Wall clock time and date at job start Tue Mar 31 2020 10:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47275 * 2 1 4 4 H 1.09002 * 109.99735 * 306.57361 * 3 2 1 5 5 C 1.54326 * 109.88510 * 67.67182 * 3 2 1 6 6 C 1.55151 * 102.94620 * 141.60956 * 5 3 2 7 7 C 1.55129 * 101.48616 * 324.33591 * 6 5 3 8 8 H 1.08999 * 110.34397 * 156.05948 * 7 6 5 9 9 C 1.53001 * 110.49175 * 278.45056 * 7 6 5 10 10 N 1.47020 * 109.88367 * 185.47952 * 3 2 1 11 11 C 1.34772 * 125.65033 * 61.60463 * 10 3 2 12 12 O 1.21349 * 119.99872 * 355.28330 * 11 10 3 13 13 C 1.49451 * 120.00378 * 175.28863 * 11 10 3 14 14 O 1.21349 * 119.99750 * 359.97438 * 13 11 10 15 15 N 1.34772 * 120.00378 * 179.97438 * 13 11 10 16 16 C 1.46496 * 120.00427 * 179.97438 * 15 13 11 17 17 C 1.53002 * 109.47557 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.46815 * 299.99860 * 17 16 15 19 19 C 1.52998 * 109.46998 * 59.99312 * 17 16 15 20 20 C 1.50693 * 109.47167 * 180.02562 * 17 16 15 21 21 H 1.08003 * 120.00662 * 359.97438 * 20 17 16 22 22 C 1.37879 * 119.99977 * 180.02562 * 20 17 16 23 23 N 1.31519 * 119.99940 * 359.97438 * 22 20 17 24 24 Si 1.86803 * 120.00126 * 179.97438 * 22 20 17 25 25 H 1.48501 * 109.47026 * 90.00081 * 24 22 20 26 26 H 1.48497 * 109.47078 * 209.99662 * 24 22 20 27 27 H 1.48496 * 109.47011 * 329.99668 * 24 22 20 28 28 H 1.08996 * 109.46846 * 304.96013 * 1 2 3 29 29 H 1.08994 * 109.46777 * 64.95995 * 1 2 3 30 30 H 1.09003 * 109.47163 * 184.96276 * 1 2 3 31 31 H 1.08997 * 109.46971 * 239.99428 * 2 1 3 32 32 H 1.09007 * 109.46816 * 120.00017 * 2 1 3 33 33 H 1.09002 * 110.71588 * 259.97541 * 5 3 2 34 34 H 1.08999 * 110.71876 * 23.24172 * 5 3 2 35 35 H 1.08999 * 111.00274 * 82.56995 * 6 5 3 36 36 H 1.08996 * 111.00623 * 206.38334 * 6 5 3 37 37 H 1.09000 * 109.47294 * 175.34930 * 9 7 6 38 38 H 1.08996 * 109.47339 * 295.35102 * 9 7 6 39 39 H 1.09004 * 109.47080 * 55.35793 * 9 7 6 40 40 H 0.97004 * 119.99667 * 359.97438 * 15 13 11 41 41 H 1.08998 * 109.47293 * 59.99511 * 16 15 13 42 42 H 1.08998 * 109.47237 * 299.99825 * 16 15 13 43 43 H 1.08998 * 109.47123 * 59.99808 * 18 17 16 44 44 H 1.09002 * 109.46716 * 179.97438 * 18 17 16 45 45 H 1.08998 * 109.46921 * 299.99787 * 18 17 16 46 46 H 1.09007 * 109.46509 * 60.00839 * 19 17 16 47 47 H 1.09002 * 109.47159 * 179.97438 * 19 17 16 48 48 H 1.08998 * 109.47473 * 300.00519 * 19 17 16 49 49 H 0.96998 * 119.99567 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5889 1.9973 -0.8226 5 6 1.6953 2.1211 1.3424 6 6 2.9524 2.9841 1.6287 7 6 4.0822 2.0780 1.0727 8 1 4.9536 2.6774 0.8091 9 6 4.4618 1.0062 2.0965 10 7 3.5043 1.4550 -0.1320 11 6 4.2028 0.9720 -1.1784 12 8 3.6271 0.3968 -2.0786 13 6 5.6864 1.1444 -1.2302 14 8 6.2621 1.7199 -0.3302 15 7 6.3850 0.6609 -2.2764 16 6 7.8393 0.8304 -2.3274 17 6 8.3823 0.1949 -3.6089 18 6 8.0420 -1.2968 -3.6221 19 6 7.7467 0.8737 -4.8238 20 6 9.8783 0.3688 -3.6609 21 1 10.3906 0.8817 -2.8604 22 6 10.5930 -0.1260 -4.7312 23 7 9.9691 -0.7502 -5.7064 24 14 12.4473 0.0902 -4.7961 25 1 13.1041 -1.0691 -4.1405 26 1 12.8868 0.1722 -6.2122 27 1 12.8251 1.3392 -4.0874 28 1 -0.3633 0.5888 0.8422 29 1 -0.3633 0.4349 -0.9310 30 1 -0.3633 -1.0238 0.0889 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8901 33 1 0.8108 2.7499 1.2406 34 1 1.5522 1.3764 2.1255 35 1 2.9067 3.9313 1.0912 36 1 3.0771 3.1500 2.6987 37 1 5.1963 0.3298 1.6591 38 1 4.8870 1.4820 2.9801 39 1 3.5725 0.4429 2.3795 40 1 5.9249 0.2006 -2.9956 41 1 8.2921 0.3464 -1.4621 42 1 8.0817 1.8931 -2.3175 43 1 6.9600 -1.4230 -3.5841 44 1 8.4285 -1.7495 -4.5353 45 1 8.4948 -1.7804 -2.7566 46 1 7.9892 1.9364 -4.8143 47 1 8.1339 0.4213 -5.7367 48 1 6.6647 0.7475 -4.7858 49 1 10.4720 -1.0986 -6.4591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328963301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:50 Heat of formation + Delta-G solvation = -97.620770 kcal Electronic energy + Delta-G solvation = -27168.652940 eV Core-core repulsion = 23515.677338 eV Total energy + Delta-G solvation = -3652.975602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.04562 -40.30975 -38.85909 -38.20117 -35.18102 -34.75436 -32.85319 -32.67167 -30.72002 -28.13884 -27.61905 -27.34445 -26.88434 -25.31557 -23.71875 -22.64213 -21.50831 -20.85149 -20.47050 -18.71713 -18.22311 -17.73987 -17.03963 -16.77969 -16.64641 -16.13801 -15.64394 -15.53885 -15.14968 -15.04669 -14.80060 -14.58894 -14.32186 -14.08154 -13.87121 -13.74418 -13.29628 -13.25025 -13.19681 -13.13897 -12.91560 -12.71535 -12.61050 -12.47315 -12.40644 -12.30058 -12.13105 -12.08854 -11.76192 -11.53338 -11.48147 -11.32462 -11.25360 -10.76200 -10.46289 -10.42510 -10.15284 -9.82505 -8.02897 -6.19795 0.34658 1.27838 1.43707 1.46480 1.54813 2.12844 2.42217 2.54551 3.20952 3.31331 3.55059 3.69705 3.87669 4.12238 4.20896 4.26485 4.32471 4.44772 4.44989 4.49171 4.56730 4.64955 4.68837 4.75473 4.89465 4.96375 4.97473 5.00846 5.02277 5.05904 5.09984 5.14104 5.16149 5.18477 5.21555 5.26774 5.31298 5.41382 5.46794 5.50356 5.61825 5.65694 6.08018 6.08360 6.16624 6.28670 6.39078 6.68746 6.84597 6.96705 7.48373 8.96539 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027229 B = 0.003026 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.068751 B = 9252.103597 C = 9855.533592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.127 3.873 4 H 0.073 0.927 5 C -0.115 4.115 6 C -0.122 4.122 7 C 0.106 3.894 8 H 0.092 0.908 9 C -0.147 4.147 10 N -0.580 5.580 11 C 0.519 3.481 12 O -0.546 6.546 13 C 0.497 3.503 14 O -0.538 6.538 15 N -0.683 5.683 16 C 0.146 3.854 17 C 0.051 3.949 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.527 4.527 21 H 0.052 0.948 22 C 0.026 3.974 23 N -0.902 5.902 24 Si 0.950 3.050 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.272 1.272 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.029 0.971 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.411 0.589 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.027 0.973 44 H 0.064 0.936 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.064 0.936 48 H 0.027 0.973 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.831 5.263 15.581 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.025 3.975 4 H 0.091 0.909 5 C -0.153 4.153 6 C -0.160 4.160 7 C 0.004 3.996 8 H 0.110 0.890 9 C -0.205 4.205 10 N -0.313 5.313 11 C 0.302 3.698 12 O -0.424 6.424 13 C 0.277 3.723 14 O -0.416 6.416 15 N -0.335 5.335 16 C 0.023 3.977 17 C 0.051 3.949 18 C -0.181 4.181 19 C -0.181 4.181 20 C -0.566 4.566 21 H 0.070 0.930 22 C -0.174 4.174 23 N -0.540 5.540 24 Si 0.776 3.224 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.048 0.952 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.248 0.752 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.083 0.917 45 H 0.042 0.958 46 H 0.043 0.957 47 H 0.083 0.917 48 H 0.046 0.954 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.625 5.256 15.491 24.789 hybrid contribution 1.301 -0.436 -0.994 1.695 sum -17.324 4.820 14.497 23.098 Atomic orbital electron populations 1.21680 0.92987 1.02564 1.02629 1.21888 0.97953 0.95610 1.01870 1.22037 0.77808 0.97387 1.00264 0.90893 1.22775 0.98918 0.99410 0.94169 1.22908 0.92491 0.97358 1.03205 1.22535 0.98414 0.94852 0.83778 0.89014 1.21994 1.01236 0.98444 0.98778 1.48602 1.08301 1.56690 1.17667 1.19794 0.87642 0.79953 0.82435 1.90719 1.71254 1.42116 1.38328 1.20289 0.88412 0.80421 0.83128 1.90644 1.71404 1.42240 1.37353 1.46080 1.09231 1.55616 1.22605 1.21524 0.76656 0.99908 0.99600 1.18368 0.94367 0.92441 0.89756 1.21699 0.96832 0.98223 1.01310 1.21700 0.96403 0.98308 1.01681 1.21246 0.92150 1.37044 1.06126 0.92974 1.25515 1.01921 0.94697 0.95225 1.69932 1.36239 1.38030 1.09840 0.85689 0.81242 0.78421 0.77041 1.20471 1.21049 1.19689 0.90318 0.92942 0.92186 0.93627 0.91552 0.87497 0.88811 0.90255 0.87109 0.95164 0.89530 0.91276 0.75165 0.92805 0.92777 0.95439 0.91743 0.95793 0.95750 0.91739 0.95407 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.83 71.98 0.71 -1.20 16 2 C -0.13 -2.62 5.41 30.59 0.17 -2.45 16 3 C 0.13 2.42 2.92 45.34 0.13 2.55 16 4 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 5 C -0.12 -1.24 5.17 31.78 0.16 -1.08 16 6 C -0.12 -1.52 6.58 32.06 0.21 -1.31 16 7 C 0.11 2.25 2.74 45.54 0.12 2.38 16 8 H 0.09 2.43 5.87 -2.39 -0.01 2.41 16 9 C -0.15 -2.87 9.41 71.98 0.68 -2.19 16 10 N -0.58 -14.77 2.71 -765.74 -2.08 -16.85 16 11 C 0.52 17.12 7.73 87.27 0.67 17.80 16 12 O -0.55 -20.06 15.27 -3.24 -0.05 -20.11 16 13 C 0.50 18.08 7.86 87.27 0.69 18.77 16 14 O -0.54 -20.39 13.37 -3.24 -0.04 -20.44 16 15 N -0.68 -26.18 4.95 -464.43 -2.30 -28.48 16 16 C 0.15 6.22 4.50 86.38 0.39 6.61 16 17 C 0.05 2.43 0.50 -52.93 -0.03 2.40 16 18 C -0.12 -5.74 8.08 71.98 0.58 -5.16 16 19 C -0.12 -5.75 8.08 71.98 0.58 -5.16 16 20 C -0.53 -27.79 8.01 25.60 0.21 -27.58 16 21 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 22 C 0.03 1.38 5.15 84.65 0.44 1.82 16 23 N -0.90 -48.92 9.35 21.45 0.20 -48.72 16 24 Si 0.95 42.54 29.54 68.60 2.03 44.56 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 H 0.08 0.71 7.36 -2.39 -0.02 0.69 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 1.22 6.55 -2.39 -0.02 1.20 16 32 H 0.07 1.22 8.01 -2.38 -0.02 1.20 16 33 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.80 7.31 -2.39 -0.02 0.78 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.11 0.88 8.05 -2.39 -0.02 0.86 16 37 H 0.03 0.77 7.89 -2.39 -0.02 0.75 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.12 7.36 -2.38 -0.02 1.10 16 40 H 0.41 15.60 5.64 -92.71 -0.52 15.08 16 41 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 44 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 45 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 48 H 0.03 1.15 6.86 -2.39 -0.02 1.13 16 49 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -61.26 375.84 3.87 -57.39 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.41 Total: 26.45 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.71 Total: 6.19 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -4.18 Total: -94.05 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.09 Total: -40.54 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -61.26 3.87 -57.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328963301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.231 kcal (2) G-P(sol) polarization free energy of solvation -61.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds