Wall clock time and date at job start Tue Mar 31 2020 10:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47275 * 2 1 4 4 H 1.09002 * 109.99735 * 306.57361 * 3 2 1 5 5 C 1.54326 * 109.88510 * 67.67182 * 3 2 1 6 6 C 1.55151 * 102.94620 * 141.60956 * 5 3 2 7 7 C 1.55129 * 101.48616 * 324.33591 * 6 5 3 8 8 H 1.08999 * 110.34397 * 156.05948 * 7 6 5 9 9 C 1.53001 * 110.49175 * 278.45056 * 7 6 5 10 10 N 1.47020 * 109.88367 * 185.47952 * 3 2 1 11 11 C 1.34772 * 125.65033 * 61.60463 * 10 3 2 12 12 O 1.21349 * 119.99872 * 355.28330 * 11 10 3 13 13 C 1.49451 * 120.00378 * 175.28863 * 11 10 3 14 14 O 1.21349 * 119.99750 * 359.97438 * 13 11 10 15 15 N 1.34772 * 120.00378 * 179.97438 * 13 11 10 16 16 C 1.46496 * 120.00427 * 179.97438 * 15 13 11 17 17 C 1.53002 * 109.47557 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.46815 * 299.99860 * 17 16 15 19 19 C 1.52998 * 109.46998 * 59.99312 * 17 16 15 20 20 C 1.50693 * 109.47167 * 180.02562 * 17 16 15 21 21 H 1.08003 * 120.00662 * 359.97438 * 20 17 16 22 22 C 1.37879 * 119.99977 * 180.02562 * 20 17 16 23 23 N 1.31519 * 119.99940 * 359.97438 * 22 20 17 24 24 Si 1.86803 * 120.00126 * 179.97438 * 22 20 17 25 25 H 1.48501 * 109.47026 * 90.00081 * 24 22 20 26 26 H 1.48497 * 109.47078 * 209.99662 * 24 22 20 27 27 H 1.48496 * 109.47011 * 329.99668 * 24 22 20 28 28 H 1.08996 * 109.46846 * 304.96013 * 1 2 3 29 29 H 1.08994 * 109.46777 * 64.95995 * 1 2 3 30 30 H 1.09003 * 109.47163 * 184.96276 * 1 2 3 31 31 H 1.08997 * 109.46971 * 239.99428 * 2 1 3 32 32 H 1.09007 * 109.46816 * 120.00017 * 2 1 3 33 33 H 1.09002 * 110.71588 * 259.97541 * 5 3 2 34 34 H 1.08999 * 110.71876 * 23.24172 * 5 3 2 35 35 H 1.08999 * 111.00274 * 82.56995 * 6 5 3 36 36 H 1.08996 * 111.00623 * 206.38334 * 6 5 3 37 37 H 1.09000 * 109.47294 * 175.34930 * 9 7 6 38 38 H 1.08996 * 109.47339 * 295.35102 * 9 7 6 39 39 H 1.09004 * 109.47080 * 55.35793 * 9 7 6 40 40 H 0.97004 * 119.99667 * 359.97438 * 15 13 11 41 41 H 1.08998 * 109.47293 * 59.99511 * 16 15 13 42 42 H 1.08998 * 109.47237 * 299.99825 * 16 15 13 43 43 H 1.08998 * 109.47123 * 59.99808 * 18 17 16 44 44 H 1.09002 * 109.46716 * 179.97438 * 18 17 16 45 45 H 1.08998 * 109.46921 * 299.99787 * 18 17 16 46 46 H 1.09007 * 109.46509 * 60.00839 * 19 17 16 47 47 H 1.09002 * 109.47159 * 179.97438 * 19 17 16 48 48 H 1.08998 * 109.47473 * 300.00519 * 19 17 16 49 49 H 0.96998 * 119.99567 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5889 1.9973 -0.8226 5 6 1.6953 2.1211 1.3424 6 6 2.9524 2.9841 1.6287 7 6 4.0822 2.0780 1.0727 8 1 4.9536 2.6774 0.8091 9 6 4.4618 1.0062 2.0965 10 7 3.5043 1.4550 -0.1320 11 6 4.2028 0.9720 -1.1784 12 8 3.6271 0.3968 -2.0786 13 6 5.6864 1.1444 -1.2302 14 8 6.2621 1.7199 -0.3302 15 7 6.3850 0.6609 -2.2764 16 6 7.8393 0.8304 -2.3274 17 6 8.3823 0.1949 -3.6089 18 6 8.0420 -1.2968 -3.6221 19 6 7.7467 0.8737 -4.8238 20 6 9.8783 0.3688 -3.6609 21 1 10.3906 0.8817 -2.8604 22 6 10.5930 -0.1260 -4.7312 23 7 9.9691 -0.7502 -5.7064 24 14 12.4473 0.0902 -4.7961 25 1 13.1041 -1.0691 -4.1405 26 1 12.8868 0.1722 -6.2122 27 1 12.8251 1.3392 -4.0874 28 1 -0.3633 0.5888 0.8422 29 1 -0.3633 0.4349 -0.9310 30 1 -0.3633 -1.0238 0.0889 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8901 33 1 0.8108 2.7499 1.2406 34 1 1.5522 1.3764 2.1255 35 1 2.9067 3.9313 1.0912 36 1 3.0771 3.1500 2.6987 37 1 5.1963 0.3298 1.6591 38 1 4.8870 1.4820 2.9801 39 1 3.5725 0.4429 2.3795 40 1 5.9249 0.2006 -2.9956 41 1 8.2921 0.3464 -1.4621 42 1 8.0817 1.8931 -2.3175 43 1 6.9600 -1.4230 -3.5841 44 1 8.4285 -1.7495 -4.5353 45 1 8.4948 -1.7804 -2.7566 46 1 7.9892 1.9364 -4.8143 47 1 8.1339 0.4213 -5.7367 48 1 6.6647 0.7475 -4.7858 49 1 10.4720 -1.0986 -6.4591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328963301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:51 Heat of formation + Delta-G solvation = -82.179534 kcal Electronic energy + Delta-G solvation = -27167.983358 eV Core-core repulsion = 23515.677338 eV Total energy + Delta-G solvation = -3652.306020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.86130 -39.02801 -37.63395 -36.45373 -34.05303 -33.35369 -31.78332 -30.87873 -29.94875 -26.78747 -25.95584 -25.71775 -25.27134 -24.06410 -22.87210 -21.50591 -20.58183 -19.51994 -18.77094 -17.47968 -16.93549 -15.96826 -15.72229 -15.48038 -14.97453 -14.84791 -14.61079 -14.34225 -14.03962 -13.71330 -13.55639 -13.13037 -12.95925 -12.86396 -12.73584 -12.51913 -12.43058 -12.21519 -12.12984 -11.65946 -11.40152 -11.38394 -11.29180 -11.16554 -10.95820 -10.87841 -10.79985 -10.70066 -10.44109 -10.39037 -10.19737 -9.64731 -9.46097 -9.11465 -8.81841 -8.77601 -8.56182 -8.36669 -6.02623 -4.13485 1.70938 2.49938 3.27895 3.35089 3.38358 3.50194 3.74743 4.31313 4.34484 4.41062 4.58827 4.81093 4.88521 4.97714 5.02696 5.17784 5.20068 5.23987 5.38446 5.44379 5.46031 5.57381 5.66275 5.71996 5.83539 5.87196 5.95133 5.99738 6.11649 6.12732 6.19947 6.24152 6.33227 6.47751 6.67063 6.85794 6.85871 6.95346 7.00831 7.26246 7.33858 7.55499 7.64205 7.69972 8.00339 8.01416 8.14069 8.34439 8.43860 8.86817 9.52434 10.98779 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027229 B = 0.003026 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.068751 B = 9252.103597 C = 9855.533592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.136 3.864 4 H 0.078 0.922 5 C -0.127 4.127 6 C -0.132 4.132 7 C 0.117 3.883 8 H 0.117 0.883 9 C -0.152 4.152 10 N -0.587 5.587 11 C 0.522 3.478 12 O -0.521 6.521 13 C 0.498 3.502 14 O -0.530 6.530 15 N -0.681 5.681 16 C 0.129 3.871 17 C 0.056 3.944 18 C -0.133 4.133 19 C -0.133 4.133 20 C -0.508 4.508 21 H 0.058 0.942 22 C 0.067 3.933 23 N -0.884 5.884 24 Si 0.894 3.106 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.410 0.590 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.008 0.992 44 H 0.087 0.913 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.087 0.913 48 H 0.008 0.992 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.092 4.358 13.508 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.034 3.966 4 H 0.096 0.904 5 C -0.164 4.164 6 C -0.170 4.170 7 C 0.015 3.985 8 H 0.134 0.866 9 C -0.210 4.210 10 N -0.322 5.322 11 C 0.305 3.695 12 O -0.397 6.397 13 C 0.277 3.723 14 O -0.408 6.408 15 N -0.332 5.332 16 C 0.008 3.992 17 C 0.056 3.944 18 C -0.191 4.191 19 C -0.191 4.191 20 C -0.546 4.546 21 H 0.076 0.924 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.722 3.278 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.247 0.753 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.027 0.973 44 H 0.105 0.895 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.106 0.894 48 H 0.027 0.973 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.862 4.331 13.377 21.955 hybrid contribution 0.792 -0.178 -0.405 0.907 sum -16.070 4.153 12.972 21.066 Atomic orbital electron populations 1.21713 0.95134 1.01824 1.01789 1.21945 0.96138 0.96113 1.03464 1.21718 0.79842 0.96887 0.98202 0.90429 1.22738 0.98384 0.99185 0.96138 1.22913 0.94117 0.98145 1.01835 1.22349 0.97676 0.94275 0.84236 0.86574 1.22038 1.01335 0.99021 0.98629 1.48439 1.06860 1.58536 1.18347 1.20170 0.88533 0.79257 0.81529 1.90731 1.71254 1.40585 1.37144 1.19918 0.87390 0.81159 0.83808 1.90645 1.70809 1.42133 1.37209 1.46220 1.10129 1.54934 1.21955 1.21922 0.75371 1.00816 1.01141 1.18374 0.95315 0.92108 0.88644 1.21854 0.95800 0.98625 1.02809 1.21853 0.95363 0.98949 1.02941 1.20954 0.90568 1.36940 1.06156 0.92360 1.24886 0.98382 0.94810 0.95408 1.69812 1.35135 1.37697 1.09620 0.86557 0.85495 0.78567 0.77164 1.20706 1.21255 1.19898 0.92666 0.92595 0.92538 0.90112 0.91869 0.90090 0.90299 0.90522 0.89710 0.92018 0.91428 0.92864 0.75255 0.92067 0.92063 0.97294 0.89458 0.95380 0.95372 0.89450 0.97275 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.83 37.16 0.37 -0.80 16 2 C -0.14 -1.44 5.41 -26.73 -0.14 -1.58 16 3 C 0.14 1.43 2.92 -66.96 -0.20 1.24 16 4 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 5 C -0.13 -0.94 5.17 -24.90 -0.13 -1.07 16 6 C -0.13 -1.05 6.58 -24.47 -0.16 -1.21 16 7 C 0.12 1.33 2.74 -66.30 -0.18 1.15 16 8 H 0.12 1.56 5.87 -51.93 -0.30 1.26 16 9 C -0.15 -1.61 9.41 37.16 0.35 -1.26 16 10 N -0.59 -7.71 2.71 -155.97 -0.42 -8.13 16 11 C 0.52 8.52 7.73 -11.59 -0.09 8.43 16 12 O -0.52 -9.40 15.27 5.50 0.08 -9.32 16 13 C 0.50 8.92 7.86 -11.59 -0.09 8.83 16 14 O -0.53 -9.91 13.37 5.50 0.07 -9.83 16 15 N -0.68 -12.87 4.95 -60.73 -0.30 -13.17 16 16 C 0.13 2.72 4.50 -4.04 -0.02 2.70 16 17 C 0.06 1.31 0.50 -155.66 -0.08 1.24 16 18 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 19 C -0.13 -3.08 8.08 37.16 0.30 -2.78 16 20 C -0.51 -13.21 8.01 -34.44 -0.28 -13.49 16 21 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 22 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 23 N -0.88 -23.69 9.35 55.43 0.52 -23.17 16 24 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.05 0.36 7.36 -51.93 -0.38 -0.03 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.07 6.55 -51.93 -0.34 0.73 16 32 H 0.06 0.64 8.01 -51.92 -0.42 0.22 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.53 7.31 -51.93 -0.38 0.15 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.53 8.05 -51.93 -0.42 0.12 16 37 H 0.06 0.80 7.89 -51.93 -0.41 0.39 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.50 7.36 -51.93 -0.38 0.12 16 40 H 0.41 7.72 5.64 -40.82 -0.23 7.49 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 44 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 47 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 48 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 49 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -27.87 375.84 -7.92 -35.79 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -8.37 Total: 6.28 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -0.14 Total: 0.27 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -0.21 Total: -44.47 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.16 Total: -19.15 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.87 -7.92 -35.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328963301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.388 kcal (2) G-P(sol) polarization free energy of solvation -27.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds