Wall clock time and date at job start Tue Mar 31 2020 11:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 H 1.08999 * 109.47012 * 55.00504 * 3 2 1 5 5 C 1.52999 * 109.47474 * 295.00447 * 3 2 1 6 6 C 1.53003 * 109.47285 * 175.00104 * 3 2 1 7 7 C 1.53003 * 109.47214 * 185.00473 * 6 3 2 8 8 H 1.08998 * 109.46985 * 304.99953 * 7 6 3 9 9 C 1.53000 * 109.46987 * 184.99930 * 7 6 3 10 10 N 1.46500 * 109.47073 * 64.99899 * 7 6 3 11 11 C 1.34774 * 119.99630 * 205.00195 * 10 7 6 12 12 O 1.21349 * 120.00173 * 359.97438 * 11 10 7 13 13 C 1.49453 * 119.99846 * 180.02562 * 11 10 7 14 14 O 1.21353 * 120.00125 * 5.08748 * 13 11 10 15 15 N 1.34774 * 120.00102 * 185.09319 * 13 11 10 16 16 C 1.46494 * 120.00151 * 184.55658 * 15 13 11 17 17 C 1.53003 * 109.47491 * 184.70074 * 16 15 13 18 18 C 1.50708 * 115.54705 * 294.79992 * 17 16 15 19 19 H 1.07999 * 119.99435 * 121.52691 * 18 17 16 20 20 C 1.37869 * 119.99831 * 301.24568 * 18 17 16 21 21 N 1.31521 * 120.00014 * 173.16061 * 20 18 17 22 22 Si 1.86803 * 120.00258 * 353.16421 * 20 18 17 23 23 H 1.48495 * 109.47128 * 94.23742 * 22 20 18 24 24 H 1.48507 * 109.47100 * 214.23862 * 22 20 18 25 25 H 1.48500 * 109.46890 * 334.23636 * 22 20 18 26 26 C 1.53001 * 117.49727 * 80.46616 * 17 16 15 27 27 C 1.52994 * 117.50267 * 149.12521 * 17 16 15 28 28 H 1.08999 * 109.47520 * 299.99333 * 1 2 3 29 29 H 1.08997 * 109.47366 * 59.99738 * 1 2 3 30 30 H 1.09003 * 109.47029 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47294 * 240.00237 * 2 1 3 32 32 H 1.08997 * 109.47366 * 120.00262 * 2 1 3 33 33 H 1.09001 * 109.47279 * 59.99499 * 5 3 2 34 34 H 1.09003 * 109.47115 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.46608 * 299.99734 * 5 3 2 36 36 H 1.08994 * 109.47002 * 64.99902 * 6 3 2 37 37 H 1.09003 * 109.46670 * 305.00317 * 6 3 2 38 38 H 1.08999 * 109.47097 * 59.99751 * 9 7 6 39 39 H 1.09000 * 109.47203 * 179.97438 * 9 7 6 40 40 H 1.08998 * 109.47277 * 299.99844 * 9 7 6 41 41 H 0.96995 * 120.00213 * 25.00401 * 10 7 6 42 42 H 0.97001 * 120.00152 * 4.55797 * 15 13 11 43 43 H 1.08998 * 109.47592 * 64.70314 * 16 15 13 44 44 H 1.08995 * 109.47447 * 304.69904 * 16 15 13 45 45 H 0.97002 * 120.00052 * 180.02562 * 21 20 18 46 46 H 1.09004 * 117.49881 * 215.00573 * 26 17 16 47 47 H 1.08997 * 117.49907 * 0.02562 * 26 17 16 48 48 H 1.09000 * 117.50159 * 359.97438 * 27 17 16 49 49 H 1.08998 * 117.50086 * 144.97404 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 4.0644 2.8851 0.2512 8 1 3.6970 3.4717 -0.5908 9 6 5.5944 2.8961 0.2515 10 7 3.5716 3.4656 1.5028 11 6 3.4332 4.8013 1.6176 12 8 3.7172 5.5231 0.6844 13 6 2.9310 5.3935 2.8945 14 8 2.7357 4.6819 3.8579 15 7 2.6950 6.7179 2.9762 16 6 2.2988 7.3139 4.2544 17 6 1.9810 8.7964 4.0492 18 6 3.1459 9.6603 3.6396 19 1 3.1051 10.2195 2.7166 20 6 4.2613 9.7411 4.4460 21 7 5.3295 10.3847 4.0283 22 14 4.2553 8.9366 6.1319 23 1 4.8420 7.5761 6.0331 24 1 5.0598 9.7555 7.0740 25 1 2.8593 8.8389 6.6287 26 6 0.6045 9.1521 3.4838 27 6 0.9209 9.4239 4.9566 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.5488 2.1253 -1.3968 34 1 1.9980 3.1545 -1.3070 35 1 2.0698 1.5876 -2.1491 36 1 4.0029 0.9837 -0.7596 37 1 3.8570 0.8801 1.0113 38 1 5.9610 2.4642 -0.6797 39 1 5.9503 3.9225 0.3405 40 1 5.9618 2.3095 1.0935 41 1 3.3450 2.8886 2.2488 42 1 2.7874 7.2765 2.1886 43 1 3.1142 7.2130 4.9707 44 1 1.4151 6.8023 4.6355 45 1 6.1144 10.4412 4.5955 46 1 0.5414 10.0109 2.8155 47 1 -0.0748 8.3300 3.2584 48 1 0.4495 8.7804 5.6995 49 1 1.0662 10.4613 5.2576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342344728.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:33 Heat of formation + Delta-G solvation = -93.369280 kcal Electronic energy + Delta-G solvation = -26476.608928 eV Core-core repulsion = 22823.817685 eV Total energy + Delta-G solvation = -3652.791243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.77907 -40.06034 -38.73389 -38.49416 -36.14436 -35.02926 -34.31050 -32.51281 -30.52572 -29.09230 -27.77986 -27.51267 -25.51736 -24.46813 -23.20154 -21.90842 -21.45877 -21.13802 -20.72332 -19.61864 -18.30597 -18.00052 -17.27391 -16.97231 -16.58809 -16.28616 -16.00861 -15.83660 -15.41573 -15.31377 -14.90266 -14.74867 -14.63057 -14.18638 -14.11939 -13.92249 -13.62757 -13.41130 -13.15194 -13.02719 -12.92572 -12.75246 -12.67716 -12.65475 -12.24318 -12.17964 -12.09891 -11.97005 -11.51269 -11.49933 -11.34513 -11.18717 -11.09440 -10.77277 -10.75958 -10.36546 -10.28425 -10.09703 -8.33368 -6.37139 0.34463 1.28761 1.34484 1.36895 1.46371 2.13589 2.31536 2.63653 2.97666 3.33304 3.48750 3.62251 3.90159 3.94115 3.98266 4.22756 4.25914 4.27726 4.36639 4.41742 4.45984 4.51094 4.66926 4.67889 4.69715 4.76004 4.82916 4.89879 4.91587 4.94022 5.01339 5.03681 5.16846 5.19499 5.21079 5.25329 5.25864 5.28026 5.31285 5.36503 5.52095 5.56124 5.57706 5.65394 5.98857 6.26866 6.40513 6.69252 6.75730 6.95587 7.29999 8.81600 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.003295 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.193449 B = 8494.622349 C = 9094.345700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.095 4.095 4 H 0.057 0.943 5 C -0.151 4.151 6 C -0.113 4.113 7 C 0.133 3.867 8 H 0.082 0.918 9 C -0.164 4.164 10 N -0.680 5.680 11 C 0.511 3.489 12 O -0.542 6.542 13 C 0.495 3.505 14 O -0.553 6.553 15 N -0.673 5.673 16 C 0.155 3.845 17 C -0.047 4.047 18 C -0.482 4.482 19 H 0.040 0.960 20 C 0.029 3.971 21 N -0.940 5.940 22 Si 0.922 3.078 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.221 1.221 26 C -0.158 4.158 27 C -0.175 4.175 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.033 0.967 40 H 0.068 0.932 41 H 0.417 0.583 42 H 0.416 0.584 43 H 0.040 0.960 44 H 0.080 0.920 45 H 0.265 0.735 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.099 0.901 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 -22.602 -7.459 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.114 4.114 4 H 0.075 0.925 5 C -0.208 4.208 6 C -0.150 4.150 7 C 0.030 3.970 8 H 0.100 0.900 9 C -0.222 4.222 10 N -0.333 5.333 11 C 0.291 3.709 12 O -0.419 6.419 13 C 0.276 3.724 14 O -0.432 6.432 15 N -0.323 5.323 16 C 0.032 3.968 17 C -0.048 4.048 18 C -0.520 4.520 19 H 0.058 0.942 20 C -0.169 4.169 21 N -0.579 5.579 22 Si 0.748 3.252 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.143 1.143 26 C -0.195 4.195 27 C -0.213 4.213 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.255 0.745 42 H 0.253 0.747 43 H 0.058 0.942 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.250 -22.519 -7.409 24.790 hybrid contribution 0.628 0.514 0.762 1.113 sum -6.622 -22.004 -6.647 23.921 Atomic orbital electron populations 1.21840 0.96206 1.01776 1.01589 1.21532 0.95715 0.95283 1.02619 1.21189 0.95165 0.96896 0.98149 0.92478 1.21933 1.01462 0.99881 0.97540 1.21949 0.95376 0.93034 1.04681 1.21384 0.94460 0.95768 0.85350 0.89954 1.22187 0.94535 1.01511 1.03935 1.45873 1.64183 1.05073 1.18204 1.19998 0.79218 0.84349 0.87288 1.90767 1.50082 1.60880 1.40209 1.20433 0.79451 0.83402 0.89100 1.90684 1.52824 1.60621 1.39089 1.45783 1.64994 1.07257 1.14246 1.21159 0.98779 0.93010 0.83893 1.19432 0.90121 0.90834 1.04443 1.20418 0.98866 1.26263 1.06417 0.94170 1.25666 0.94617 0.95255 1.01391 1.70036 1.04400 1.44828 1.38642 0.86173 0.80851 0.77394 0.80791 1.21259 1.22166 1.14314 1.22851 0.97550 1.02866 0.96246 1.23117 1.03471 1.01554 0.93200 0.93578 0.92636 0.92183 0.91004 0.91492 0.92593 0.94147 0.91409 0.88027 0.89810 0.89067 0.94813 0.91307 0.74545 0.74705 0.94172 0.90162 0.92589 0.89876 0.87970 0.88258 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.67 71.98 0.70 -1.22 16 2 C -0.11 -1.27 5.40 30.59 0.17 -1.11 16 3 C -0.10 -1.32 2.33 -10.79 -0.03 -1.35 16 4 H 0.06 0.99 7.62 -2.39 -0.02 0.97 16 5 C -0.15 -2.28 8.71 71.98 0.63 -1.65 16 6 C -0.11 -1.38 4.22 30.60 0.13 -1.25 16 7 C 0.13 2.56 2.44 44.99 0.11 2.67 16 8 H 0.08 1.85 5.78 -2.39 -0.01 1.84 16 9 C -0.16 -3.07 9.48 71.98 0.68 -2.38 16 10 N -0.68 -16.43 4.44 -443.86 -1.97 -18.40 16 11 C 0.51 16.89 7.85 87.27 0.69 17.58 16 12 O -0.54 -20.75 16.16 -3.24 -0.05 -20.80 16 13 C 0.50 18.46 7.88 87.27 0.69 19.14 16 14 O -0.55 -21.43 16.47 -3.26 -0.05 -21.49 16 15 N -0.67 -26.96 5.46 -464.42 -2.54 -29.50 16 16 C 0.15 6.37 5.08 86.38 0.44 6.81 16 17 C -0.05 -2.03 0.85 -52.93 -0.04 -2.07 16 18 C -0.48 -26.16 9.19 25.60 0.24 -25.93 16 19 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 20 C 0.03 1.67 5.46 84.65 0.46 2.14 16 21 N -0.94 -58.05 13.96 21.45 0.30 -57.76 16 22 Si 0.92 44.04 24.69 68.60 1.69 45.73 16 23 H -0.29 -13.89 6.96 99.48 0.69 -13.20 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.22 -9.34 6.11 99.48 0.61 -8.74 16 26 C -0.16 -5.68 9.96 30.62 0.30 -5.37 16 27 C -0.18 -6.51 8.69 30.62 0.27 -6.24 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.69 6.56 -2.39 -0.02 0.67 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.84 6.56 -2.39 -0.02 0.83 16 34 H 0.04 0.76 6.46 -2.39 -0.02 0.74 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.42 8.90 8.08 -92.71 -0.75 8.15 16 42 H 0.42 17.26 7.83 -92.71 -0.73 16.53 16 43 H 0.04 1.83 4.27 -2.39 -0.01 1.82 16 44 H 0.08 2.93 8.06 -2.39 -0.02 2.91 16 45 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 46 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 47 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 48 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 49 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -67.55 390.17 2.16 -65.39 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: -0.64 Total: 37.08 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.42 Total: -0.26 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -4.21 Total: -105.66 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.11 Total: -42.29 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.69 Total: 45.73 kcal Total: -67.55 2.16 -65.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342344728.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.980 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds