Wall clock time and date at job start Tue Mar 31 2020 11:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46767 * 2 1 4 4 H 1.08999 * 109.46929 * 304.99965 * 3 2 1 5 5 C 1.52998 * 109.47119 * 65.00224 * 3 2 1 6 6 C 1.53003 * 109.46747 * 185.00239 * 3 2 1 7 7 C 1.53003 * 109.46993 * 175.00297 * 6 3 2 8 8 N 1.46499 * 109.47112 * 179.97438 * 7 6 3 9 9 C 1.34771 * 120.00096 * 179.97438 * 8 7 6 10 10 O 1.21349 * 119.99954 * 359.97438 * 9 8 7 11 11 C 1.49445 * 120.00246 * 180.02562 * 9 8 7 12 12 O 1.21354 * 119.99873 * 6.39948 * 11 9 8 13 13 N 1.34779 * 120.00399 * 186.40080 * 11 9 8 14 14 C 1.46924 * 120.62981 * 7.08164 * 13 11 9 15 15 C 1.53192 * 108.77870 * 233.58948 * 14 13 11 16 16 C 1.53039 * 109.31121 * 305.36483 * 15 14 13 17 17 C 1.53044 * 109.53634 * 61.36395 * 16 15 14 18 18 H 1.09001 * 109.49653 * 58.58834 * 17 16 15 19 19 C 1.50703 * 109.49310 * 178.68192 * 17 16 15 20 20 H 1.07993 * 120.00256 * 0.02562 * 19 17 16 21 21 C 1.37885 * 119.99618 * 179.97438 * 19 17 16 22 22 N 1.31510 * 119.99835 * 0.02562 * 21 19 17 23 23 Si 1.86794 * 119.99734 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47302 * 90.00195 * 23 21 19 25 25 H 1.48496 * 109.47065 * 209.99728 * 23 21 19 26 26 H 1.48498 * 109.47319 * 330.00159 * 23 21 19 27 27 C 1.46926 * 120.63335 * 186.80760 * 13 11 9 28 28 H 1.08996 * 109.47464 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47260 * 60.00057 * 1 2 3 30 30 H 1.09007 * 109.47302 * 300.00039 * 1 2 3 31 31 H 1.08992 * 109.46924 * 119.99257 * 2 1 3 32 32 H 1.08994 * 109.47286 * 240.00286 * 2 1 3 33 33 H 1.09002 * 109.46811 * 299.99375 * 5 3 2 34 34 H 1.08999 * 109.47432 * 60.00049 * 5 3 2 35 35 H 1.09006 * 109.47183 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.46726 * 294.99278 * 6 3 2 37 37 H 1.08997 * 109.47416 * 54.99567 * 6 3 2 38 38 H 1.09003 * 109.46490 * 299.99640 * 7 6 3 39 39 H 1.08997 * 109.47635 * 59.99405 * 7 6 3 40 40 H 0.96999 * 120.00046 * 359.97438 * 8 7 6 41 41 H 1.09012 * 109.58633 * 353.37531 * 14 13 11 42 42 H 1.08995 * 109.59074 * 113.65523 * 14 13 11 43 43 H 1.09002 * 109.49332 * 65.31411 * 15 14 13 44 44 H 1.08998 * 109.49763 * 185.40777 * 15 14 13 45 45 H 1.08999 * 109.45850 * 181.38204 * 16 15 14 46 46 H 1.08997 * 109.46114 * 301.35707 * 16 15 14 47 47 H 0.97003 * 119.99633 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.58501 * 246.20156 * 27 13 11 49 49 H 1.09002 * 109.58579 * 6.62244 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1258 7 6 4.0644 2.8851 -0.2511 8 7 5.5245 2.8869 -0.3710 9 6 6.1891 4.0529 -0.4942 10 8 5.5780 5.1012 -0.5065 11 6 7.6785 4.0548 -0.6171 12 8 8.2799 3.0060 -0.7227 13 7 8.3538 5.2211 -0.6105 14 6 7.6609 6.4858 -0.3291 15 6 7.9509 7.4706 -1.4661 16 6 9.4649 7.6090 -1.6419 17 6 10.0631 6.2507 -2.0149 18 1 9.6021 5.8903 -2.9346 19 6 11.5492 6.3948 -2.2194 20 1 12.0205 7.3585 -2.0954 21 6 12.3075 5.2958 -2.5639 22 7 11.7336 4.1221 -2.7144 23 14 14.1496 5.4742 -2.8166 24 1 14.8507 5.2435 -1.5280 25 1 14.6108 4.4778 -3.8163 26 1 14.4518 6.8432 -3.3064 27 6 9.7981 5.2515 -0.8786 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8932 -0.5137 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 0.5488 2.1253 1.3969 34 1 2.0698 1.5876 2.1492 35 1 1.9988 3.1542 1.3076 36 1 4.0029 0.9837 0.7597 37 1 3.8570 0.8801 -1.0113 38 1 3.6262 3.3458 -1.1365 39 1 3.7722 3.4495 0.6344 40 1 6.0129 2.0490 -0.3616 41 1 6.5873 6.3078 -0.2648 42 1 8.0200 6.8973 0.6141 43 1 7.5098 7.0986 -2.3909 44 1 7.5223 8.4429 -1.2234 45 1 9.6742 8.3279 -2.4340 46 1 9.9084 7.9571 -0.7091 47 1 12.2671 3.3489 -2.9564 48 1 10.3299 5.5656 0.0194 49 1 10.1353 4.2588 -1.1770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330652047.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:36 Heat of formation + Delta-G solvation = -85.782612 kcal Electronic energy + Delta-G solvation = -26226.486207 eV Core-core repulsion = 22574.023946 eV Total energy + Delta-G solvation = -3652.462261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.48794 -38.49521 -37.59515 -36.82103 -34.89916 -33.21595 -31.73262 -31.32672 -29.71383 -28.48541 -26.27718 -25.21037 -24.89111 -22.91193 -21.78418 -21.73134 -20.55522 -19.87878 -18.74077 -17.25993 -16.62678 -16.17708 -16.05738 -15.61955 -15.27284 -14.95259 -14.64129 -14.50422 -14.21696 -13.79571 -13.75375 -13.57197 -13.22331 -12.98346 -12.75143 -12.57956 -12.32171 -12.15932 -12.05487 -11.99918 -11.76713 -11.43504 -11.36124 -11.00809 -10.97392 -10.86800 -10.80323 -10.67822 -10.46478 -10.27170 -10.04136 -9.87023 -9.22653 -9.18932 -9.10097 -8.51490 -8.40327 -7.80680 -6.01642 -4.09600 1.81759 2.73001 3.30548 3.37651 3.40368 3.67033 3.97601 4.34420 4.42113 4.48792 4.55184 4.74259 4.87675 4.93727 5.11629 5.18248 5.21530 5.28996 5.31914 5.42915 5.57880 5.64983 5.67661 5.68857 5.71411 5.73236 5.73973 5.82646 5.91703 6.06295 6.07340 6.11507 6.28141 6.40839 6.61388 6.64512 6.77267 6.88426 7.00596 7.06952 7.19093 7.27349 7.59831 7.83820 7.96191 8.02178 8.18325 8.36260 8.59557 8.94481 9.55804 11.04112 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025620 B = 0.002587 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.620000 B =10820.781875 C =11651.793707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.088 4.088 4 H 0.074 0.926 5 C -0.154 4.154 6 C -0.130 4.130 7 C 0.115 3.885 8 N -0.705 5.705 9 C 0.511 3.489 10 O -0.515 6.515 11 C 0.494 3.506 12 O -0.526 6.526 13 N -0.567 5.567 14 C 0.050 3.950 15 C -0.127 4.127 16 C -0.113 4.113 17 C 0.041 3.959 18 H 0.030 0.970 19 C -0.519 4.519 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.883 5.883 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.108 3.892 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.413 0.587 41 H 0.144 0.856 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.264 0.736 48 H 0.048 0.952 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.396 -5.242 7.074 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.211 4.211 6 C -0.168 4.168 7 C -0.008 4.008 8 N -0.358 5.358 9 C 0.294 3.706 10 O -0.393 6.393 11 C 0.275 3.725 12 O -0.403 6.403 13 N -0.299 5.299 14 C -0.072 4.072 15 C -0.165 4.165 16 C -0.151 4.151 17 C 0.022 3.978 18 H 0.048 0.952 19 C -0.557 4.557 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.521 5.521 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.011 4.011 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.249 0.751 41 H 0.160 0.840 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.451 -5.235 6.960 22.228 hybrid contribution 1.360 -0.257 -0.170 1.394 sum -19.092 -5.492 6.790 20.994 Atomic orbital electron populations 1.21825 0.95859 1.01531 1.01952 1.21571 0.95940 0.96073 1.02163 1.21092 0.94178 0.96572 0.98901 0.90768 1.21978 1.01435 1.00765 0.96934 1.21888 0.95972 0.95754 1.03149 1.21536 0.79110 0.97566 1.02593 1.45860 1.07867 1.09402 1.72651 1.20774 0.89559 0.83882 0.76403 1.90296 1.69458 1.29853 1.49721 1.19776 0.87045 0.85278 0.80396 1.90753 1.69222 1.30761 1.49582 1.48444 1.11402 1.05439 1.64594 1.23078 1.02810 0.83956 0.97351 1.21852 0.98266 0.97894 0.98526 1.21667 0.92989 1.00104 1.00335 1.19052 0.95693 0.89376 0.93712 0.95231 1.21102 0.91978 0.95032 1.47596 0.92245 1.25068 0.98705 0.95401 0.94951 1.69879 1.35617 0.99522 1.47045 0.86561 0.85427 0.77864 0.77971 1.20626 1.21204 1.19911 1.22572 0.74010 1.06342 0.98219 0.92897 0.92748 0.92466 0.91907 0.91877 0.92390 0.92593 0.92237 0.90951 0.90882 0.91104 0.90849 0.75088 0.84007 0.92765 0.92348 0.92295 0.93085 0.93254 0.92645 0.93382 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 37.16 0.36 -0.50 16 2 C -0.12 -0.72 5.40 -26.73 -0.14 -0.87 16 3 C -0.09 -0.58 2.39 -90.62 -0.22 -0.79 16 4 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 5 C -0.15 -0.98 8.70 37.16 0.32 -0.66 16 6 C -0.13 -0.96 4.80 -26.73 -0.13 -1.09 16 7 C 0.12 1.14 5.43 -4.04 -0.02 1.12 16 8 N -0.70 -9.11 5.55 -60.73 -0.34 -9.45 16 9 C 0.51 8.55 7.78 -11.59 -0.09 8.46 16 10 O -0.52 -8.95 13.10 5.50 0.07 -8.88 16 11 C 0.49 10.13 7.74 -11.59 -0.09 10.04 16 12 O -0.53 -12.07 15.94 5.49 0.09 -11.99 16 13 N -0.57 -12.05 2.97 -173.01 -0.51 -12.57 16 14 C 0.05 0.90 6.27 -3.71 -0.02 0.88 16 15 C -0.13 -2.31 6.08 -26.61 -0.16 -2.47 16 16 C -0.11 -2.37 5.10 -26.69 -0.14 -2.51 16 17 C 0.04 1.03 2.26 -91.43 -0.21 0.82 16 18 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.52 -14.15 8.56 -34.44 -0.29 -14.45 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 22 N -0.88 -25.63 11.41 55.43 0.63 -24.99 16 23 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 27 C 0.11 2.67 5.41 -3.49 -0.02 2.65 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.30 6.57 -51.93 -0.34 -0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.73 6.56 -51.93 -0.34 0.39 16 40 H 0.41 5.02 7.96 -40.82 -0.32 4.69 16 41 H 0.14 2.51 3.78 -56.74 -0.21 2.29 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.12 3.44 5.20 -51.93 -0.27 3.17 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -30.57 380.24 -8.77 -39.34 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -8.48 Total: 4.30 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -0.94 Total: 2.25 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.22 Total: -47.01 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.16 Total: -20.87 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.57 -8.77 -39.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330652047.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.446 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds