Wall clock time and date at job start Tue Mar 31 2020 09:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 120.00136 * 2 1 4 4 H 1.07992 * 120.00734 * 146.77595 * 3 2 1 5 5 C 1.38810 * 119.99735 * 326.77281 * 3 2 1 6 6 N 1.31618 * 120.00078 * 154.30645 * 5 3 2 7 7 Si 1.86800 * 120.00093 * 334.30759 * 5 3 2 8 8 H 1.48501 * 109.47193 * 95.39092 * 7 5 3 9 9 H 1.48503 * 109.47250 * 215.38982 * 7 5 3 10 10 H 1.48501 * 109.46912 * 335.38819 * 7 5 3 11 11 C 1.46497 * 120.00151 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.42943 * 178.92605 * 11 2 1 13 13 C 1.54960 * 110.48150 * 301.45526 * 11 2 1 14 14 C 1.55089 * 102.86824 * 156.32640 * 13 11 2 15 15 C 1.53479 * 103.95573 * 322.77314 * 14 13 11 16 16 C 1.53104 * 115.22268 * 252.75829 * 15 14 13 17 17 N 1.47737 * 85.84207 * 220.17314 * 16 15 14 18 18 C 1.34779 * 134.41817 * 204.03388 * 17 16 15 19 19 O 1.21507 * 120.00131 * 179.97438 * 18 17 16 20 20 O 1.34635 * 119.99463 * 359.96594 * 18 17 16 21 21 C 1.45202 * 116.99741 * 180.02562 * 20 18 17 22 22 C 1.52992 * 109.47229 * 60.00156 * 21 20 18 23 23 C 1.53001 * 109.47097 * 180.02562 * 21 20 18 24 24 C 1.53001 * 109.46930 * 299.99942 * 21 20 18 25 25 C 1.47749 * 91.17013 * 24.01158 * 17 16 15 26 26 C 1.53079 * 107.49302 * 23.06568 * 15 14 13 27 27 H 1.08999 * 109.47021 * 274.80361 * 1 2 3 28 28 H 1.09003 * 109.47168 * 34.80342 * 1 2 3 29 29 H 1.08997 * 109.47229 * 154.80458 * 1 2 3 30 30 H 0.97008 * 120.00094 * 179.97438 * 6 5 3 31 31 H 1.08996 * 110.72871 * 37.98422 * 13 11 2 32 32 H 1.08999 * 110.73505 * 274.66889 * 13 11 2 33 33 H 1.09001 * 110.52987 * 204.15629 * 14 13 11 34 34 H 1.08992 * 110.65033 * 81.44669 * 14 13 11 35 35 H 1.08997 * 113.81408 * 334.40785 * 16 15 14 36 36 H 1.09001 * 113.80896 * 105.93871 * 16 15 14 37 37 H 1.08994 * 109.47327 * 60.00026 * 22 21 20 38 38 H 1.09001 * 109.47134 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47056 * 300.00235 * 22 21 20 40 40 H 1.09000 * 109.47125 * 59.99708 * 23 21 20 41 41 H 1.09001 * 109.47188 * 179.97438 * 23 21 20 42 42 H 1.09006 * 109.47109 * 300.00065 * 23 21 20 43 43 H 1.08994 * 109.47287 * 60.00375 * 24 21 20 44 44 H 1.09001 * 109.46934 * 180.02562 * 24 21 20 45 45 H 1.09000 * 109.47602 * 299.99853 * 24 21 20 46 46 H 1.09002 * 113.81102 * 221.75664 * 25 17 16 47 47 H 1.08998 * 113.81372 * 90.21888 * 25 17 16 48 48 H 1.09000 * 110.10075 * 119.44219 * 26 15 14 49 49 H 1.09000 * 110.10345 * 241.04896 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0972 1.2625 0.5124 5 6 1.6258 2.2898 -0.6587 6 7 1.9598 3.5041 -0.2763 7 14 0.4469 2.0518 -2.0880 8 1 -0.9515 2.1365 -1.5956 9 1 0.6793 3.1107 -3.1030 10 1 0.6758 0.7191 -2.7019 11 6 2.1975 -1.2687 0.0006 12 1 3.2722 -1.0875 -0.0187 13 6 1.8126 -2.1165 1.2393 14 6 2.1459 -3.5616 0.7858 15 6 1.7495 -3.5851 -0.6967 16 6 0.4774 -4.3736 -1.0195 17 7 1.2049 -4.8504 -2.2137 18 6 0.8316 -5.3246 -3.4188 19 8 1.6744 -5.6506 -4.2311 20 8 -0.4752 -5.4373 -3.7224 21 6 -0.8039 -5.9561 -5.0381 22 6 -0.2236 -7.3634 -5.1910 23 6 -2.3244 -6.0106 -5.1996 24 6 -0.2101 -5.0403 -6.1104 25 6 2.5054 -4.5990 -1.5591 26 6 1.7748 -2.1406 -1.2027 27 1 -0.3633 0.0861 1.0240 28 1 -0.3634 0.8438 -0.5866 29 1 -0.3633 -0.9299 -0.4375 30 1 1.5939 4.2755 -0.7369 31 1 0.7499 -2.0167 1.4599 32 1 2.4153 -1.8342 2.1025 33 1 1.5573 -4.2848 1.3504 34 1 3.2107 -3.7644 0.9000 35 1 0.2519 -5.1594 -0.2986 36 1 -0.3831 -3.7455 -1.2500 37 1 -0.6465 -8.0158 -4.4272 38 1 -0.4707 -7.7531 -6.1785 39 1 0.8596 -7.3242 -5.0761 40 1 -2.7375 -5.0078 -5.0908 41 1 -2.5711 -6.3997 -6.1875 42 1 -2.7478 -6.6628 -4.4357 43 1 0.8730 -5.0011 -5.9955 44 1 -0.4573 -5.4295 -7.0981 45 1 -0.6236 -4.0377 -6.0015 46 1 3.2494 -4.1494 -2.2166 47 1 2.8892 -5.4526 -1.0003 48 1 2.4988 -2.0396 -2.0113 49 1 0.7835 -1.8472 -1.5481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254781693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:37 Heat of formation + Delta-G solvation = -39.527191 kcal Electronic energy + Delta-G solvation = -27346.388123 eV Core-core repulsion = 23695.931648 eV Total energy + Delta-G solvation = -3650.456475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11523 -41.01445 -38.46657 -37.53242 -35.49854 -34.92586 -33.31640 -30.20830 -29.35581 -28.41007 -28.33481 -28.07813 -27.35106 -26.17746 -24.09652 -22.57082 -20.76366 -20.45882 -19.40593 -18.94670 -18.75795 -17.76062 -17.52217 -17.38097 -16.53014 -16.17191 -16.00939 -15.62702 -15.16390 -15.04430 -14.77253 -14.56156 -14.40122 -14.22359 -14.11059 -13.71072 -13.38224 -13.36058 -13.16358 -12.95563 -12.90059 -12.72363 -12.60420 -12.55518 -12.48701 -12.32492 -12.18112 -12.02933 -11.96488 -11.71161 -11.53050 -11.42385 -11.24573 -11.24004 -10.99851 -10.58988 -9.80602 -8.77447 -8.22409 -5.51249 0.99264 1.25933 1.38403 1.48265 1.74562 2.39641 2.73038 3.02947 3.22439 3.39914 3.70887 3.73272 3.76799 3.82520 3.91295 4.08723 4.25304 4.42665 4.47104 4.51417 4.53281 4.56612 4.58200 4.59969 4.65844 4.70724 4.71776 4.72762 4.79129 4.83544 4.84123 4.88550 4.99826 5.01063 5.08348 5.13148 5.14945 5.23541 5.28726 5.29756 5.33445 5.47563 5.54418 5.58987 5.92311 6.16795 6.61457 6.98849 7.23168 7.66643 8.07265 8.98273 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.003913 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.620042 B = 7154.611073 C = 8264.649652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.615 5.615 3 C -0.256 4.256 4 H 0.048 0.952 5 C -0.022 4.022 6 N -0.947 5.947 7 Si 0.942 3.058 8 H -0.274 1.274 9 H -0.313 1.313 10 H -0.269 1.269 11 C 0.164 3.836 12 H 0.060 0.940 13 C -0.129 4.129 14 C -0.089 4.089 15 C -0.084 4.084 16 C 0.123 3.877 17 N -0.638 5.638 18 C 0.662 3.338 19 O -0.600 6.600 20 O -0.370 6.370 21 C 0.122 3.878 22 C -0.175 4.175 23 C -0.134 4.134 24 C -0.181 4.181 25 C 0.143 3.857 26 C -0.113 4.113 27 H 0.026 0.974 28 H 0.015 0.985 29 H 0.066 0.934 30 H 0.262 0.738 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.072 0.928 47 H 0.121 0.879 48 H 0.046 0.954 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 -24.982 -4.157 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.338 5.338 3 C -0.386 4.386 4 H 0.065 0.935 5 C -0.218 4.218 6 N -0.591 5.591 7 Si 0.772 3.228 8 H -0.201 1.201 9 H -0.242 1.242 10 H -0.194 1.194 11 C 0.058 3.942 12 H 0.078 0.922 13 C -0.168 4.168 14 C -0.127 4.127 15 C -0.085 4.085 16 C 0.002 3.998 17 N -0.380 5.380 18 C 0.419 3.581 19 O -0.493 6.493 20 O -0.285 6.285 21 C 0.086 3.914 22 C -0.232 4.232 23 C -0.191 4.191 24 C -0.239 4.239 25 C 0.023 3.977 26 C -0.152 4.152 27 H 0.044 0.956 28 H 0.033 0.967 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.140 0.860 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.139 0.861 48 H 0.065 0.935 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.151 -25.017 -4.691 26.438 hybrid contribution -0.204 0.929 -1.115 1.465 sum -7.356 -24.088 -5.805 25.846 Atomic orbital electron populations 1.21293 0.83943 0.99156 0.98856 1.44237 1.01300 1.01920 1.86365 1.18778 1.05393 0.87799 1.26583 0.93450 1.25918 1.00825 0.94815 1.00279 1.70024 1.49044 0.98408 1.41649 0.85916 0.79115 0.76761 0.80968 1.20145 1.24198 1.19360 1.21605 0.95153 0.83971 0.93515 0.92177 1.22872 1.01435 0.95065 0.97424 1.22125 1.03010 0.96319 0.91287 1.22264 0.95966 0.93184 0.97120 1.23544 0.95930 0.96492 0.83839 1.49020 1.12458 1.65204 1.11305 1.17810 0.81588 0.76447 0.82250 1.90861 1.52933 1.56240 1.49235 1.86320 1.24197 1.79231 1.38711 1.22435 0.97434 0.93799 0.77753 1.22432 1.02346 0.94552 1.03902 1.21877 0.89433 1.03505 1.04322 1.22488 1.02312 0.99410 0.99645 1.23467 0.85340 0.97542 0.91375 1.22345 1.00882 0.93380 0.98617 0.95588 0.96659 0.91563 0.92899 0.91531 0.91985 0.88180 0.89315 0.86045 0.90516 0.91634 0.88905 0.92186 0.91840 0.87721 0.90833 0.92300 0.88717 0.92863 0.90987 0.86150 0.93528 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.62 8.41 127.77 1.07 5.69 16 2 N -0.62 -28.18 2.54 -696.23 -1.77 -29.95 16 3 C -0.26 -14.47 9.87 84.03 0.83 -13.64 16 4 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 5 C -0.02 -1.30 5.29 84.86 0.45 -0.85 16 6 N -0.95 -59.67 13.97 21.65 0.30 -59.36 16 7 Si 0.94 47.48 25.09 68.60 1.72 49.20 16 8 H -0.27 -13.08 6.64 99.48 0.66 -12.42 16 9 H -0.31 -16.08 7.11 99.48 0.71 -15.37 16 10 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 11 C 0.16 5.87 3.36 46.17 0.15 6.02 16 12 H 0.06 2.32 7.94 -2.39 -0.02 2.30 16 13 C -0.13 -3.41 6.46 31.98 0.21 -3.21 16 14 C -0.09 -1.55 6.21 31.47 0.20 -1.36 16 15 C -0.08 -1.79 1.15 -51.89 -0.06 -1.85 16 16 C 0.12 2.41 8.08 86.17 0.70 3.11 16 17 N -0.64 -16.07 3.60 -980.14 -3.53 -19.60 16 18 C 0.66 19.82 8.22 129.79 1.07 20.89 16 19 O -0.60 -20.63 12.61 19.82 0.25 -20.38 16 20 O -0.37 -9.98 9.87 -55.44 -0.55 -10.53 16 21 C 0.12 2.61 1.13 -10.80 -0.01 2.59 16 22 C -0.18 -3.40 8.37 71.98 0.60 -2.79 16 23 C -0.13 -1.96 8.85 71.98 0.64 -1.32 16 24 C -0.18 -4.11 8.37 71.98 0.60 -3.51 16 25 C 0.14 2.98 8.07 86.16 0.70 3.67 16 26 C -0.11 -3.55 5.85 31.13 0.18 -3.36 16 27 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.02 0.70 2.77 -2.39 -0.01 0.70 16 29 H 0.07 2.29 6.32 -2.39 -0.02 2.28 16 30 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 31 H 0.07 1.78 7.26 -2.39 -0.02 1.76 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.10 1.18 7.80 -2.39 -0.02 1.17 16 34 H 0.09 1.34 8.11 -2.39 -0.02 1.32 16 35 H 0.12 1.59 7.93 -2.39 -0.02 1.57 16 36 H 0.08 1.64 7.85 -2.39 -0.02 1.62 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 1.53 5.88 -2.39 -0.01 1.51 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.06 1.70 5.88 -2.39 -0.01 1.69 16 44 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.07 1.72 7.86 -2.39 -0.02 1.70 16 47 H 0.12 1.76 8.13 -2.39 -0.02 1.74 16 48 H 0.05 1.60 7.73 -2.39 -0.02 1.58 16 49 H 0.05 1.85 5.77 -2.39 -0.01 1.84 16 Total: -1.00 -74.08 373.11 4.62 -69.46 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.87 Total: 11.09 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 7.32 Total: 10.09 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -5.00 Total: -108.92 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.30 Total: -30.91 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.72 Total: 49.20 kcal Total: -74.08 4.62 -69.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254781693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.930 kcal (2) G-P(sol) polarization free energy of solvation -74.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds