Wall clock time and date at job start Tue Mar 31 2020 10:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47224 * 2 1 4 4 H 1.08999 * 109.48398 * 54.97630 * 3 2 1 5 5 C 1.53091 * 109.47855 * 174.99781 * 3 2 1 6 6 C 1.53182 * 109.16106 * 177.59356 * 5 3 2 7 7 H 1.09000 * 109.54274 * 183.06749 * 6 5 3 8 8 C 1.50700 * 109.54268 * 62.89065 * 6 5 3 9 9 O 1.21286 * 119.99681 * 0.17756 * 8 6 5 10 10 N 1.34774 * 120.00296 * 180.17601 * 8 6 5 11 11 C 1.46497 * 120.00417 * 180.02562 * 10 8 6 12 12 C 1.52995 * 109.47171 * 180.02562 * 11 10 8 13 13 N 1.46508 * 109.47077 * 179.97438 * 12 11 10 14 14 C 1.36936 * 119.99668 * 89.99882 * 13 12 11 15 15 H 1.07996 * 120.00045 * 216.91037 * 14 13 12 16 16 C 1.38819 * 120.00201 * 36.91163 * 14 13 12 17 17 N 1.31618 * 119.99881 * 21.17711 * 16 14 13 18 18 Si 1.86801 * 120.00054 * 201.17839 * 16 14 13 19 19 H 1.48499 * 109.47024 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47051 * 120.00006 * 18 16 14 21 21 H 1.48493 * 109.46859 * 239.99780 * 18 16 14 22 22 C 1.46495 * 120.00170 * 270.00436 * 13 12 11 23 23 C 1.53003 * 117.49715 * 194.47294 * 22 13 12 24 24 C 1.52996 * 117.50043 * 125.81449 * 22 13 12 25 25 C 1.53177 * 109.10884 * 302.97791 * 6 5 3 26 26 C 1.53281 * 109.06309 * 56.94254 * 25 6 5 27 27 O 1.42895 * 109.48275 * 294.94721 * 3 2 1 28 28 H 1.08999 * 109.47379 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47123 * 299.99863 * 1 2 3 30 30 H 1.09004 * 109.47147 * 59.99535 * 1 2 3 31 31 H 1.09006 * 109.47159 * 240.00667 * 2 1 3 32 32 H 1.08993 * 109.47580 * 120.00664 * 2 1 3 33 33 H 1.09002 * 109.52062 * 57.69185 * 5 3 2 34 34 H 1.08992 * 109.52594 * 297.50226 * 5 3 2 35 35 H 0.97001 * 119.99713 * 359.97438 * 10 8 6 36 36 H 1.09007 * 109.46757 * 299.99964 * 11 10 8 37 37 H 1.09004 * 109.46956 * 59.99619 * 11 10 8 38 38 H 1.08998 * 109.47213 * 299.99740 * 12 11 10 39 39 H 1.08997 * 109.47214 * 59.99961 * 12 11 10 40 40 H 0.97001 * 119.99929 * 174.83235 * 17 16 14 41 41 H 1.09001 * 115.55166 * 340.13382 * 22 13 12 42 42 H 1.09001 * 117.49555 * 359.97438 * 23 22 13 43 43 H 1.08998 * 117.49725 * 145.01668 * 23 22 13 44 44 H 1.08999 * 117.49658 * 214.97501 * 24 22 13 45 45 H 1.09004 * 117.50139 * 359.97438 * 24 22 13 46 46 H 1.09001 * 109.51871 * 176.93056 * 25 6 5 47 47 H 1.08995 * 109.52673 * 297.11695 * 25 6 5 48 48 H 1.08999 * 109.45541 * 182.44541 * 26 25 6 49 49 H 1.08998 * 109.46873 * 62.44743 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9819 0.8415 5 6 3.5657 1.4445 0.1258 6 6 4.0734 2.8885 0.0646 7 1 5.1628 2.8937 0.0989 8 6 3.5284 3.6645 1.2359 9 8 2.8075 3.1173 2.0432 10 7 3.8421 4.9666 1.3862 11 6 3.3127 5.7209 2.5251 12 6 3.8166 7.1640 2.4595 13 7 3.2867 7.9185 3.5981 14 6 3.9890 7.9686 4.7726 15 1 3.4642 7.9575 5.7164 16 6 5.3754 8.0336 4.7501 17 7 5.9968 8.4596 3.6709 18 14 6.3592 7.5166 6.2516 19 1 5.4309 7.0807 7.3255 20 1 7.2609 6.3934 5.8898 21 1 7.1679 8.6652 6.7329 22 6 2.0056 8.6192 3.4802 23 6 1.6644 9.6532 4.5551 24 6 0.9321 8.3093 4.5254 25 6 3.5987 3.5319 -1.2419 26 6 2.0700 3.4480 -1.3148 27 8 1.6632 2.0813 -1.2214 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 3.9995 0.8709 -0.6933 34 1 3.8534 0.9973 1.0773 35 1 4.4189 5.4042 0.7407 36 1 2.2232 5.7148 2.4900 37 1 3.6490 5.2600 3.4539 38 1 4.9060 7.1705 2.4943 39 1 3.4799 7.6245 1.5307 40 1 6.9597 8.5764 3.6799 41 1 1.6731 8.8230 2.4623 42 1 2.3930 9.8117 5.3502 43 1 1.1071 10.5369 4.2444 44 1 -0.1067 8.3096 4.1952 45 1 1.1788 7.5838 5.3005 46 1 3.9100 4.5762 -1.2677 47 1 4.0332 3.0005 -2.0886 48 1 1.7282 3.8651 -2.2621 49 1 1.6354 4.0137 -0.4907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753162055.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:32 Heat of formation + Delta-G solvation = -53.694102 kcal Electronic energy + Delta-G solvation = -26957.528875 eV Core-core repulsion = 23306.458076 eV Total energy + Delta-G solvation = -3651.070799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.56158 -38.25195 -37.13812 -34.84127 -34.16707 -33.62952 -33.16750 -30.82894 -29.83983 -27.84504 -25.73169 -24.45641 -23.69839 -22.37924 -21.41146 -21.37510 -21.05626 -19.95439 -19.33902 -16.76744 -16.44006 -16.34132 -16.08588 -15.56760 -15.50126 -15.11062 -14.51071 -14.42327 -13.99361 -13.85279 -13.75990 -13.59463 -13.34884 -12.99316 -12.65099 -12.23949 -12.12236 -11.99848 -11.90913 -11.68061 -11.48865 -11.21631 -11.08593 -10.98174 -10.88303 -10.72657 -10.62328 -10.55334 -10.33407 -10.21934 -10.03007 -9.68118 -9.65446 -9.33354 -9.13130 -8.59825 -8.49823 -6.60386 -5.94675 -3.50238 2.88759 3.26884 3.36685 3.40228 3.50856 3.77457 4.35081 4.49193 4.66611 4.70793 4.82603 4.90768 5.01132 5.14707 5.16695 5.23591 5.26625 5.31684 5.41589 5.49794 5.55354 5.68184 5.76521 5.79424 5.85815 5.87875 5.90647 5.94756 5.98387 6.03913 6.06725 6.14850 6.19888 6.28456 6.31257 6.46516 6.47765 6.57036 6.83272 6.90132 7.00990 7.14529 7.26625 7.44897 7.73062 7.87510 8.38489 8.54118 9.03620 9.65695 10.21402 11.06525 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.003440 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.436945 B = 8138.006823 C = 8733.780265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.078 3.922 4 H 0.087 0.913 5 C -0.126 4.126 6 C -0.114 4.114 7 H 0.099 0.901 8 C 0.510 3.490 9 O -0.544 6.544 10 N -0.718 5.718 11 C 0.099 3.901 12 C 0.139 3.861 13 N -0.546 5.546 14 C -0.262 4.262 15 H 0.065 0.935 16 C 0.017 3.983 17 N -0.888 5.888 18 Si 0.900 3.100 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.288 1.288 22 C 0.126 3.874 23 C -0.195 4.195 24 C -0.227 4.227 25 C -0.146 4.146 26 C 0.060 3.940 27 O -0.381 6.381 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.397 0.603 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.030 0.970 40 H 0.257 0.743 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.094 0.906 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.682 -10.726 -11.279 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.021 3.979 4 H 0.105 0.895 5 C -0.164 4.164 6 C -0.136 4.136 7 H 0.117 0.883 8 C 0.295 3.705 9 O -0.422 6.422 10 N -0.369 5.369 11 C -0.026 4.026 12 C 0.012 3.988 13 N -0.262 5.262 14 C -0.392 4.392 15 H 0.083 0.917 16 C -0.184 4.184 17 N -0.530 5.530 18 Si 0.729 3.271 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.215 1.215 22 C 0.016 3.984 23 C -0.234 4.234 24 C -0.267 4.267 25 C -0.184 4.184 26 C -0.017 4.017 27 O -0.300 6.300 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.230 0.770 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.112 0.888 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.076 -11.221 -10.877 16.431 hybrid contribution 1.118 0.270 0.780 1.390 sum -3.958 -10.951 -10.097 15.412 Atomic orbital electron populations 1.21706 0.95435 1.01128 1.02360 1.21506 0.96643 0.94666 1.02193 1.22443 0.93418 0.94228 0.87818 0.89532 1.21970 0.97023 0.94472 1.02984 1.21441 1.02053 0.96185 0.93906 0.88254 1.20512 0.81034 0.82395 0.86554 1.90636 1.37614 1.69090 1.44864 1.46133 1.51268 1.10405 1.29065 1.22332 0.97858 0.94825 0.87586 1.21095 1.02567 0.86475 0.88695 1.43225 1.18418 1.52517 1.12032 1.19011 0.88039 1.46833 0.85273 0.91736 1.25200 0.97604 0.98539 0.97056 1.69881 1.08911 1.45859 1.28368 0.86272 0.80039 0.78216 0.82612 1.19903 1.21282 1.21451 1.21136 0.88133 0.96965 0.92138 1.23084 1.03553 0.91730 1.05033 1.23377 0.96896 0.99825 1.06641 1.22215 0.97701 1.01745 0.96699 1.22554 0.93249 0.83720 1.02147 1.87857 1.78746 1.24238 1.39161 0.93077 0.92768 0.92122 0.91666 0.90765 0.90869 0.90244 0.76995 0.93048 0.91750 0.87882 0.95120 0.93274 0.89416 0.88299 0.90772 0.90882 0.89635 0.90231 0.90058 0.88800 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.81 37.16 0.36 -1.20 16 2 C -0.11 -1.22 5.64 -26.73 -0.15 -1.37 16 3 C 0.08 1.00 2.35 -26.68 -0.06 0.94 16 4 H 0.09 1.37 5.81 -51.93 -0.30 1.07 16 5 C -0.13 -1.48 4.56 -26.59 -0.12 -1.60 16 6 C -0.11 -1.34 3.04 -91.59 -0.28 -1.62 16 7 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 8 C 0.51 8.01 5.82 -10.99 -0.06 7.94 16 9 O -0.54 -10.47 13.85 5.55 0.08 -10.40 16 10 N -0.72 -11.35 5.43 -60.29 -0.33 -11.67 16 11 C 0.10 1.95 6.00 -4.05 -0.02 1.92 16 12 C 0.14 2.97 5.45 -4.04 -0.02 2.95 16 13 N -0.55 -12.93 2.79 -165.66 -0.46 -13.39 16 14 C -0.26 -6.83 8.07 -15.06 -0.12 -6.96 16 15 H 0.07 1.72 7.16 -52.49 -0.38 1.34 16 16 C 0.02 0.43 4.97 -17.43 -0.09 0.35 16 17 N -0.89 -24.00 11.40 55.49 0.63 -23.37 16 18 Si 0.90 20.99 29.61 -169.99 -5.03 15.96 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.13 2.62 6.61 -67.93 -0.45 2.18 16 23 C -0.20 -3.85 9.81 -26.69 -0.26 -4.11 16 24 C -0.23 -4.34 10.08 -26.70 -0.27 -4.61 16 25 C -0.15 -1.44 5.58 -26.49 -0.15 -1.59 16 26 C 0.06 0.69 6.62 37.30 0.25 0.94 16 27 O -0.38 -4.95 9.95 -35.23 -0.35 -5.30 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.67 7.83 -51.93 -0.41 0.26 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.98 8.02 -51.93 -0.42 0.56 16 35 H 0.40 5.27 7.87 -40.82 -0.32 4.95 16 36 H 0.05 1.05 8.14 -51.92 -0.42 0.62 16 37 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 38 H 0.10 2.48 5.46 -51.93 -0.28 2.19 16 39 H 0.03 0.60 8.04 -51.93 -0.42 0.19 16 40 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 41 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 42 H 0.10 2.16 6.95 -51.93 -0.36 1.80 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.77 7.98 -51.93 -0.41 1.36 16 46 H 0.08 0.69 7.51 -51.93 -0.39 0.30 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.05 0.67 7.38 -51.93 -0.38 0.29 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -29.38 382.87 -9.84 -39.22 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.70 Total: 9.03 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -1.45 Total: -5.86 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.16 Total: -48.43 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.27 Total: -15.70 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.38 -9.84 -39.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753162055.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.473 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds