Wall clock time and date at job start Tue Mar 31 2020 11:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47819 * 2 1 4 4 H 1.09002 * 109.47047 * 54.99728 * 3 2 1 5 5 C 1.53002 * 109.47251 * 295.00433 * 3 2 1 6 6 C 1.52997 * 109.47435 * 175.00149 * 3 2 1 7 7 H 1.09004 * 109.47173 * 305.00200 * 6 3 2 8 8 C 1.53000 * 109.47241 * 65.00290 * 6 3 2 9 9 N 1.46499 * 109.47154 * 185.00141 * 6 3 2 10 10 C 1.34779 * 120.00390 * 154.99577 * 9 6 3 11 11 O 1.21349 * 119.99499 * 0.02562 * 10 9 6 12 12 C 1.49448 * 120.00360 * 180.02562 * 10 9 6 13 13 O 1.21351 * 119.99780 * 6.08244 * 12 10 9 14 14 N 1.34771 * 120.00054 * 185.81213 * 12 10 9 15 15 C 1.46926 * 120.62966 * 7.51148 * 14 12 10 16 16 C 1.52758 * 109.01246 * 233.58258 * 15 14 12 17 17 C 1.53043 * 109.38358 * 305.59338 * 16 15 14 18 18 C 1.50698 * 109.45046 * 181.25193 * 17 16 15 19 19 H 1.08006 * 119.99833 * 239.93883 * 18 17 16 20 20 C 1.37876 * 120.00273 * 59.93310 * 18 17 16 21 21 N 1.31514 * 119.99791 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99847 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47272 * 60.00318 * 22 20 18 24 24 H 1.48508 * 109.47118 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47536 * 299.99827 * 22 20 18 26 26 C 1.53040 * 109.53948 * 61.23220 * 17 16 15 27 27 C 1.46927 * 120.63298 * 187.79037 * 14 12 10 28 28 H 1.09008 * 109.46837 * 299.99844 * 1 2 3 29 29 H 1.09007 * 109.47107 * 59.99515 * 1 2 3 30 30 H 1.08998 * 109.47526 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47230 * 239.99785 * 2 1 3 32 32 H 1.09007 * 109.47107 * 120.00485 * 2 1 3 33 33 H 1.09001 * 109.47010 * 299.99807 * 5 3 2 34 34 H 1.09005 * 109.46891 * 59.99252 * 5 3 2 35 35 H 1.08997 * 109.47197 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47110 * 59.99872 * 8 6 3 37 37 H 1.08995 * 109.46997 * 180.02562 * 8 6 3 38 38 H 1.09001 * 109.46616 * 299.99738 * 8 6 3 39 39 H 0.97007 * 120.00200 * 335.00411 * 9 6 3 40 40 H 1.09000 * 109.58896 * 353.41957 * 15 14 12 41 41 H 1.09012 * 109.58906 * 113.84585 * 15 14 12 42 42 H 1.09002 * 109.56940 * 185.55203 * 16 15 14 43 43 H 1.09004 * 109.35731 * 65.49849 * 16 15 14 44 44 H 1.09006 * 109.45634 * 301.21343 * 17 16 15 45 45 H 0.97003 * 119.99815 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.49816 * 178.68486 * 26 17 16 47 47 H 1.08998 * 109.52307 * 58.60726 * 26 17 16 48 48 H 1.08997 * 109.58932 * 246.15838 * 27 14 12 49 49 H 1.09003 * 109.58346 * 6.44175 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4441 0.1257 7 1 3.8571 0.8797 1.0113 8 6 4.1798 0.7974 -1.1171 9 7 4.0434 2.8235 0.2458 10 6 5.2191 3.0785 0.8534 11 8 5.8815 2.1654 1.3006 12 6 5.7070 4.4858 0.9764 13 8 4.9968 5.4066 0.6297 14 7 6.9336 4.7324 1.4775 15 6 7.8649 3.6300 1.7536 16 6 8.3422 3.7325 3.2010 17 6 8.9264 5.1258 3.4458 18 6 9.4258 5.2183 4.8646 19 1 9.0122 5.9568 5.5355 20 6 10.4106 4.3604 5.3063 21 7 10.9145 3.4615 4.4892 22 14 11.0290 4.4748 7.0652 23 1 9.9015 4.2396 8.0026 24 1 12.0796 3.4491 7.2883 25 1 11.5972 5.8259 7.3033 26 6 7.8434 6.1824 3.2164 27 6 7.3626 6.1081 1.7638 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0699 1.5875 -2.1492 34 1 0.5490 2.1252 -1.3968 35 1 1.9984 3.1543 -1.3071 36 1 3.8876 1.3618 -2.0027 37 1 5.2661 0.7982 -1.0273 38 1 3.8238 -0.2289 -1.2064 39 1 3.5140 3.5535 -0.1119 40 1 7.3576 2.6769 1.6042 41 1 8.7220 3.6992 1.0834 42 1 9.1077 2.9792 3.3873 43 1 7.4990 3.5687 3.8720 44 1 9.7539 5.2985 2.7576 45 1 11.6076 2.8581 4.7998 46 1 8.2539 7.1728 3.4135 47 1 7.0048 5.9961 3.8872 48 1 8.1777 6.3835 1.0945 49 1 6.5246 6.7899 1.6187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324912554.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:32 Heat of formation + Delta-G solvation = -77.487935 kcal Electronic energy + Delta-G solvation = -26800.794550 eV Core-core repulsion = 23148.691973 eV Total energy + Delta-G solvation = -3652.102577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.76411 -39.01510 -37.63549 -36.94950 -34.30553 -33.35963 -31.19014 -30.84337 -30.02977 -28.96242 -26.66374 -25.71467 -24.75137 -22.98880 -22.36268 -21.62691 -20.29870 -19.63493 -18.74569 -17.39273 -16.79003 -16.29398 -15.76613 -15.64732 -15.48924 -15.19013 -14.56146 -14.45493 -14.32734 -13.97869 -13.61531 -13.29936 -12.96091 -12.89365 -12.71584 -12.53503 -12.45744 -12.37729 -12.20759 -12.10022 -11.69724 -11.39098 -11.26611 -11.06403 -10.91961 -10.91399 -10.84600 -10.72996 -10.58360 -10.32256 -10.03132 -9.66602 -9.28576 -9.21095 -9.14284 -8.48701 -8.27919 -8.06195 -5.97835 -4.04311 1.64696 2.55445 3.32682 3.37410 3.40042 3.45344 3.78781 4.33820 4.44451 4.47178 4.56416 4.60735 4.91960 5.05252 5.11692 5.20156 5.25170 5.29528 5.31843 5.51447 5.62043 5.65087 5.66235 5.68229 5.73535 5.77696 5.86959 5.89297 5.95038 6.03389 6.10032 6.17071 6.19380 6.28291 6.50014 6.65042 6.77993 6.84308 7.01570 7.18073 7.21338 7.36336 7.69620 7.82836 7.95349 8.00940 8.12443 8.28612 8.45308 8.98559 9.60233 11.07586 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.002929 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.159849 B = 9556.169865 C =10172.265642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.100 4.100 4 H 0.078 0.922 5 C -0.155 4.155 6 C 0.143 3.857 7 H 0.093 0.907 8 C -0.168 4.168 9 N -0.700 5.700 10 C 0.511 3.489 11 O -0.500 6.500 12 C 0.499 3.501 13 O -0.547 6.547 14 N -0.560 5.560 15 C 0.045 3.955 16 C -0.117 4.117 17 C 0.046 3.954 18 C -0.513 4.513 19 H 0.054 0.946 20 C 0.061 3.939 21 N -0.890 5.890 22 Si 0.891 3.109 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.278 1.278 26 C -0.123 4.123 27 C 0.107 3.893 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.409 0.591 40 H 0.140 0.860 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.036 0.964 44 H 0.027 0.973 45 H 0.261 0.739 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.066 0.934 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.592 -5.782 -12.463 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.119 4.119 4 H 0.097 0.903 5 C -0.212 4.212 6 C 0.038 3.962 7 H 0.111 0.889 8 C -0.226 4.226 9 N -0.354 5.354 10 C 0.293 3.707 11 O -0.376 6.376 12 C 0.281 3.719 13 O -0.427 6.427 14 N -0.291 5.291 15 C -0.075 4.075 16 C -0.155 4.155 17 C 0.027 3.973 18 C -0.551 4.551 19 H 0.072 0.928 20 C -0.140 4.140 21 N -0.529 5.529 22 Si 0.719 3.281 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.204 1.204 26 C -0.161 4.161 27 C -0.014 4.014 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.246 0.754 40 H 0.157 0.843 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.310 -6.102 -12.315 22.102 hybrid contribution 0.302 0.454 0.915 1.065 sum -17.007 -5.648 -11.400 21.240 Atomic orbital electron populations 1.21817 0.95613 1.01654 1.01992 1.21564 0.96058 0.95354 1.02583 1.21449 0.93720 0.97466 0.99310 0.90324 1.21999 1.01684 1.00412 0.97126 1.21109 0.93139 0.82044 0.99858 0.88925 1.22289 1.01882 1.00833 0.97568 1.45945 1.21465 1.09847 1.58134 1.20437 0.81925 0.90021 0.78317 1.90399 1.53506 1.46819 1.46868 1.19887 0.83009 0.88854 0.80166 1.90686 1.56221 1.45595 1.50160 1.48234 1.12957 1.09815 1.58087 1.23387 0.92599 0.91559 0.99949 1.21846 1.00124 1.02742 0.90836 1.18689 0.91862 0.89929 0.96819 1.21149 1.19984 1.17258 0.96735 0.92821 1.24961 0.96329 0.95343 0.97334 1.69840 1.27810 1.20200 1.35046 0.86680 0.78481 0.77676 0.85267 1.20362 1.21314 1.20353 1.22017 1.00210 1.01200 0.92647 1.21882 0.99547 0.81539 0.98477 0.92708 0.92440 0.92725 0.91387 0.91570 0.91851 0.92062 0.92615 0.91943 0.91862 0.91249 0.75369 0.84329 0.92610 0.87770 0.94492 0.95518 0.92930 0.91887 0.92920 0.91589 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.67 37.15 0.36 -0.53 16 2 C -0.12 -0.76 5.03 -26.74 -0.13 -0.89 16 3 C -0.10 -0.75 2.32 -90.62 -0.21 -0.96 16 4 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 5 C -0.16 -1.01 8.33 37.16 0.31 -0.70 16 6 C 0.14 1.39 2.35 -67.93 -0.16 1.23 16 7 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 8 C -0.17 -1.49 8.75 37.16 0.33 -1.17 16 9 N -0.70 -8.35 5.00 -54.24 -0.27 -8.62 16 10 C 0.51 8.05 7.75 -11.58 -0.09 7.96 16 11 O -0.50 -8.86 12.76 5.50 0.07 -8.79 16 12 C 0.50 8.91 7.74 -11.59 -0.09 8.82 16 13 O -0.55 -10.17 15.95 5.50 0.09 -10.08 16 14 N -0.56 -10.67 2.98 -173.54 -0.52 -11.19 16 15 C 0.04 0.91 6.24 -3.93 -0.02 0.88 16 16 C -0.12 -2.78 5.14 -26.83 -0.14 -2.92 16 17 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 18 C -0.51 -14.01 8.56 -34.44 -0.29 -14.30 16 19 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.89 -25.15 11.31 55.43 0.63 -24.52 16 22 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C -0.12 -2.56 5.30 -26.61 -0.14 -2.70 16 27 C 0.11 1.99 6.41 -3.71 -0.02 1.97 16 28 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 29 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.40 6.81 -51.92 -0.35 0.05 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.39 6.35 -51.93 -0.33 0.06 16 34 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 35 H 0.05 0.38 6.77 -51.93 -0.35 0.03 16 36 H 0.06 0.50 6.35 -51.93 -0.33 0.17 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.51 6.68 -51.93 -0.35 0.16 16 39 H 0.41 4.44 6.66 -40.82 -0.27 4.17 16 40 H 0.14 2.77 3.78 -56.75 -0.21 2.56 16 41 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 42 H 0.10 2.75 6.03 -51.93 -0.31 2.43 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.08 1.40 7.06 -51.93 -0.37 1.04 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -29.65 372.63 -8.15 -37.80 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -8.14 Total: 4.27 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.60 Total: -0.76 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.16 Total: -44.33 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.16 Total: -18.87 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.65 -8.15 -37.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324912554.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.689 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds