Wall clock time and date at job start Tue Mar 31 2020 11:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47819 * 2 1 4 4 H 1.09002 * 109.47047 * 54.99728 * 3 2 1 5 5 C 1.53002 * 109.47251 * 295.00433 * 3 2 1 6 6 C 1.52997 * 109.47435 * 175.00149 * 3 2 1 7 7 H 1.09004 * 109.47173 * 305.00200 * 6 3 2 8 8 C 1.53000 * 109.47241 * 65.00290 * 6 3 2 9 9 N 1.46499 * 109.47154 * 185.00141 * 6 3 2 10 10 C 1.34779 * 120.00390 * 154.99577 * 9 6 3 11 11 O 1.21349 * 119.99499 * 0.02562 * 10 9 6 12 12 C 1.49448 * 120.00360 * 180.02562 * 10 9 6 13 13 O 1.21351 * 119.99780 * 6.08244 * 12 10 9 14 14 N 1.34771 * 120.00054 * 185.81213 * 12 10 9 15 15 C 1.46926 * 120.62966 * 7.51148 * 14 12 10 16 16 C 1.52758 * 109.01246 * 233.58258 * 15 14 12 17 17 C 1.53043 * 109.38358 * 305.59338 * 16 15 14 18 18 C 1.50698 * 109.45046 * 181.25193 * 17 16 15 19 19 H 1.08006 * 119.99833 * 239.93883 * 18 17 16 20 20 C 1.37876 * 120.00273 * 59.93310 * 18 17 16 21 21 N 1.31514 * 119.99791 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99847 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47272 * 60.00318 * 22 20 18 24 24 H 1.48508 * 109.47118 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47536 * 299.99827 * 22 20 18 26 26 C 1.53040 * 109.53948 * 61.23220 * 17 16 15 27 27 C 1.46927 * 120.63298 * 187.79037 * 14 12 10 28 28 H 1.09008 * 109.46837 * 299.99844 * 1 2 3 29 29 H 1.09007 * 109.47107 * 59.99515 * 1 2 3 30 30 H 1.08998 * 109.47526 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47230 * 239.99785 * 2 1 3 32 32 H 1.09007 * 109.47107 * 120.00485 * 2 1 3 33 33 H 1.09001 * 109.47010 * 299.99807 * 5 3 2 34 34 H 1.09005 * 109.46891 * 59.99252 * 5 3 2 35 35 H 1.08997 * 109.47197 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47110 * 59.99872 * 8 6 3 37 37 H 1.08995 * 109.46997 * 180.02562 * 8 6 3 38 38 H 1.09001 * 109.46616 * 299.99738 * 8 6 3 39 39 H 0.97007 * 120.00200 * 335.00411 * 9 6 3 40 40 H 1.09000 * 109.58896 * 353.41957 * 15 14 12 41 41 H 1.09012 * 109.58906 * 113.84585 * 15 14 12 42 42 H 1.09002 * 109.56940 * 185.55203 * 16 15 14 43 43 H 1.09004 * 109.35731 * 65.49849 * 16 15 14 44 44 H 1.09006 * 109.45634 * 301.21343 * 17 16 15 45 45 H 0.97003 * 119.99815 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.49816 * 178.68486 * 26 17 16 47 47 H 1.08998 * 109.52307 * 58.60726 * 26 17 16 48 48 H 1.08997 * 109.58932 * 246.15838 * 27 14 12 49 49 H 1.09003 * 109.58346 * 6.44175 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4441 0.1257 7 1 3.8571 0.8797 1.0113 8 6 4.1798 0.7974 -1.1171 9 7 4.0434 2.8235 0.2458 10 6 5.2191 3.0785 0.8534 11 8 5.8815 2.1654 1.3006 12 6 5.7070 4.4858 0.9764 13 8 4.9968 5.4066 0.6297 14 7 6.9336 4.7324 1.4775 15 6 7.8649 3.6300 1.7536 16 6 8.3422 3.7325 3.2010 17 6 8.9264 5.1258 3.4458 18 6 9.4258 5.2183 4.8646 19 1 9.0122 5.9568 5.5355 20 6 10.4106 4.3604 5.3063 21 7 10.9145 3.4615 4.4892 22 14 11.0290 4.4748 7.0652 23 1 9.9015 4.2396 8.0026 24 1 12.0796 3.4491 7.2883 25 1 11.5972 5.8259 7.3033 26 6 7.8434 6.1824 3.2164 27 6 7.3626 6.1081 1.7638 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0699 1.5875 -2.1492 34 1 0.5490 2.1252 -1.3968 35 1 1.9984 3.1543 -1.3071 36 1 3.8876 1.3618 -2.0027 37 1 5.2661 0.7982 -1.0273 38 1 3.8238 -0.2289 -1.2064 39 1 3.5140 3.5535 -0.1119 40 1 7.3576 2.6769 1.6042 41 1 8.7220 3.6992 1.0834 42 1 9.1077 2.9792 3.3873 43 1 7.4990 3.5687 3.8720 44 1 9.7539 5.2985 2.7576 45 1 11.6076 2.8581 4.7998 46 1 8.2539 7.1728 3.4135 47 1 7.0048 5.9961 3.8872 48 1 8.1777 6.3835 1.0945 49 1 6.5246 6.7899 1.6187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324912554.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:31 Heat of formation + Delta-G solvation = -94.941641 kcal Electronic energy + Delta-G solvation = -26801.551399 eV Core-core repulsion = 23148.691973 eV Total energy + Delta-G solvation = -3652.859426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.08755 -40.22295 -38.69517 -38.51994 -35.56494 -34.89766 -33.02839 -31.77349 -31.62462 -29.55707 -28.40199 -26.63640 -25.97189 -24.35803 -24.02014 -22.81163 -21.62525 -20.74994 -20.03839 -18.77771 -18.39242 -18.03236 -16.95415 -16.92177 -16.49170 -16.44882 -16.08396 -15.70260 -15.33413 -15.08290 -14.80940 -14.62644 -14.56699 -14.48178 -14.10939 -13.75773 -13.43065 -13.22796 -13.09007 -13.07354 -12.91464 -12.80125 -12.67933 -12.54965 -12.32825 -12.13333 -11.94887 -11.90239 -11.66775 -11.52357 -11.46860 -11.33379 -11.07009 -11.00562 -10.45376 -10.32339 -9.96285 -9.69672 -8.07494 -6.21564 0.29548 1.30380 1.41890 1.42861 1.50355 2.09170 2.43725 2.47684 3.18761 3.25827 3.66765 3.86877 3.99647 4.10519 4.26108 4.31244 4.33255 4.35233 4.47940 4.50647 4.55268 4.64104 4.68237 4.75373 4.78719 4.80921 4.91761 4.94698 4.99869 5.09552 5.13145 5.17095 5.18876 5.21978 5.23723 5.29237 5.38408 5.39569 5.52752 5.56848 5.59042 5.62503 5.96039 6.03186 6.10746 6.28721 6.38208 6.69712 6.88269 6.93574 7.46016 8.96064 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.002929 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.159849 B = 9556.169865 C =10172.265642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.093 4.093 4 H 0.073 0.927 5 C -0.154 4.154 6 C 0.139 3.861 7 H 0.077 0.923 8 C -0.163 4.163 9 N -0.679 5.679 10 C 0.511 3.489 11 O -0.524 6.524 12 C 0.500 3.500 13 O -0.551 6.551 14 N -0.569 5.569 15 C 0.060 3.940 16 C -0.106 4.106 17 C 0.042 3.958 18 C -0.535 4.535 19 H 0.051 0.949 20 C 0.014 3.986 21 N -0.914 5.914 22 Si 0.952 3.048 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.271 1.271 26 C -0.114 4.114 27 C 0.112 3.888 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.088 0.912 39 H 0.417 0.583 40 H 0.147 0.853 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.020 0.980 44 H 0.003 0.997 45 H 0.261 0.739 46 H 0.073 0.927 47 H 0.044 0.956 48 H 0.078 0.922 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.279 -5.785 -13.345 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.112 4.112 4 H 0.092 0.908 5 C -0.211 4.211 6 C 0.036 3.964 7 H 0.095 0.905 8 C -0.221 4.221 9 N -0.333 5.333 10 C 0.293 3.707 11 O -0.402 6.402 12 C 0.283 3.717 13 O -0.430 6.430 14 N -0.300 5.300 15 C -0.061 4.061 16 C -0.145 4.145 17 C 0.024 3.976 18 C -0.573 4.573 19 H 0.069 0.931 20 C -0.185 4.185 21 N -0.553 5.553 22 Si 0.778 3.222 23 H -0.200 1.200 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.152 4.152 27 C -0.010 4.010 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.107 0.893 39 H 0.255 0.745 40 H 0.164 0.836 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.039 0.961 44 H 0.021 0.979 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.048 -6.090 -13.223 23.974 hybrid contribution 0.755 0.450 1.162 1.457 sum -18.293 -5.640 -12.060 22.625 Atomic orbital electron populations 1.21808 0.94911 1.02086 1.02146 1.21564 0.96614 0.94464 1.02774 1.21400 0.91530 0.98411 0.99849 0.90840 1.22008 1.02515 1.00078 0.96542 1.21327 0.94930 0.80408 0.99785 0.90532 1.22260 1.00320 1.02162 0.97364 1.45952 1.19908 1.11272 1.56121 1.20115 0.82917 0.88752 0.78949 1.90367 1.54533 1.46888 1.48444 1.20222 0.82308 0.89836 0.79372 1.90677 1.56057 1.46133 1.50181 1.48210 1.13417 1.09534 1.58857 1.23145 0.92996 0.92574 0.97354 1.21608 0.98486 1.01422 0.92985 1.18660 0.92299 0.91594 0.95073 1.21523 1.20411 1.17327 0.98080 0.93118 1.25709 0.96605 0.95069 1.01113 1.69973 1.28072 1.20641 1.36629 0.85711 0.77941 0.77886 0.80692 1.20036 1.20908 1.19614 1.21864 0.98614 1.00367 0.94321 1.21841 1.00451 0.81759 0.96906 0.93116 0.91728 0.92205 0.90474 0.92165 0.91145 0.90944 0.92971 0.90670 0.94107 0.89308 0.74453 0.83644 0.92540 0.90679 0.96092 0.97893 0.92966 0.90876 0.93766 0.90421 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 71.98 0.70 -0.73 16 2 C -0.12 -1.26 5.03 30.59 0.15 -1.10 16 3 C -0.09 -1.20 2.32 -10.80 -0.03 -1.23 16 4 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 5 C -0.15 -1.60 8.33 71.98 0.60 -1.00 16 6 C 0.14 2.53 2.35 44.99 0.11 2.64 16 7 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16 8 C -0.16 -2.64 8.75 71.98 0.63 -2.01 16 9 N -0.68 -15.35 5.00 -443.87 -2.22 -17.57 16 10 C 0.51 15.78 7.75 87.27 0.68 16.45 16 11 O -0.52 -18.58 12.76 -3.24 -0.04 -18.62 16 12 C 0.50 17.34 7.74 87.27 0.68 18.02 16 13 O -0.55 -19.53 15.95 -3.25 -0.05 -19.58 16 14 N -0.57 -21.39 2.98 -821.31 -2.45 -23.83 16 15 C 0.06 2.45 6.24 86.22 0.54 2.99 16 16 C -0.11 -5.20 5.14 30.53 0.16 -5.04 16 17 C 0.04 2.13 2.07 -11.51 -0.02 2.10 16 18 C -0.54 -29.73 8.56 25.60 0.22 -29.51 16 19 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 20 C 0.01 0.77 5.30 84.65 0.45 1.22 16 21 N -0.91 -52.75 11.31 21.45 0.24 -52.51 16 22 Si 0.95 43.99 29.54 68.60 2.03 46.01 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 26 C -0.11 -4.73 5.30 30.67 0.16 -4.56 16 27 C 0.11 4.04 6.41 86.36 0.55 4.60 16 28 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.06 0.52 6.57 -2.38 -0.02 0.50 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.71 6.81 -2.38 -0.02 0.69 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.07 0.65 6.35 -2.39 -0.02 0.63 16 34 H 0.07 0.62 6.56 -2.38 -0.02 0.61 16 35 H 0.05 0.59 6.77 -2.39 -0.02 0.57 16 36 H 0.07 1.03 6.35 -2.39 -0.02 1.01 16 37 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 1.09 6.68 -2.39 -0.02 1.08 16 39 H 0.42 8.28 6.66 -92.70 -0.62 7.67 16 40 H 0.15 5.89 3.78 -78.78 -0.30 5.60 16 41 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 42 H 0.07 4.12 6.03 -2.39 -0.01 4.10 16 43 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 45 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 47 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 49 H 0.09 3.14 7.06 -2.39 -0.02 3.13 16 Total: -1.00 -63.78 372.63 3.11 -60.67 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.04 Total: 22.61 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 5.57 Total: 2.83 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -4.42 Total: -93.91 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.09 Total: -38.21 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -63.78 3.11 -60.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324912554.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.275 kcal (2) G-P(sol) polarization free energy of solvation -63.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds