Wall clock time and date at job start Tue Mar 31 2020 09:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47281 * 2 1 4 4 C 1.53002 * 109.47259 * 239.99297 * 2 1 3 5 5 O 1.45202 * 109.46910 * 119.99517 * 2 1 3 6 6 C 1.34643 * 116.99654 * 60.00269 * 5 2 1 7 7 O 1.21503 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99519 * 180.02562 * 6 5 2 9 9 C 1.46933 * 120.63005 * 179.97438 * 8 6 5 10 10 C 1.53184 * 108.77781 * 233.63192 * 9 8 6 11 11 C 1.53045 * 109.31176 * 305.36300 * 10 9 8 12 12 N 1.46898 * 109.46035 * 181.38433 * 11 10 9 13 13 C 1.47484 * 110.99795 * 164.85068 * 12 11 10 14 14 C 1.53519 * 87.93025 * 221.29909 * 13 12 11 15 15 C 1.50699 * 114.16764 * 139.67224 * 14 13 12 16 16 H 1.07993 * 120.00417 * 266.15417 * 15 14 13 17 17 C 1.37881 * 119.99848 * 86.15879 * 15 14 13 18 18 N 1.31516 * 120.00164 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47238 * 0.02562 * 19 17 15 21 21 H 1.48511 * 109.46870 * 120.00059 * 19 17 15 22 22 H 1.48501 * 109.47588 * 239.99907 * 19 17 15 23 23 C 1.47482 * 111.00066 * 68.88236 * 12 11 10 24 24 C 1.53042 * 109.53737 * 61.36400 * 11 10 9 25 25 C 1.46921 * 120.63488 * 0.02562 * 8 6 5 26 26 H 1.08998 * 109.47060 * 300.00568 * 1 2 3 27 27 H 1.09005 * 109.46580 * 60.00214 * 1 2 3 28 28 H 1.09002 * 109.46996 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46849 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46858 * 299.99777 * 3 2 1 31 31 H 1.08993 * 109.47405 * 59.99246 * 3 2 1 32 32 H 1.08996 * 109.47153 * 300.00432 * 4 2 1 33 33 H 1.08999 * 109.46793 * 60.00276 * 4 2 1 34 34 H 1.09001 * 109.46689 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.58413 * 113.83969 * 9 8 6 36 36 H 1.09003 * 109.58140 * 353.41770 * 9 8 6 37 37 H 1.08996 * 109.50044 * 185.41566 * 10 9 8 38 38 H 1.09004 * 109.50256 * 65.31025 * 10 9 8 39 39 H 1.08997 * 109.45727 * 301.35729 * 11 10 9 40 40 H 1.08995 * 113.47617 * 336.06072 * 13 12 11 41 41 H 1.08997 * 113.47383 * 106.53684 * 13 12 11 42 42 H 1.09002 * 114.34263 * 272.36249 * 14 13 12 43 43 H 0.97004 * 119.99954 * 180.02562 * 18 17 15 44 44 H 1.08997 * 113.47489 * 253.47134 * 23 12 11 45 45 H 1.09007 * 113.47554 * 23.93559 * 23 12 11 46 46 H 1.09006 * 109.49630 * 58.58932 * 24 11 10 47 47 H 1.08996 * 109.49762 * 178.68072 * 24 11 10 48 48 H 1.08998 * 109.58793 * 246.15888 * 25 8 6 49 49 H 1.08998 * 109.58607 * 6.57925 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5042 8 7 2.0671 -2.6653 2.4173 9 6 1.6802 -4.0711 2.5983 10 6 1.0385 -4.2320 3.9800 11 6 1.9975 -3.7016 5.0482 12 7 1.3993 -3.8847 6.3773 13 6 2.4114 -3.7283 7.4386 14 6 1.7682 -4.9262 8.1514 15 6 2.7574 -5.8781 8.7730 16 1 3.0938 -6.7436 8.2215 17 6 3.2330 -5.6442 10.0459 18 7 2.8230 -4.5906 10.7177 19 14 4.4586 -6.8245 10.8166 20 1 4.7566 -7.9221 9.8617 21 1 5.7118 -6.0959 11.1393 22 1 3.8824 -7.3936 12.0613 23 6 1.3286 -5.3142 6.7328 24 6 2.2591 -2.2130 4.8075 25 6 2.9140 -2.0291 3.4355 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8898 32 1 1.6767 -1.7490 -1.2491 33 1 1.6768 -0.2076 -2.1392 34 1 3.1301 -0.7218 -1.2488 35 1 2.5642 -4.7051 2.5298 36 1 0.9637 -4.3550 1.8274 37 1 0.8343 -5.2864 4.1658 38 1 0.1062 -3.6685 4.0161 39 1 2.9387 -4.2488 4.9952 40 1 3.4293 -3.9203 7.0995 41 1 2.3198 -2.7936 7.9917 42 1 0.9461 -4.6642 8.8175 43 1 3.1579 -4.4258 11.6131 44 1 0.3194 -5.7235 6.6876 45 1 2.0577 -5.9294 6.2053 46 1 1.3152 -1.6685 4.8357 47 1 2.9236 -1.8305 5.5822 48 1 3.8989 -2.4962 3.4354 49 1 3.0118 -0.9657 3.2170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256291150.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:24 Heat of formation + Delta-G solvation = -69.151348 kcal Electronic energy + Delta-G solvation = -26827.115537 eV Core-core repulsion = 23175.374462 eV Total energy + Delta-G solvation = -3651.741075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.99784 -41.02623 -39.13070 -37.45356 -35.24672 -34.72050 -33.39428 -32.20990 -29.55692 -28.34050 -28.27310 -26.84327 -26.68539 -24.68736 -24.10171 -22.73799 -21.30652 -20.49488 -20.19716 -19.08782 -18.46900 -17.68806 -17.27949 -16.84075 -16.29834 -16.28076 -15.84480 -15.57226 -15.47639 -15.27629 -15.00823 -14.46472 -14.43632 -14.09544 -13.93673 -13.42997 -13.22846 -13.21304 -13.08105 -12.97438 -12.91177 -12.86881 -12.84313 -12.71917 -12.46135 -12.31926 -12.28039 -12.20351 -12.06852 -11.48177 -11.37161 -11.33172 -11.07797 -10.99623 -10.77696 -10.48460 -9.82706 -9.63871 -8.14308 -6.25263 1.12501 1.42008 1.44366 1.55487 1.73688 2.43059 2.79645 3.15153 3.24114 3.67743 3.76288 3.78440 3.82473 3.97230 4.01152 4.16008 4.25908 4.27717 4.41599 4.47220 4.50236 4.59240 4.62559 4.63715 4.66555 4.73150 4.74997 4.78680 4.82692 4.85645 4.90001 4.93286 4.98700 5.05506 5.11739 5.13752 5.25734 5.30252 5.31131 5.33999 5.42469 5.47834 5.57941 5.64803 5.87193 6.29395 6.31523 6.45387 6.84715 7.25400 7.43343 8.95629 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.033501 B = 0.002556 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.588280 B =10950.478785 C =11167.340772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 C -0.135 4.135 4 C -0.177 4.177 5 O -0.367 6.367 6 C 0.650 3.350 7 O -0.593 6.593 8 N -0.594 5.594 9 C 0.134 3.866 10 C -0.115 4.115 11 C 0.049 3.951 12 N -0.480 5.480 13 C 0.022 3.978 14 C 0.019 3.981 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.014 3.986 18 N -0.923 5.923 19 Si 0.957 3.043 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.282 1.282 23 C 0.013 3.987 24 C -0.116 4.116 25 C 0.121 3.879 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.027 0.973 43 H 0.262 0.738 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 9.706 -22.593 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 C -0.192 4.192 4 C -0.234 4.234 5 O -0.282 6.282 6 C 0.406 3.594 7 O -0.484 6.484 8 N -0.334 5.334 9 C 0.013 3.987 10 C -0.153 4.153 11 C -0.060 4.060 12 N -0.202 5.202 13 C -0.107 4.107 14 C 0.000 4.000 15 C -0.565 4.565 16 H 0.078 0.922 17 C -0.185 4.185 18 N -0.562 5.562 19 Si 0.782 3.218 20 H -0.188 1.188 21 H -0.206 1.206 22 H -0.208 1.208 23 C -0.115 4.115 24 C -0.155 4.155 25 C -0.001 4.001 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.103 0.897 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.464 10.141 -22.786 24.945 hybrid contribution 1.106 -0.995 0.912 1.744 sum 0.642 9.147 -21.874 23.718 Atomic orbital electron populations 1.22468 0.94191 1.03565 1.03424 1.22432 0.94480 0.92787 0.81641 1.21878 1.02465 0.90652 1.04238 1.22452 1.01601 1.02163 0.97232 1.86311 1.71528 1.22956 1.47380 1.18093 0.78426 0.80882 0.82023 1.90861 1.42407 1.70999 1.44168 1.47130 1.52801 1.12505 1.21013 1.21650 1.00984 0.78935 0.97135 1.21830 0.98448 1.02115 0.92929 1.22223 0.96372 0.96762 0.90611 1.68882 1.34532 1.14946 1.01880 1.23689 0.93876 0.99892 0.93266 1.20048 0.95056 0.93538 0.91385 1.21399 1.25088 1.09629 1.00385 0.92248 1.25824 0.98304 0.96796 0.97603 1.70103 1.44942 1.28739 1.12375 0.85532 0.78713 0.79183 0.78377 1.18762 1.20612 1.20767 1.23765 1.00232 0.90151 0.97388 1.21784 1.01444 0.95416 0.96812 1.21756 0.93258 0.99537 0.85586 0.92400 0.88972 0.92066 0.91110 0.87890 0.91487 0.92001 0.89046 0.91938 0.89475 0.88838 0.89861 0.92092 0.93527 0.92959 0.93631 0.95499 0.92901 0.91234 0.91890 0.92033 0.90722 0.89730 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.33 8.37 71.98 0.60 -2.72 16 2 C 0.12 2.23 1.13 -10.79 -0.01 2.22 16 3 C -0.14 -1.61 8.85 71.98 0.64 -0.98 16 4 C -0.18 -3.06 8.37 71.98 0.60 -2.46 16 5 O -0.37 -8.57 8.53 -55.53 -0.47 -9.04 16 6 C 0.65 17.26 7.74 129.79 1.00 18.26 16 7 O -0.59 -17.86 11.29 19.83 0.22 -17.64 16 8 N -0.59 -14.45 2.97 -949.36 -2.82 -17.27 16 9 C 0.13 3.10 6.43 86.36 0.56 3.66 16 10 C -0.11 -3.00 5.42 30.67 0.17 -2.83 16 11 C 0.05 1.48 1.50 44.94 0.07 1.55 16 12 N -0.48 -18.30 6.13 -902.27 -5.53 -23.83 16 13 C 0.02 0.98 6.60 83.58 0.55 1.53 16 14 C 0.02 0.94 3.77 -11.20 -0.04 0.90 16 15 C -0.53 -28.27 8.82 25.60 0.23 -28.05 16 16 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 17 C 0.01 0.76 5.46 84.66 0.46 1.22 16 18 N -0.92 -53.62 13.26 21.45 0.28 -53.34 16 19 Si 0.96 42.61 29.54 68.60 2.03 44.63 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 C 0.01 0.53 6.30 83.57 0.53 1.06 16 24 C -0.12 -3.08 5.49 30.66 0.17 -2.92 16 25 C 0.12 2.64 6.44 86.35 0.56 3.19 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.06 1.49 5.88 -2.39 -0.01 1.48 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.09 2.24 7.00 -2.39 -0.02 2.23 16 37 H 0.08 2.11 7.45 -2.39 -0.02 2.09 16 38 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.05 1.42 7.56 -2.39 -0.02 1.40 16 40 H 0.05 2.30 7.64 -2.39 -0.02 2.28 16 41 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.03 1.52 8.11 -2.39 -0.02 1.50 16 43 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.06 2.41 7.74 -2.38 -0.02 2.39 16 46 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 47 H 0.07 2.05 7.68 -2.39 -0.02 2.03 16 48 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.10 2.03 6.93 -2.39 -0.02 2.01 16 Total: -1.00 -63.49 377.57 0.69 -62.80 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.90 Total: 20.03 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 6.07 Total: -6.36 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -8.07 Total: -94.43 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.25 Total: -26.68 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -63.49 0.69 -62.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256291150.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.347 kcal (2) G-P(sol) polarization free energy of solvation -63.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds