Wall clock time and date at job start Tue Mar 31 2020 10:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47360 * 2 1 4 4 H 1.09001 * 109.46660 * 304.99977 * 3 2 1 5 5 C 1.52995 * 109.47058 * 64.99663 * 3 2 1 6 6 C 1.53003 * 109.46953 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.47120 * 300.00231 * 6 5 3 8 8 H 1.08999 * 109.46708 * 300.00090 * 7 6 5 9 9 C 1.50694 * 109.47147 * 180.02562 * 7 6 5 10 10 O 1.21279 * 119.99723 * 239.99956 * 9 7 6 11 11 N 1.34774 * 120.00423 * 59.99287 * 9 7 6 12 12 C 1.46501 * 119.99939 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.46886 * 180.02562 * 12 11 9 14 14 O 1.42900 * 113.28618 * 51.93188 * 13 12 11 15 15 C 1.53493 * 114.20426 * 185.00287 * 13 12 11 16 16 N 1.47060 * 87.98914 * 87.71209 * 15 13 12 17 17 C 1.36935 * 136.05988 * 207.08611 * 16 15 13 18 18 H 1.08005 * 119.99877 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00369 * 179.72694 * 17 16 15 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47154 * 89.99247 * 21 19 17 23 23 H 1.48496 * 109.47375 * 209.99772 * 21 19 17 24 24 H 1.48502 * 109.46736 * 329.99467 * 21 19 17 25 25 C 1.47066 * 87.88562 * 27.34336 * 16 15 13 26 26 C 1.52996 * 109.47047 * 59.99897 * 7 6 5 27 27 C 1.52999 * 109.47142 * 185.00119 * 3 2 1 28 28 H 1.09002 * 109.47376 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47564 * 300.00175 * 1 2 3 30 30 H 1.09000 * 109.47276 * 60.00480 * 1 2 3 31 31 H 1.09004 * 109.47080 * 239.99608 * 2 1 3 32 32 H 1.09005 * 109.47060 * 120.00414 * 2 1 3 33 33 H 1.08999 * 109.47644 * 300.00308 * 5 3 2 34 34 H 1.09001 * 109.47129 * 60.00601 * 5 3 2 35 35 H 1.09002 * 109.46925 * 180.02562 * 6 5 3 36 36 H 1.08999 * 109.47403 * 59.99896 * 6 5 3 37 37 H 0.97002 * 119.99640 * 0.02562 * 11 9 7 38 38 H 1.08997 * 109.47651 * 60.00673 * 12 11 9 39 39 H 1.08998 * 109.46994 * 299.99873 * 12 11 9 40 40 H 0.96700 * 113.99557 * 313.06670 * 14 13 12 41 41 H 1.08999 * 113.46842 * 332.93132 * 15 13 12 42 42 H 1.08999 * 113.46484 * 202.49533 * 15 13 12 43 43 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 44 44 H 1.08995 * 113.47095 * 87.43770 * 25 16 15 45 45 H 1.09002 * 113.46562 * 217.88366 * 25 16 15 46 46 H 1.09001 * 109.47186 * 59.99948 * 26 7 6 47 47 H 1.08999 * 109.47295 * 180.02562 * 26 7 6 48 48 H 1.09001 * 109.47303 * 59.99586 * 27 3 2 49 49 H 1.08999 * 109.46765 * 299.99766 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1447 3.5692 1.3070 7 6 3.6696 3.5715 1.1810 8 1 4.1045 3.0327 2.0228 9 6 4.1715 4.9924 1.1813 10 8 4.7918 5.4166 0.2294 11 7 3.9310 5.7919 2.2393 12 6 4.4185 7.1734 2.2393 13 6 4.0143 7.8568 3.5472 14 8 4.3873 7.1157 4.7106 15 6 4.3661 9.3495 3.6122 16 7 3.0694 9.6297 2.9776 17 6 2.5529 10.6198 2.1851 18 1 3.1717 11.4554 1.8927 19 6 1.2357 10.5470 1.7532 20 7 0.4833 9.5260 2.1051 21 14 0.5314 11.8972 0.6714 22 1 0.7576 11.5564 -0.7561 23 1 -0.9262 12.0249 0.9250 24 1 1.2030 13.1839 0.9856 25 6 2.5694 8.3820 3.5742 26 6 4.0743 2.8874 -0.1263 27 6 3.5648 1.4442 -0.1258 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.5489 2.1252 1.3969 34 1 2.0699 1.5875 2.1491 35 1 1.8567 4.0564 2.2386 36 1 1.7099 4.1080 0.4652 37 1 3.4351 5.4525 3.0008 38 1 3.9832 7.7124 1.3978 39 1 5.5047 7.1754 2.1493 40 1 4.1643 6.1758 4.6664 41 1 5.2205 9.6215 2.9923 42 1 4.4436 9.7333 4.6294 43 1 -0.4371 9.4749 1.8030 44 1 2.1732 8.5107 4.5814 45 1 1.8930 7.8296 2.9220 46 1 3.6394 3.4262 -0.9681 47 1 5.1606 2.8886 -0.2159 48 1 3.8532 0.9568 -1.0571 49 1 3.9994 0.9052 0.7161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699923536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:47 Heat of formation + Delta-G solvation = -82.369651 kcal Electronic energy + Delta-G solvation = -26766.327894 eV Core-core repulsion = 23114.013630 eV Total energy + Delta-G solvation = -3652.314264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.50714 -40.54504 -39.04573 -36.71637 -35.34450 -34.80032 -34.08110 -31.75738 -30.55304 -29.71693 -27.85286 -26.57739 -25.17769 -24.11763 -23.57371 -22.29248 -21.17130 -20.74615 -20.54027 -18.97442 -18.69977 -17.55974 -17.20914 -16.73511 -16.53605 -15.95924 -15.73572 -15.59305 -15.45375 -14.94513 -14.82215 -14.70466 -14.36214 -14.35319 -14.04780 -13.64290 -13.60310 -13.38426 -13.04897 -12.99547 -12.82832 -12.81356 -12.74031 -12.44544 -12.21562 -12.11312 -11.99295 -11.94294 -11.62792 -11.55226 -11.34984 -11.21197 -10.96046 -10.82061 -10.70193 -10.62729 -10.15673 -9.01719 -7.96538 -5.31065 1.43499 1.45653 1.53679 1.61225 2.09516 2.40629 3.06237 3.24419 3.40379 3.50071 3.60292 3.71996 3.77237 3.82480 4.06716 4.14925 4.21111 4.36476 4.44255 4.47010 4.56721 4.59875 4.63305 4.66564 4.75176 4.78566 4.82266 4.83113 4.88827 4.97090 5.08151 5.13949 5.17274 5.21108 5.24004 5.27981 5.28576 5.30552 5.33026 5.38465 5.42743 5.43479 5.58327 5.66677 5.83909 6.47013 6.76689 6.84474 7.22127 7.52637 8.50155 9.20402 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.003405 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.986346 B = 8221.518409 C = 9220.254761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.092 4.092 4 H 0.053 0.947 5 C -0.106 4.106 6 C -0.111 4.111 7 C -0.092 4.092 8 H 0.130 0.870 9 C 0.511 3.489 10 O -0.588 6.588 11 N -0.713 5.713 12 C 0.142 3.858 13 C 0.091 3.909 14 O -0.545 6.545 15 C 0.132 3.868 16 N -0.631 5.631 17 C -0.231 4.231 18 H 0.087 0.913 19 C -0.062 4.062 20 N -0.947 5.947 21 Si 0.979 3.021 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.267 1.267 25 C 0.137 3.863 26 C -0.098 4.098 27 C -0.104 4.104 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.411 0.589 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.386 0.614 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.249 0.751 44 H 0.022 0.978 45 H 0.050 0.950 46 H 0.042 0.958 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.983 -21.844 0.942 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.110 4.110 4 H 0.071 0.929 5 C -0.143 4.143 6 C -0.149 4.149 7 C -0.113 4.113 8 H 0.148 0.852 9 C 0.300 3.700 10 O -0.468 6.468 11 N -0.366 5.366 12 C 0.017 3.983 13 C 0.048 3.952 14 O -0.351 6.351 15 C 0.005 3.995 16 N -0.359 5.359 17 C -0.359 4.359 18 H 0.105 0.895 19 C -0.255 4.255 20 N -0.595 5.595 21 Si 0.807 3.193 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.192 1.192 25 C 0.011 3.989 26 C -0.136 4.136 27 C -0.142 4.142 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.248 0.752 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.236 0.764 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.040 0.960 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.407 -20.771 0.289 21.236 hybrid contribution -1.145 0.724 -0.499 1.444 sum 3.262 -20.048 -0.210 20.312 Atomic orbital electron populations 1.21848 0.96099 1.01755 1.01723 1.21520 0.95709 0.95396 1.02496 1.21233 0.95484 0.96489 0.97817 0.92861 1.21600 1.01192 0.93392 0.98148 1.21548 0.92190 0.98975 1.02173 1.21378 0.97784 0.89919 1.02209 0.85229 1.21464 0.78316 0.89143 0.81092 1.90675 1.42935 1.77213 1.35934 1.45798 1.57685 1.11839 1.21319 1.21117 0.98968 0.81989 0.96207 1.23152 0.95990 0.91698 0.84362 1.86539 1.84565 1.25502 1.38519 1.22486 0.89782 0.90070 0.97112 1.45491 1.10201 1.24989 1.55198 1.19270 0.95248 1.00008 1.21374 0.89486 1.25623 0.96665 1.00763 1.02459 1.69985 1.07625 1.31945 1.49969 0.85073 0.77179 0.78864 0.78191 1.21421 1.21760 1.19188 1.22728 0.93948 0.86970 0.95270 1.21324 1.00740 0.96303 0.95254 1.21569 0.95053 0.94574 1.02991 0.92260 0.92348 0.93626 0.91903 0.90887 0.91155 0.89676 0.90538 0.93997 0.75188 0.93320 0.90677 0.76440 0.92112 0.92842 0.94162 0.96048 0.93182 0.93945 0.92033 0.91309 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.67 71.98 0.70 -1.26 16 2 C -0.11 -1.35 5.40 30.59 0.17 -1.19 16 3 C -0.09 -1.36 2.19 -10.80 -0.02 -1.39 16 4 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 5 C -0.11 -1.54 4.96 30.59 0.15 -1.39 16 6 C -0.11 -2.18 5.10 30.60 0.16 -2.02 16 7 C -0.09 -1.88 2.52 -11.54 -0.03 -1.91 16 8 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 9 C 0.51 15.36 7.15 87.66 0.63 15.98 16 10 O -0.59 -23.34 15.98 -3.03 -0.05 -23.39 16 11 N -0.71 -20.10 5.21 -463.06 -2.41 -22.51 16 12 C 0.14 5.07 5.33 86.38 0.46 5.53 16 13 C 0.09 3.30 1.73 -10.37 -0.02 3.28 16 14 O -0.55 -16.10 13.55 -148.98 -2.02 -18.12 16 15 C 0.13 5.46 8.10 83.17 0.67 6.14 16 16 N -0.63 -32.60 3.56 -738.44 -2.63 -35.23 16 17 C -0.23 -13.10 10.75 84.03 0.90 -12.20 16 18 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 19 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 20 N -0.95 -56.70 11.49 21.65 0.25 -56.46 16 21 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 C 0.14 6.38 6.85 83.26 0.57 6.95 16 26 C -0.10 -2.09 4.50 30.61 0.14 -1.95 16 27 C -0.10 -1.54 5.21 30.61 0.16 -1.38 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.72 6.57 -2.38 -0.02 0.71 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.07 1.03 6.56 -2.39 -0.02 1.01 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 1.39 7.56 -2.39 -0.02 1.37 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.41 8.75 6.66 -92.71 -0.62 8.13 16 38 H 0.05 2.21 7.95 -2.39 -0.02 2.20 16 39 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.39 7.68 7.50 -74.06 -0.56 7.13 16 41 H 0.06 2.36 8.12 -2.39 -0.02 2.34 16 42 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.05 2.57 7.08 -2.39 -0.02 2.55 16 46 H 0.04 1.12 8.10 -2.39 -0.02 1.10 16 47 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 48 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -73.05 381.82 0.02 -73.03 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -0.24 Total: 24.38 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 5.10 Total: 10.16 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -4.80 Total: -114.20 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -2.07 Total: -41.51 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -73.05 0.02 -73.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699923536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.340 kcal (2) G-P(sol) polarization free energy of solvation -73.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds