 20 43 43 H 1.08994 * 109.47287 * 60.00375 * 24 21 20 44 44 H 1.09001 * 109.46934 * 180.02562 * 24 21 20 45 45 H 1.09000 * 109.47602 * 299.99853 * 24 21 20 46 46 H 1.09002 * 113.81102 * 221.75664 * 25 17 16 47 47 H 1.08998 * 113.81372 * 90.21888 * 25 17 16 48 48 H 1.09000 * 110.10075 * 119.44219 * 26 15 14 49 49 H 1.09000 * 110.10345 * 241.04896 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0972 1.2625 0.5124 5 6 1.6258 2.2898 -0.6587 6 7 1.9598 3.5041 -0.2763 7 14 0.4469 2.0518 -2.0880 8 1 -0.9515 2.1365 -1.5956 9 1 0.6793 3.1107 -3.1030 10 1 0.6758 0.7191 -2.7019 11 6 2.1975 -1.2687 0.0006 12 1 3.2722 -1.0875 -0.0187 13 6 1.8126 -2.1165 1.2393 14 6 2.1459 -3.5616 0.7858 15 6 1.7495 -3.5851 -0.6967 16 6 0.4774 -4.3736 -1.0195 17 7 1.2049 -4.8504 -2.2137 18 6 0.8316 -5.3246 -3.4188 19 8 1.6744 -5.6506 -4.2311 20 8 -0.4752 -5.4373 -3.7224 21 6 -0.8039 -5.9561 -5.0381 22 6 -0.2236 -7.3634 -5.1910 23 6 -2.3244 -6.0106 -5.1996 24 6 -0.2101 -5.0403 -6.1104 25 6 2.5054 -4.5990 -1.5591 26 6 1.7748 -2.1406 -1.2027 27 1 -0.3633 0.0861 1.0240 28 1 -0.3634 0.8438 -0.5866 29 1 -0.3633 -0.9299 -0.4375 30 1 1.5939 4.2755 -0.7369 31 1 0.7499 -2.0167 1.4599 32 1 2.4153 -1.8342 2.1025 33 1 1.5573 -4.2848 1.3504 34 1 3.2107 -3.7644 0.9000 35 1 0.2519 -5.1594 -0.2986 36 1 -0.3831 -3.7455 -1.2500 37 1 -0.6465 -8.0158 -4.4272 38 1 -0.4707 -7.7531 -6.1785 39 1 0.8596 -7.3242 -5.0761 40 1 -2.7375 -5.0078 -5.0908 41 1 -2.5711 -6.3997 -6.1875 42 1 -2.7478 -6.6628 -4.4357 43 1 0.8730 -5.0011 -5.9955 44 1 -0.4573 -5.4295 -7.0981 45 1 -0.6236 -4.0377 -6.0015 46 1 3.2494 -4.1494 -2.2166 47 1 2.8892 -5.4526 -1.0003 48 1 2.4988 -2.0396 -2.0113 49 1 0.7835 -1.8472 -1.5481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254781693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:38 Heat of formation + Delta-G solvation = -19.357956 kcal Electronic energy + Delta-G solvation = -27345.513520 eV Core-core repulsion = 23695.931648 eV Total energy + Delta-G solvation = -3649.581872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.07601 -39.96892 -37.16686 -36.25644 -34.23092 -33.69390 -31.35243 -29.06456 -28.06364 -27.60919 -27.54009 -26.51869 -26.14015 -24.78380 -22.51190 -21.57617 -19.47616 -19.31587 -18.33690 -17.73476 -16.95924 -16.72554 -16.34617 -15.72527 -15.30670 -15.03776 -14.67184 -14.51351 -14.20309 -13.92738 -13.50743 -13.13517 -12.97931 -12.80668 -12.68749 -12.42176 -12.33276 -12.17507 -12.08069 -12.04674 -11.81283 -11.66198 -11.61297 -11.51184 -10.98414 -10.82683 -10.70380 -10.68013 -10.51102 -10.47560 -10.24765 -10.01395 -9.95554 -9.81791 -9.52677 -8.79828 -8.46574 -6.86130 -6.00553 -3.34890 1.94714 2.84940 3.31651 3.48411 3.53323 3.65864 4.25975 4.53073 4.53784 4.57484 4.67740 4.72020 4.81580 4.97320 5.11976 5.23902 5.25871 5.31812 5.34594 5.36994 5.41472 5.47933 5.54481 5.57779 5.60671 5.67907 5.70805 5.76277 5.81390 5.89227 5.98188 6.09492 6.11151 6.16496 6.18645 6.20989 6.23807 6.42679 6.45687 6.47750 6.55811 6.74165 6.83352 6.93961 7.65057 8.02537 8.31495 8.36229 8.98633 9.72489 10.12102 11.15486 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.003913 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.620042 B = 7154.611073 C = 8264.649652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.601 5.601 3 C -0.269 4.269 4 H 0.081 0.919 5 C 0.034 3.966 6 N -0.898 5.898 7 Si 0.879 3.121 8 H -0.287 1.287 9 H -0.304 1.304 10 H -0.272 1.272 11 C 0.176 3.824 12 H 0.077 0.923 13 C -0.137 4.137 14 C -0.106 4.106 15 C -0.093 4.093 16 C 0.118 3.882 17 N -0.629 5.629 18 C 0.672 3.328 19 O -0.574 6.574 20 O -0.362 6.362 21 C 0.135 3.865 22 C -0.182 4.182 23 C -0.140 4.140 24 C -0.184 4.184 25 C 0.142 3.858 26 C -0.120 4.120 27 H 0.018 0.982 28 H 0.037 0.963 29 H 0.034 0.966 30 H 0.263 0.737 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.063 0.937 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.451 -21.596 -4.376 22.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.323 5.323 3 C -0.398 4.398 4 H 0.099 0.901 5 C -0.167 4.167 6 N -0.539 5.539 7 Si 0.710 3.290 8 H -0.216 1.216 9 H -0.232 1.232 10 H -0.197 1.197 11 C 0.068 3.932 12 H 0.095 0.905 13 C -0.176 4.176 14 C -0.145 4.145 15 C -0.094 4.094 16 C -0.004 4.004 17 N -0.371 5.371 18 C 0.429 3.571 19 O -0.464 6.464 20 O -0.277 6.277 21 C 0.098 3.902 22 C -0.239 4.239 23 C -0.197 4.197 24 C -0.241 4.241 25 C 0.021 3.979 26 C -0.160 4.160 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.082 0.918 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.323 -21.580 -4.929 22.767 hybrid contribution -0.842 -0.101 -1.085 1.377 sum -6.164 -21.682 -6.014 23.330 Atomic orbital electron populations 1.21262 0.85055 0.98473 0.98479 1.44103 1.00431 1.01777 1.86000 1.18814 1.06577 0.85943 1.28422 0.90140 1.25362 0.98195 0.95080 0.98015 1.69914 1.46325 0.97589 1.40071 0.86947 0.80301 0.77384 0.84368 1.21580 1.23208 1.19671 1.21377 0.96350 0.85035 0.90431 0.90482 1.23004 1.01530 0.93450 0.99662 1.22163 1.01268 0.98349 0.92676 1.22491 0.94783 0.95842 0.96318 1.23366 0.96912 0.95919 0.84227 1.48773 1.11259 1.65847 1.11247 1.17551 0.81365 0.76322 0.81900 1.90875 1.52211 1.54999 1.48296 1.86318 1.24945 1.79129 1.37317 1.22048 0.95555 0.93655 0.78917 1.22501 1.04276 0.94847 1.02265 1.21853 0.91912 1.03372 1.02592 1.22524 1.04351 0.99372 0.97902 1.23311 0.86063 0.96687 0.91804 1.22557 1.02601 0.90670 1.00155 0.96406 0.94520 0.94735 0.92743 0.91600 0.91702 0.91684 0.90946 0.89632 0.89801 0.92333 0.91235 0.89435 0.91401 0.90211 0.91564 0.89356 0.91251 0.92069 0.89555 0.89544 0.91779 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.39 8.41 59.85 0.50 2.89 16 2 N -0.60 -13.79 2.54 -171.41 -0.44 -14.23 16 3 C -0.27 -7.41 9.87 -15.06 -0.15 -7.56 16 4 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 5 C 0.03 0.97 5.29 -17.43 -0.09 0.88 16 6 N -0.90 -27.35 13.97 55.49 0.78 -26.58 16 7 Si 0.88 22.44 25.09 -169.99 -4.26 18.17 16 8 H -0.29 -7.13 6.64 56.52 0.38 -6.76 16 9 H -0.30 -7.91 7.11 56.52 0.40 -7.50 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 11 C 0.18 3.21 3.36 -66.11 -0.22 2.99 16 12 H 0.08 1.46 7.94 -51.93 -0.41 1.04 16 13 C -0.14 -1.99 6.46 -24.59 -0.16 -2.15 16 14 C -0.11 -1.16 6.21 -25.38 -0.16 -1.32 16 15 C -0.09 -1.13 1.15 -154.26 -0.18 -1.31 16 16 C 0.12 1.37 8.08 -3.31 -0.03 1.35 16 17 N -0.63 -8.60 3.60 -188.33 -0.68 -9.28 16 18 C 0.67 10.36 8.22 54.06 0.44 10.81 16 19 O -0.57 -9.82 12.61 -19.28 -0.24 -10.06 16 20 O -0.36 -5.12 9.87 -40.31 -0.40 -5.52 16 21 C 0.14 1.55 1.13 -90.62 -0.10 1.45 16 22 C -0.18 -1.91 8.37 37.15 0.31 -1.60 16 23 C -0.14 -1.21 8.85 37.16 0.33 -0.88 16 24 C -0.18 -2.16 8.37 37.16 0.31 -1.85 16 25 C 0.14 1.67 8.07 -3.32 -0.03 1.64 16 26 C -0.12 -1.95 5.85 -25.91 -0.15 -2.11 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.04 0.87 2.77 -51.93 -0.14 0.72 16 29 H 0.03 0.63 6.32 -51.93 -0.33 0.31 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.07 0.99 7.26 -51.93 -0.38 0.61 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.60 7.80 -51.93 -0.40 0.19 16 34 H 0.07 0.72 8.11 -51.93 -0.42 0.29 16 35 H 0.09 0.80 7.93 -51.93 -0.41 0.39 16 36 H 0.08 1.03 7.85 -51.93 -0.41 0.62 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 1.25 5.88 -51.93 -0.31 0.95 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 1.08 7.86 -51.93 -0.41 0.67 16 47 H 0.09 0.82 8.13 -51.93 -0.42 0.40 16 48 H 0.06 1.09 7.73 -51.93 -0.40 0.69 16 49 H 0.07 1.25 5.77 -51.93 -0.30 0.95 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -32.35 373.11 -7.43 -39.78 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.44 Total: -1.14 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 0.63 Total: 3.23 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.34 Total: -50.08 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.64 Total: -15.58 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.26 Total: 18.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.35 -7.43 -39.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254781693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.421 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds