Wall clock time and date at job start Tue Mar 31 2020 09:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47281 * 2 1 4 4 C 1.53002 * 109.47259 * 239.99297 * 2 1 3 5 5 O 1.45202 * 109.46910 * 119.99517 * 2 1 3 6 6 C 1.34643 * 116.99654 * 60.00269 * 5 2 1 7 7 O 1.21503 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99519 * 180.02562 * 6 5 2 9 9 C 1.46933 * 120.63005 * 179.97438 * 8 6 5 10 10 C 1.53184 * 108.77781 * 233.63192 * 9 8 6 11 11 C 1.53045 * 109.31176 * 305.36300 * 10 9 8 12 12 N 1.46898 * 109.46035 * 181.38433 * 11 10 9 13 13 C 1.47484 * 110.99795 * 164.85068 * 12 11 10 14 14 C 1.53519 * 87.93025 * 221.29909 * 13 12 11 15 15 C 1.50699 * 114.16764 * 139.67224 * 14 13 12 16 16 H 1.07993 * 120.00417 * 266.15417 * 15 14 13 17 17 C 1.37881 * 119.99848 * 86.15879 * 15 14 13 18 18 N 1.31516 * 120.00164 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47238 * 0.02562 * 19 17 15 21 21 H 1.48511 * 109.46870 * 120.00059 * 19 17 15 22 22 H 1.48501 * 109.47588 * 239.99907 * 19 17 15 23 23 C 1.47482 * 111.00066 * 68.88236 * 12 11 10 24 24 C 1.53042 * 109.53737 * 61.36400 * 11 10 9 25 25 C 1.46921 * 120.63488 * 0.02562 * 8 6 5 26 26 H 1.08998 * 109.47060 * 300.00568 * 1 2 3 27 27 H 1.09005 * 109.46580 * 60.00214 * 1 2 3 28 28 H 1.09002 * 109.46996 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46849 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46858 * 299.99777 * 3 2 1 31 31 H 1.08993 * 109.47405 * 59.99246 * 3 2 1 32 32 H 1.08996 * 109.47153 * 300.00432 * 4 2 1 33 33 H 1.08999 * 109.46793 * 60.00276 * 4 2 1 34 34 H 1.09001 * 109.46689 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.58413 * 113.83969 * 9 8 6 36 36 H 1.09003 * 109.58140 * 353.41770 * 9 8 6 37 37 H 1.08996 * 109.50044 * 185.41566 * 10 9 8 38 38 H 1.09004 * 109.50256 * 65.31025 * 10 9 8 39 39 H 1.08997 * 109.45727 * 301.35729 * 11 10 9 40 40 H 1.08995 * 113.47617 * 336.06072 * 13 12 11 41 41 H 1.08997 * 113.47383 * 106.53684 * 13 12 11 42 42 H 1.09002 * 114.34263 * 272.36249 * 14 13 12 43 43 H 0.97004 * 119.99954 * 180.02562 * 18 17 15 44 44 H 1.08997 * 113.47489 * 253.47134 * 23 12 11 45 45 H 1.09007 * 113.47554 * 23.93559 * 23 12 11 46 46 H 1.09006 * 109.49630 * 58.58932 * 24 11 10 47 47 H 1.08996 * 109.49762 * 178.68072 * 24 11 10 48 48 H 1.08998 * 109.58793 * 246.15888 * 25 8 6 49 49 H 1.08998 * 109.58607 * 6.57925 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5042 8 7 2.0671 -2.6653 2.4173 9 6 1.6802 -4.0711 2.5983 10 6 1.0385 -4.2320 3.9800 11 6 1.9975 -3.7016 5.0482 12 7 1.3993 -3.8847 6.3773 13 6 2.4114 -3.7283 7.4386 14 6 1.7682 -4.9262 8.1514 15 6 2.7574 -5.8781 8.7730 16 1 3.0938 -6.7436 8.2215 17 6 3.2330 -5.6442 10.0459 18 7 2.8230 -4.5906 10.7177 19 14 4.4586 -6.8245 10.8166 20 1 4.7566 -7.9221 9.8617 21 1 5.7118 -6.0959 11.1393 22 1 3.8824 -7.3936 12.0613 23 6 1.3286 -5.3142 6.7328 24 6 2.2591 -2.2130 4.8075 25 6 2.9140 -2.0291 3.4355 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8898 32 1 1.6767 -1.7490 -1.2491 33 1 1.6768 -0.2076 -2.1392 34 1 3.1301 -0.7218 -1.2488 35 1 2.5642 -4.7051 2.5298 36 1 0.9637 -4.3550 1.8274 37 1 0.8343 -5.2864 4.1658 38 1 0.1062 -3.6685 4.0161 39 1 2.9387 -4.2488 4.9952 40 1 3.4293 -3.9203 7.0995 41 1 2.3198 -2.7936 7.9917 42 1 0.9461 -4.6642 8.8175 43 1 3.1579 -4.4258 11.6131 44 1 0.3194 -5.7235 6.6876 45 1 2.0577 -5.9294 6.2053 46 1 1.3152 -1.6685 4.8357 47 1 2.9236 -1.8305 5.5822 48 1 3.8989 -2.4962 3.4354 49 1 3.0118 -0.9657 3.2170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256291150.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:25 Heat of formation + Delta-G solvation = -51.380073 kcal Electronic energy + Delta-G solvation = -26826.344917 eV Core-core repulsion = 23175.374462 eV Total energy + Delta-G solvation = -3650.970455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.99782 -39.57738 -37.99141 -36.36244 -34.30426 -33.03134 -31.92226 -31.14697 -27.88527 -27.64423 -27.59007 -25.27926 -25.05027 -23.32495 -22.87820 -21.62056 -20.19382 -19.24562 -18.65454 -17.98927 -16.81751 -16.56873 -16.27800 -15.38838 -15.11478 -14.69771 -14.62190 -14.49588 -14.14367 -14.00376 -13.92151 -13.60475 -13.22670 -12.83646 -12.63946 -12.41087 -12.33612 -12.11945 -12.06632 -12.02313 -11.70445 -11.54729 -11.47155 -11.40531 -11.13220 -11.11288 -10.95510 -10.63654 -10.53675 -10.49946 -10.14234 -10.02180 -9.67058 -9.21467 -8.94047 -8.76295 -8.45686 -8.00420 -6.07754 -4.12166 2.05012 2.76770 3.25808 3.34445 3.37719 3.70289 4.37470 4.48912 4.53264 4.67464 4.68349 4.82714 4.85278 5.06971 5.22073 5.22541 5.28224 5.29417 5.30018 5.42084 5.44674 5.51867 5.56789 5.63079 5.67872 5.71820 5.74909 5.78838 5.87422 6.02768 6.06439 6.07557 6.12692 6.20631 6.32352 6.35944 6.41140 6.52316 6.54856 6.66836 6.75035 7.11863 7.16050 7.30652 7.71107 7.89547 8.07618 8.26224 8.35373 8.91444 9.53024 11.01826 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.033501 B = 0.002556 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.588280 B =10950.478785 C =11167.340772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.363 6.363 6 C 0.654 3.346 7 O -0.574 6.574 8 N -0.591 5.591 9 C 0.129 3.871 10 C -0.125 4.125 11 C 0.051 3.949 12 N -0.480 5.480 13 C 0.007 3.993 14 C 0.041 3.959 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.004 4.004 24 C -0.123 4.123 25 C 0.113 3.887 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.261 0.739 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.779 9.478 -20.798 22.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.409 3.591 7 O -0.464 6.464 8 N -0.332 5.332 9 C 0.008 3.992 10 C -0.163 4.163 11 C -0.059 4.059 12 N -0.203 5.203 13 C -0.122 4.122 14 C 0.022 3.978 15 C -0.554 4.554 16 H 0.076 0.924 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.132 4.132 24 C -0.161 4.161 25 C -0.010 4.010 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.578 9.911 -20.974 23.252 hybrid contribution 1.524 -0.966 0.400 1.848 sum -0.055 8.945 -20.574 22.435 Atomic orbital electron populations 1.22512 0.94021 1.05099 1.02389 1.22049 0.94392 0.91509 0.82227 1.21854 1.02205 0.92614 1.03095 1.22507 1.01462 1.03529 0.96458 1.86303 1.71523 1.23737 1.46179 1.17947 0.78639 0.80444 0.82052 1.90862 1.41638 1.70477 1.43455 1.47036 1.52812 1.12336 1.20982 1.21685 1.00393 0.78746 0.98422 1.21930 0.99440 1.02204 0.92725 1.22131 0.96093 0.95322 0.92307 1.68942 1.35130 1.15747 1.00454 1.23997 0.93488 1.01994 0.92721 1.20093 0.95843 0.92037 0.89841 1.21072 1.24956 1.09359 0.99967 0.92435 1.25022 0.96431 0.95233 0.96961 1.69979 1.43442 1.26927 1.12003 0.86575 0.81134 0.81174 0.79341 1.19735 1.21003 1.20905 1.23964 0.99617 0.89358 1.00303 1.21858 1.01818 0.96975 0.95463 1.21769 0.93185 0.98670 0.87330 0.92138 0.91292 0.89359 0.91511 0.90242 0.91416 0.89385 0.91277 0.92272 0.91186 0.88641 0.90338 0.90893 0.93719 0.92978 0.91871 0.91863 0.92921 0.92150 0.92874 0.90950 0.90360 0.91272 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 8.37 37.16 0.31 -1.49 16 2 C 0.14 1.34 1.13 -90.62 -0.10 1.24 16 3 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 4 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 5 O -0.36 -4.47 8.53 -40.33 -0.34 -4.82 16 6 C 0.65 9.00 7.74 54.05 0.42 9.41 16 7 O -0.57 -8.75 11.29 -19.27 -0.22 -8.97 16 8 N -0.59 -7.63 2.97 -178.59 -0.53 -8.16 16 9 C 0.13 1.60 6.43 -3.71 -0.02 1.57 16 10 C -0.12 -1.71 5.42 -26.61 -0.14 -1.86 16 11 C 0.05 0.80 1.50 -67.67 -0.10 0.70 16 12 N -0.48 -9.23 6.13 -236.54 -1.45 -10.68 16 13 C 0.01 0.15 6.60 -7.54 -0.05 0.10 16 14 C 0.04 1.00 3.77 -91.24 -0.34 0.66 16 15 C -0.52 -13.75 8.82 -34.44 -0.30 -14.05 16 16 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -25.23 13.26 55.43 0.74 -24.50 16 19 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.00 -0.08 6.30 -7.55 -0.05 -0.12 16 24 C -0.12 -1.70 5.49 -26.64 -0.15 -1.84 16 25 C 0.11 1.34 6.44 -3.74 -0.02 1.32 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 1.08 5.88 -51.93 -0.31 0.78 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.04 5.88 -51.93 -0.31 0.73 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.20 7.00 -51.93 -0.36 0.84 16 37 H 0.08 1.06 7.45 -51.93 -0.39 0.68 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.04 0.73 7.56 -51.93 -0.39 0.34 16 40 H 0.05 1.15 7.64 -51.93 -0.40 0.75 16 41 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.06 1.71 8.11 -51.93 -0.42 1.29 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.05 1.06 7.74 -51.93 -0.40 0.65 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.08 1.11 7.68 -51.93 -0.40 0.71 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.09 1.00 6.93 -51.93 -0.36 0.64 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -29.15 377.57 -9.93 -39.08 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.77 Total: 1.38 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -0.02 Total: -4.77 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -1.25 Total: -43.34 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.56 Total: -13.78 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.15 -9.93 -39.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256291150.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.300 kcal (2) G-P(sol) polarization free energy of solvation -29.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds