Wall clock time and date at job start Tue Mar 31 2020 11:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 H 1.08999 * 109.47012 * 55.00504 * 3 2 1 5 5 C 1.52999 * 109.47474 * 295.00447 * 3 2 1 6 6 C 1.53003 * 109.47285 * 175.00104 * 3 2 1 7 7 C 1.53003 * 109.47214 * 185.00473 * 6 3 2 8 8 H 1.08998 * 109.46985 * 304.99953 * 7 6 3 9 9 C 1.53000 * 109.46987 * 184.99930 * 7 6 3 10 10 N 1.46500 * 109.47073 * 64.99899 * 7 6 3 11 11 C 1.34774 * 119.99630 * 205.00195 * 10 7 6 12 12 O 1.21349 * 120.00173 * 359.97438 * 11 10 7 13 13 C 1.49453 * 119.99846 * 180.02562 * 11 10 7 14 14 O 1.21353 * 120.00125 * 5.08748 * 13 11 10 15 15 N 1.34774 * 120.00102 * 185.09319 * 13 11 10 16 16 C 1.46494 * 120.00151 * 184.55658 * 15 13 11 17 17 C 1.53003 * 109.47491 * 184.70074 * 16 15 13 18 18 C 1.50708 * 115.54705 * 294.79992 * 17 16 15 19 19 H 1.07999 * 119.99435 * 121.52691 * 18 17 16 20 20 C 1.37869 * 119.99831 * 301.24568 * 18 17 16 21 21 N 1.31521 * 120.00014 * 173.16061 * 20 18 17 22 22 Si 1.86803 * 120.00258 * 353.16421 * 20 18 17 23 23 H 1.48495 * 109.47128 * 94.23742 * 22 20 18 24 24 H 1.48507 * 109.47100 * 214.23862 * 22 20 18 25 25 H 1.48500 * 109.46890 * 334.23636 * 22 20 18 26 26 C 1.53001 * 117.49727 * 80.46616 * 17 16 15 27 27 C 1.52994 * 117.50267 * 149.12521 * 17 16 15 28 28 H 1.08999 * 109.47520 * 299.99333 * 1 2 3 29 29 H 1.08997 * 109.47366 * 59.99738 * 1 2 3 30 30 H 1.09003 * 109.47029 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47294 * 240.00237 * 2 1 3 32 32 H 1.08997 * 109.47366 * 120.00262 * 2 1 3 33 33 H 1.09001 * 109.47279 * 59.99499 * 5 3 2 34 34 H 1.09003 * 109.47115 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.46608 * 299.99734 * 5 3 2 36 36 H 1.08994 * 109.47002 * 64.99902 * 6 3 2 37 37 H 1.09003 * 109.46670 * 305.00317 * 6 3 2 38 38 H 1.08999 * 109.47097 * 59.99751 * 9 7 6 39 39 H 1.09000 * 109.47203 * 179.97438 * 9 7 6 40 40 H 1.08998 * 109.47277 * 299.99844 * 9 7 6 41 41 H 0.96995 * 120.00213 * 25.00401 * 10 7 6 42 42 H 0.97001 * 120.00152 * 4.55797 * 15 13 11 43 43 H 1.08998 * 109.47592 * 64.70314 * 16 15 13 44 44 H 1.08995 * 109.47447 * 304.69904 * 16 15 13 45 45 H 0.97002 * 120.00052 * 180.02562 * 21 20 18 46 46 H 1.09004 * 117.49881 * 215.00573 * 26 17 16 47 47 H 1.08997 * 117.49907 * 0.02562 * 26 17 16 48 48 H 1.09000 * 117.50159 * 359.97438 * 27 17 16 49 49 H 1.08998 * 117.50086 * 144.97404 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 4.0644 2.8851 0.2512 8 1 3.6970 3.4717 -0.5908 9 6 5.5944 2.8961 0.2515 10 7 3.5716 3.4656 1.5028 11 6 3.4332 4.8013 1.6176 12 8 3.7172 5.5231 0.6844 13 6 2.9310 5.3935 2.8945 14 8 2.7357 4.6819 3.8579 15 7 2.6950 6.7179 2.9762 16 6 2.2988 7.3139 4.2544 17 6 1.9810 8.7964 4.0492 18 6 3.1459 9.6603 3.6396 19 1 3.1051 10.2195 2.7166 20 6 4.2613 9.7411 4.4460 21 7 5.3295 10.3847 4.0283 22 14 4.2553 8.9366 6.1319 23 1 4.8420 7.5761 6.0331 24 1 5.0598 9.7555 7.0740 25 1 2.8593 8.8389 6.6287 26 6 0.6045 9.1521 3.4838 27 6 0.9209 9.4239 4.9566 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.5488 2.1253 -1.3968 34 1 1.9980 3.1545 -1.3070 35 1 2.0698 1.5876 -2.1491 36 1 4.0029 0.9837 -0.7596 37 1 3.8570 0.8801 1.0113 38 1 5.9610 2.4642 -0.6797 39 1 5.9503 3.9225 0.3405 40 1 5.9618 2.3095 1.0935 41 1 3.3450 2.8886 2.2488 42 1 2.7874 7.2765 2.1886 43 1 3.1142 7.2130 4.9707 44 1 1.4151 6.8023 4.6355 45 1 6.1144 10.4412 4.5955 46 1 0.5414 10.0109 2.8155 47 1 -0.0748 8.3300 3.2584 48 1 0.4495 8.7804 5.6995 49 1 1.0662 10.4613 5.2576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342344728.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:34 Heat of formation + Delta-G solvation = -73.058368 kcal Electronic energy + Delta-G solvation = -26475.728181 eV Core-core repulsion = 22823.817685 eV Total energy + Delta-G solvation = -3651.910496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.43196 -38.74810 -37.59079 -37.01257 -35.18684 -33.51119 -32.21447 -31.55434 -29.84204 -27.45265 -27.10496 -25.58998 -24.45164 -23.44607 -21.63794 -20.99993 -20.11052 -20.00963 -19.43066 -18.08550 -16.75952 -16.42721 -15.79411 -15.57026 -15.39308 -15.11546 -14.91891 -14.77348 -14.03885 -13.87322 -13.81062 -13.42118 -13.18667 -12.98723 -12.85047 -12.70794 -12.40748 -12.31048 -12.27056 -12.16278 -11.98400 -11.62305 -11.40134 -11.22413 -11.07005 -10.86781 -10.75392 -10.72484 -10.60470 -10.50120 -10.30539 -9.64932 -9.29511 -9.22377 -9.17270 -8.89731 -8.51403 -8.45120 -6.19094 -4.20986 1.76519 2.66020 3.24583 3.35471 3.39810 3.56284 3.97405 4.29648 4.35190 4.56990 4.58638 4.73310 4.92842 4.96514 5.00546 5.08707 5.17034 5.18965 5.29406 5.32739 5.43127 5.53727 5.54747 5.59873 5.60012 5.71912 5.77649 5.80849 5.85437 5.88566 5.90390 6.08041 6.10729 6.11565 6.14870 6.17669 6.35380 6.38415 6.44297 6.64741 6.79780 6.89839 7.07478 7.24970 7.63602 7.81226 8.11223 8.39182 8.44710 8.83976 9.43566 10.91998 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.003295 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.193449 B = 8494.622349 C = 9094.345700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.096 4.096 4 H 0.074 0.926 5 C -0.152 4.152 6 C -0.122 4.122 7 C 0.137 3.863 8 H 0.095 0.905 9 C -0.166 4.166 10 N -0.701 5.701 11 C 0.509 3.491 12 O -0.514 6.514 13 C 0.496 3.504 14 O -0.542 6.542 15 N -0.665 5.665 16 C 0.149 3.851 17 C -0.018 4.018 18 C -0.491 4.491 19 H 0.080 0.920 20 C 0.083 3.917 21 N -0.888 5.888 22 Si 0.867 3.133 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.251 1.251 26 C -0.180 4.180 27 C -0.186 4.186 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.410 0.590 42 H 0.420 0.580 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.266 0.734 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 -19.750 -7.918 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.115 4.115 4 H 0.092 0.908 5 C -0.209 4.209 6 C -0.160 4.160 7 C 0.033 3.967 8 H 0.113 0.887 9 C -0.225 4.225 10 N -0.355 5.355 11 C 0.290 3.710 12 O -0.388 6.388 13 C 0.276 3.724 14 O -0.422 6.422 15 N -0.315 5.315 16 C 0.026 3.974 17 C -0.019 4.019 18 C -0.528 4.528 19 H 0.098 0.902 20 C -0.121 4.121 21 N -0.524 5.524 22 Si 0.695 3.305 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.175 1.175 26 C -0.217 4.217 27 C -0.225 4.225 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.246 0.754 42 H 0.257 0.743 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.105 0.895 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.716 -19.620 -7.875 21.900 hybrid contribution 0.203 -0.350 1.021 1.098 sum -5.513 -19.970 -6.854 21.821 Atomic orbital electron populations 1.21827 0.95913 1.01401 1.02098 1.21564 0.95988 0.96200 1.01823 1.21210 0.94906 0.96274 0.99087 0.90783 1.21944 1.01456 1.00781 0.96729 1.21972 0.95778 0.95215 1.03048 1.21147 0.94162 0.94245 0.87120 0.88705 1.22204 0.94998 1.03137 1.02122 1.45844 1.66051 1.06516 1.17102 1.20335 0.78969 0.83197 0.88486 1.90773 1.48327 1.59997 1.39694 1.20048 0.80149 0.83872 0.88351 1.90703 1.52460 1.60521 1.38469 1.45738 1.64412 1.06689 1.14667 1.21285 0.98729 0.93544 0.83814 1.19574 0.90379 0.90916 1.01065 1.20271 0.97298 1.26966 1.08298 0.90174 1.24930 0.94872 0.94427 0.97872 1.69898 1.03405 1.42037 1.37054 0.87048 0.79465 0.79096 0.84879 1.20466 1.21748 1.17477 1.22796 0.99764 1.02388 0.96725 1.23070 1.05597 1.01659 0.92125 0.92667 0.92484 0.92993 0.92094 0.92052 0.92485 0.92260 0.92729 0.90155 0.91149 0.91515 0.91657 0.92331 0.75445 0.74277 0.92081 0.92410 0.92395 0.89464 0.90818 0.91081 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.67 37.16 0.36 -0.73 16 2 C -0.12 -0.82 5.40 -26.73 -0.14 -0.96 16 3 C -0.10 -0.76 2.33 -90.62 -0.21 -0.98 16 4 H 0.07 0.69 7.62 -51.93 -0.40 0.30 16 5 C -0.15 -1.25 8.71 37.16 0.32 -0.93 16 6 C -0.12 -0.92 4.22 -26.73 -0.11 -1.03 16 7 C 0.14 1.41 2.44 -67.93 -0.17 1.24 16 8 H 0.10 1.09 5.78 -51.93 -0.30 0.79 16 9 C -0.17 -1.68 9.48 37.16 0.35 -1.33 16 10 N -0.70 -8.79 4.44 -54.23 -0.24 -9.03 16 11 C 0.51 8.42 7.85 -11.59 -0.09 8.33 16 12 O -0.51 -9.61 16.16 5.50 0.09 -9.53 16 13 C 0.50 9.36 7.88 -11.58 -0.09 9.27 16 14 O -0.54 -10.87 16.47 5.49 0.09 -10.78 16 15 N -0.66 -13.41 5.46 -60.73 -0.33 -13.74 16 16 C 0.15 3.19 5.08 -4.04 -0.02 3.17 16 17 C -0.02 -0.40 0.85 -155.66 -0.13 -0.53 16 18 C -0.49 -13.06 9.19 -34.44 -0.32 -13.37 16 19 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 20 C 0.08 2.31 5.46 -17.82 -0.10 2.21 16 21 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 22 Si 0.87 21.24 24.69 -169.99 -4.20 17.04 16 23 H -0.28 -6.91 6.96 56.52 0.39 -6.52 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.25 -5.75 6.11 56.52 0.35 -5.40 16 26 C -0.18 -3.44 9.96 -26.70 -0.27 -3.71 16 27 C -0.19 -3.74 8.69 -26.70 -0.23 -3.97 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.40 6.56 -51.93 -0.34 0.05 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 34 H 0.06 0.57 6.46 -51.93 -0.34 0.24 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.41 4.69 8.08 -40.82 -0.33 4.36 16 42 H 0.42 8.55 7.83 -40.82 -0.32 8.23 16 43 H 0.06 1.43 4.27 -51.93 -0.22 1.21 16 44 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 48 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -30.35 390.17 -7.33 -37.67 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -8.54 Total: 11.41 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -0.85 Total: -3.31 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.20 Total: -48.39 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.18 Total: -20.30 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.20 Total: 17.04 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.35 -7.33 -37.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342344728.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.386 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds