Wall clock time and date at job start Tue Mar 31 2020 10:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47360 * 2 1 4 4 H 1.09001 * 109.46660 * 304.99977 * 3 2 1 5 5 C 1.52995 * 109.47058 * 64.99663 * 3 2 1 6 6 C 1.53003 * 109.46953 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.47120 * 300.00231 * 6 5 3 8 8 H 1.08999 * 109.46708 * 300.00090 * 7 6 5 9 9 C 1.50694 * 109.47147 * 180.02562 * 7 6 5 10 10 O 1.21279 * 119.99723 * 239.99956 * 9 7 6 11 11 N 1.34774 * 120.00423 * 59.99287 * 9 7 6 12 12 C 1.46501 * 119.99939 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.46886 * 180.02562 * 12 11 9 14 14 O 1.42900 * 113.28618 * 51.93188 * 13 12 11 15 15 C 1.53493 * 114.20426 * 185.00287 * 13 12 11 16 16 N 1.47060 * 87.98914 * 87.71209 * 15 13 12 17 17 C 1.36935 * 136.05988 * 207.08611 * 16 15 13 18 18 H 1.08005 * 119.99877 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00369 * 179.72694 * 17 16 15 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47154 * 89.99247 * 21 19 17 23 23 H 1.48496 * 109.47375 * 209.99772 * 21 19 17 24 24 H 1.48502 * 109.46736 * 329.99467 * 21 19 17 25 25 C 1.47066 * 87.88562 * 27.34336 * 16 15 13 26 26 C 1.52996 * 109.47047 * 59.99897 * 7 6 5 27 27 C 1.52999 * 109.47142 * 185.00119 * 3 2 1 28 28 H 1.09002 * 109.47376 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47564 * 300.00175 * 1 2 3 30 30 H 1.09000 * 109.47276 * 60.00480 * 1 2 3 31 31 H 1.09004 * 109.47080 * 239.99608 * 2 1 3 32 32 H 1.09005 * 109.47060 * 120.00414 * 2 1 3 33 33 H 1.08999 * 109.47644 * 300.00308 * 5 3 2 34 34 H 1.09001 * 109.47129 * 60.00601 * 5 3 2 35 35 H 1.09002 * 109.46925 * 180.02562 * 6 5 3 36 36 H 1.08999 * 109.47403 * 59.99896 * 6 5 3 37 37 H 0.97002 * 119.99640 * 0.02562 * 11 9 7 38 38 H 1.08997 * 109.47651 * 60.00673 * 12 11 9 39 39 H 1.08998 * 109.46994 * 299.99873 * 12 11 9 40 40 H 0.96700 * 113.99557 * 313.06670 * 14 13 12 41 41 H 1.08999 * 113.46842 * 332.93132 * 15 13 12 42 42 H 1.08999 * 113.46484 * 202.49533 * 15 13 12 43 43 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 44 44 H 1.08995 * 113.47095 * 87.43770 * 25 16 15 45 45 H 1.09002 * 113.46562 * 217.88366 * 25 16 15 46 46 H 1.09001 * 109.47186 * 59.99948 * 26 7 6 47 47 H 1.08999 * 109.47295 * 180.02562 * 26 7 6 48 48 H 1.09001 * 109.47303 * 59.99586 * 27 3 2 49 49 H 1.08999 * 109.46765 * 299.99766 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1447 3.5692 1.3070 7 6 3.6696 3.5715 1.1810 8 1 4.1045 3.0327 2.0228 9 6 4.1715 4.9924 1.1813 10 8 4.7918 5.4166 0.2294 11 7 3.9310 5.7919 2.2393 12 6 4.4185 7.1734 2.2393 13 6 4.0143 7.8568 3.5472 14 8 4.3873 7.1157 4.7106 15 6 4.3661 9.3495 3.6122 16 7 3.0694 9.6297 2.9776 17 6 2.5529 10.6198 2.1851 18 1 3.1717 11.4554 1.8927 19 6 1.2357 10.5470 1.7532 20 7 0.4833 9.5260 2.1051 21 14 0.5314 11.8972 0.6714 22 1 0.7576 11.5564 -0.7561 23 1 -0.9262 12.0249 0.9250 24 1 1.2030 13.1839 0.9856 25 6 2.5694 8.3820 3.5742 26 6 4.0743 2.8874 -0.1263 27 6 3.5648 1.4442 -0.1258 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.5489 2.1252 1.3969 34 1 2.0699 1.5875 2.1491 35 1 1.8567 4.0564 2.2386 36 1 1.7099 4.1080 0.4652 37 1 3.4351 5.4525 3.0008 38 1 3.9832 7.7124 1.3978 39 1 5.5047 7.1754 2.1493 40 1 4.1643 6.1758 4.6664 41 1 5.2205 9.6215 2.9923 42 1 4.4436 9.7333 4.6294 43 1 -0.4371 9.4749 1.8030 44 1 2.1732 8.5107 4.5814 45 1 1.8930 7.8296 2.9220 46 1 3.6394 3.4262 -0.9681 47 1 5.1606 2.8886 -0.2159 48 1 3.8532 0.9568 -1.0571 49 1 3.9994 0.9052 0.7161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699923536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:48 Heat of formation + Delta-G solvation = -59.685762 kcal Electronic energy + Delta-G solvation = -26765.344247 eV Core-core repulsion = 23114.013630 eV Total energy + Delta-G solvation = -3651.330616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.26907 -39.09992 -38.01092 -35.11283 -34.10117 -33.91846 -32.04819 -30.95269 -29.63090 -28.07853 -26.24867 -24.81394 -24.22227 -22.78756 -22.35896 -21.34832 -20.17391 -19.81458 -18.99277 -17.65937 -16.79905 -16.13908 -15.89977 -15.42194 -15.05546 -14.83300 -14.58998 -14.23206 -14.06274 -13.95049 -13.67488 -13.51129 -13.37546 -12.89458 -12.83799 -12.50168 -12.24980 -12.08504 -11.93957 -11.76389 -11.69066 -11.37676 -11.22088 -11.08208 -11.01726 -10.94984 -10.89740 -10.65402 -10.49341 -10.41350 -10.10632 -10.07171 -9.60366 -9.49290 -9.04657 -8.87115 -8.75342 -6.98221 -5.83628 -3.17274 2.84523 3.33742 3.37469 3.41985 3.43701 4.32177 4.43670 4.47287 4.56480 4.64163 4.85009 4.85460 4.96818 5.09742 5.14587 5.19901 5.24224 5.29767 5.30518 5.33957 5.38166 5.42663 5.49022 5.55517 5.67590 5.71418 5.78580 5.87313 5.93784 5.94828 6.01117 6.05053 6.10969 6.15142 6.24140 6.28040 6.36838 6.43480 6.50004 6.57001 6.66247 7.03151 7.09876 7.42834 7.66069 7.88121 8.01637 8.43420 8.96355 9.62960 10.53182 11.33603 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.003405 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.986346 B = 8221.518409 C = 9220.254761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.092 4.092 4 H 0.071 0.929 5 C -0.112 4.112 6 C -0.113 4.113 7 C -0.103 4.103 8 H 0.094 0.906 9 C 0.516 3.484 10 O -0.541 6.541 11 N -0.724 5.724 12 C 0.129 3.871 13 C 0.050 3.950 14 O -0.552 6.552 15 C 0.138 3.862 16 N -0.602 5.602 17 C -0.218 4.218 18 H 0.084 0.916 19 C -0.005 4.005 20 N -0.918 5.918 21 Si 0.915 3.085 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.138 3.862 26 C -0.099 4.099 27 C -0.113 4.113 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.394 0.606 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.362 0.638 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.254 0.746 44 H 0.033 0.967 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.321 -19.980 -0.212 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.110 4.110 4 H 0.090 0.910 5 C -0.149 4.149 6 C -0.151 4.151 7 C -0.125 4.125 8 H 0.112 0.888 9 C 0.302 3.698 10 O -0.418 6.418 11 N -0.376 5.376 12 C 0.005 3.995 13 C 0.008 3.992 14 O -0.355 6.355 15 C 0.011 3.989 16 N -0.329 5.329 17 C -0.345 4.345 18 H 0.102 0.898 19 C -0.202 4.202 20 N -0.565 5.565 21 Si 0.745 3.255 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.011 3.989 26 C -0.137 4.137 27 C -0.150 4.150 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.229 0.771 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.208 0.792 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.734 -18.874 -0.909 19.261 hybrid contribution -0.981 0.156 -0.172 1.008 sum 2.752 -18.717 -1.081 18.949 Atomic orbital electron populations 1.21835 0.95970 1.01340 1.02123 1.21561 0.95865 0.96435 1.01753 1.21247 0.95595 0.95721 0.98444 0.91030 1.21617 1.00972 0.94942 0.97385 1.21553 0.92868 0.97526 1.03105 1.21340 0.97455 0.92828 1.00856 0.88800 1.20613 0.79407 0.87643 0.82093 1.90695 1.40762 1.76036 1.34278 1.45924 1.57824 1.13293 1.20559 1.21495 0.98880 0.80707 0.98397 1.23922 0.99790 0.92188 0.83344 1.86574 1.85090 1.23603 1.40227 1.22331 0.91097 0.88462 0.97020 1.45229 1.08105 1.24720 1.54888 1.18896 0.94897 0.99447 1.21282 0.89791 1.24804 0.96179 0.98465 1.00755 1.69816 1.07753 1.30289 1.48613 0.86076 0.78237 0.80973 0.80229 1.21370 1.21572 1.20550 1.22771 0.91846 0.87417 0.96840 1.21340 1.01303 0.94765 0.96268 1.21614 0.95103 0.96506 1.01803 0.93080 0.92343 0.92767 0.92198 0.92112 0.91341 0.91850 0.91182 0.91082 0.77141 0.88858 0.91552 0.79198 0.93358 0.93566 0.93591 0.94898 0.90642 0.91132 0.91340 0.91830 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -0.85 5.40 -26.73 -0.14 -0.99 16 3 C -0.09 -0.76 2.19 -90.62 -0.20 -0.96 16 4 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 5 C -0.11 -0.94 4.96 -26.73 -0.13 -1.07 16 6 C -0.11 -1.16 5.10 -26.73 -0.14 -1.30 16 7 C -0.10 -1.13 2.52 -91.77 -0.23 -1.37 16 8 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 9 C 0.52 7.83 7.15 -10.99 -0.08 7.75 16 10 O -0.54 -10.49 15.98 5.56 0.09 -10.40 16 11 N -0.72 -10.51 5.21 -60.29 -0.31 -10.83 16 12 C 0.13 2.31 5.33 -4.04 -0.02 2.29 16 13 C 0.05 0.93 1.73 -89.97 -0.16 0.77 16 14 O -0.55 -8.92 13.55 -35.23 -0.48 -9.40 16 15 C 0.14 2.91 8.10 -8.52 -0.07 2.84 16 16 N -0.60 -15.33 3.56 -184.60 -0.66 -15.99 16 17 C -0.22 -6.08 10.75 -15.06 -0.16 -6.25 16 18 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 20 N -0.92 -26.78 11.49 55.49 0.64 -26.14 16 21 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.14 3.16 6.85 -8.37 -0.06 3.10 16 26 C -0.10 -1.08 4.50 -26.71 -0.12 -1.20 16 27 C -0.11 -0.95 5.21 -26.71 -0.14 -1.09 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.56 6.56 -51.93 -0.34 0.22 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.69 7.56 -51.93 -0.39 0.30 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.39 4.60 6.66 -40.82 -0.27 4.32 16 38 H 0.09 2.05 7.95 -51.93 -0.41 1.64 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.36 4.27 7.50 45.56 0.34 4.61 16 41 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.88 7.08 -51.93 -0.37 1.51 16 46 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 47 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 381.82 15.07 5.75 5.75 Total: -1.00 -32.65 381.82 -9.47 -42.12 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -8.09 Total: 6.24 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.38 Total: 1.56 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.33 Total: -52.96 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.39 Total: -19.79 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.65 -9.47 -42.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699923536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.567 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds