Wall clock time and date at job start Tue Mar 31 2020 10:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47224 * 2 1 4 4 H 1.08999 * 109.48398 * 54.97630 * 3 2 1 5 5 C 1.53091 * 109.47855 * 174.99781 * 3 2 1 6 6 C 1.53182 * 109.16106 * 177.59356 * 5 3 2 7 7 H 1.09000 * 109.54274 * 183.06749 * 6 5 3 8 8 C 1.50700 * 109.54268 * 62.89065 * 6 5 3 9 9 O 1.21286 * 119.99681 * 0.17756 * 8 6 5 10 10 N 1.34774 * 120.00296 * 180.17601 * 8 6 5 11 11 C 1.46497 * 120.00417 * 180.02562 * 10 8 6 12 12 C 1.52995 * 109.47171 * 180.02562 * 11 10 8 13 13 N 1.46508 * 109.47077 * 179.97438 * 12 11 10 14 14 C 1.36936 * 119.99668 * 89.99882 * 13 12 11 15 15 H 1.07996 * 120.00045 * 216.91037 * 14 13 12 16 16 C 1.38819 * 120.00201 * 36.91163 * 14 13 12 17 17 N 1.31618 * 119.99881 * 21.17711 * 16 14 13 18 18 Si 1.86801 * 120.00054 * 201.17839 * 16 14 13 19 19 H 1.48499 * 109.47024 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47051 * 120.00006 * 18 16 14 21 21 H 1.48493 * 109.46859 * 239.99780 * 18 16 14 22 22 C 1.46495 * 120.00170 * 270.00436 * 13 12 11 23 23 C 1.53003 * 117.49715 * 194.47294 * 22 13 12 24 24 C 1.52996 * 117.50043 * 125.81449 * 22 13 12 25 25 C 1.53177 * 109.10884 * 302.97791 * 6 5 3 26 26 C 1.53281 * 109.06309 * 56.94254 * 25 6 5 27 27 O 1.42895 * 109.48275 * 294.94721 * 3 2 1 28 28 H 1.08999 * 109.47379 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47123 * 299.99863 * 1 2 3 30 30 H 1.09004 * 109.47147 * 59.99535 * 1 2 3 31 31 H 1.09006 * 109.47159 * 240.00667 * 2 1 3 32 32 H 1.08993 * 109.47580 * 120.00664 * 2 1 3 33 33 H 1.09002 * 109.52062 * 57.69185 * 5 3 2 34 34 H 1.08992 * 109.52594 * 297.50226 * 5 3 2 35 35 H 0.97001 * 119.99713 * 359.97438 * 10 8 6 36 36 H 1.09007 * 109.46757 * 299.99964 * 11 10 8 37 37 H 1.09004 * 109.46956 * 59.99619 * 11 10 8 38 38 H 1.08998 * 109.47213 * 299.99740 * 12 11 10 39 39 H 1.08997 * 109.47214 * 59.99961 * 12 11 10 40 40 H 0.97001 * 119.99929 * 174.83235 * 17 16 14 41 41 H 1.09001 * 115.55166 * 340.13382 * 22 13 12 42 42 H 1.09001 * 117.49555 * 359.97438 * 23 22 13 43 43 H 1.08998 * 117.49725 * 145.01668 * 23 22 13 44 44 H 1.08999 * 117.49658 * 214.97501 * 24 22 13 45 45 H 1.09004 * 117.50139 * 359.97438 * 24 22 13 46 46 H 1.09001 * 109.51871 * 176.93056 * 25 6 5 47 47 H 1.08995 * 109.52673 * 297.11695 * 25 6 5 48 48 H 1.08999 * 109.45541 * 182.44541 * 26 25 6 49 49 H 1.08998 * 109.46873 * 62.44743 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9819 0.8415 5 6 3.5657 1.4445 0.1258 6 6 4.0734 2.8885 0.0646 7 1 5.1628 2.8937 0.0989 8 6 3.5284 3.6645 1.2359 9 8 2.8075 3.1173 2.0432 10 7 3.8421 4.9666 1.3862 11 6 3.3127 5.7209 2.5251 12 6 3.8166 7.1640 2.4595 13 7 3.2867 7.9185 3.5981 14 6 3.9890 7.9686 4.7726 15 1 3.4642 7.9575 5.7164 16 6 5.3754 8.0336 4.7501 17 7 5.9968 8.4596 3.6709 18 14 6.3592 7.5166 6.2516 19 1 5.4309 7.0807 7.3255 20 1 7.2609 6.3934 5.8898 21 1 7.1679 8.6652 6.7329 22 6 2.0056 8.6192 3.4802 23 6 1.6644 9.6532 4.5551 24 6 0.9321 8.3093 4.5254 25 6 3.5987 3.5319 -1.2419 26 6 2.0700 3.4480 -1.3148 27 8 1.6632 2.0813 -1.2214 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 3.9995 0.8709 -0.6933 34 1 3.8534 0.9973 1.0773 35 1 4.4189 5.4042 0.7407 36 1 2.2232 5.7148 2.4900 37 1 3.6490 5.2600 3.4539 38 1 4.9060 7.1705 2.4943 39 1 3.4799 7.6245 1.5307 40 1 6.9597 8.5764 3.6799 41 1 1.6731 8.8230 2.4623 42 1 2.3930 9.8117 5.3502 43 1 1.1071 10.5369 4.2444 44 1 -0.1067 8.3096 4.1952 45 1 1.1788 7.5838 5.3005 46 1 3.9100 4.5762 -1.2677 47 1 4.0332 3.0005 -2.0886 48 1 1.7282 3.8651 -2.2621 49 1 1.6354 4.0137 -0.4907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753162055.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:31 Heat of formation + Delta-G solvation = -70.982910 kcal Electronic energy + Delta-G solvation = -26958.278574 eV Core-core repulsion = 23306.458076 eV Total energy + Delta-G solvation = -3651.820498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.67920 -39.45952 -38.79404 -36.34038 -35.25454 -34.78625 -34.59676 -32.63125 -30.73242 -29.48244 -26.94425 -26.11798 -24.62988 -23.68805 -22.97797 -22.71536 -22.10209 -21.70510 -20.58654 -18.34378 -17.63958 -17.37392 -17.33059 -17.26734 -16.88121 -16.36609 -16.17518 -15.79174 -15.45199 -15.10630 -14.71761 -14.58663 -14.56428 -14.32597 -14.07931 -13.75128 -13.39665 -13.24847 -13.12743 -12.96173 -12.74024 -12.73193 -12.54512 -12.39222 -12.19925 -12.09591 -12.07126 -11.84594 -11.81435 -11.61409 -11.42605 -11.34346 -10.96928 -10.74942 -10.48566 -10.22863 -10.00546 -8.49869 -7.91333 -5.50537 1.38678 1.44139 1.52722 1.63857 2.18908 2.45464 2.86438 3.10327 3.41876 3.47472 3.58115 3.74651 3.80955 3.94266 4.07594 4.26417 4.27014 4.27567 4.33667 4.38349 4.45010 4.48997 4.51976 4.60087 4.64203 4.72078 4.77486 4.84989 4.89737 4.91929 4.93092 5.01045 5.01592 5.08483 5.10876 5.14857 5.20305 5.28920 5.33149 5.41142 5.47376 5.53097 5.63075 5.72449 6.31925 6.41431 6.61159 7.09240 7.28790 7.77654 8.27615 9.05567 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.003440 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.436945 B = 8138.006823 C = 8733.780265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C 0.077 3.923 4 H 0.049 0.951 5 C -0.125 4.125 6 C -0.109 4.109 7 H 0.124 0.876 8 C 0.506 3.494 9 O -0.583 6.583 10 N -0.711 5.711 11 C 0.123 3.877 12 C 0.147 3.853 13 N -0.564 5.564 14 C -0.267 4.267 15 H 0.050 0.950 16 C -0.023 4.023 17 N -0.909 5.909 18 Si 0.950 3.050 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.285 1.285 22 C 0.103 3.897 23 C -0.190 4.190 24 C -0.211 4.211 25 C -0.138 4.138 26 C 0.054 3.946 27 O -0.388 6.388 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.411 0.589 36 H 0.041 0.959 37 H 0.026 0.974 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.256 0.744 41 H 0.110 0.890 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.106 0.894 48 H 0.116 0.884 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.556 -11.244 -13.241 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C 0.020 3.980 4 H 0.067 0.933 5 C -0.163 4.163 6 C -0.130 4.130 7 H 0.142 0.858 8 C 0.294 3.706 9 O -0.464 6.464 10 N -0.363 5.363 11 C -0.003 4.003 12 C 0.020 3.980 13 N -0.282 5.282 14 C -0.397 4.397 15 H 0.067 0.933 16 C -0.221 4.221 17 N -0.552 5.552 18 Si 0.778 3.222 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.211 1.211 22 C -0.005 4.005 23 C -0.229 4.229 24 C -0.251 4.251 25 C -0.176 4.176 26 C -0.023 4.023 27 O -0.308 6.308 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.248 0.752 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.128 0.872 42 H 0.090 0.910 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.081 0.919 46 H 0.113 0.887 47 H 0.125 0.875 48 H 0.134 0.866 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.953 -11.731 -12.861 18.099 hybrid contribution 0.979 0.436 1.394 1.758 sum -3.973 -11.295 -11.468 16.579 Atomic orbital electron populations 1.21687 0.95439 1.02024 1.01298 1.21531 0.96694 0.93579 1.03103 1.22369 0.94231 0.94811 0.86634 0.93285 1.21984 0.96175 0.94698 1.03443 1.21518 1.03215 0.95534 0.92723 0.85803 1.21337 0.80075 0.82053 0.87178 1.90630 1.39308 1.69816 1.46647 1.45970 1.51449 1.10614 1.28265 1.21760 0.97010 0.94077 0.87467 1.20971 1.01076 0.87141 0.88829 1.43411 1.19306 1.53612 1.11830 1.19033 0.88482 1.46337 0.85848 0.93265 1.25707 0.98239 0.99018 0.99169 1.69964 1.08883 1.46891 1.29464 0.85489 0.78723 0.77705 0.80248 1.20119 1.21380 1.21130 1.21442 0.87471 0.97892 0.93740 1.23073 1.03233 0.93020 1.03589 1.23316 0.98033 0.98803 1.04994 1.22234 0.96299 1.02911 0.96145 1.22712 0.94545 0.82824 1.02223 1.87848 1.79205 1.24903 1.38807 0.91186 0.94211 0.92775 0.90169 0.90296 0.88232 0.91317 0.75248 0.94027 0.95508 0.90188 0.93278 0.93404 0.87208 0.91013 0.87701 0.87754 0.91869 0.88714 0.87529 0.86557 0.95853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.81 71.98 0.71 -2.31 16 2 C -0.11 -2.31 5.64 30.59 0.17 -2.14 16 3 C 0.08 1.94 2.35 30.63 0.07 2.01 16 4 H 0.05 1.62 5.81 -2.39 -0.01 1.61 16 5 C -0.13 -2.72 4.56 30.69 0.14 -2.58 16 6 C -0.11 -2.33 3.04 -11.42 -0.03 -2.37 16 7 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 8 C 0.51 15.82 5.82 87.66 0.51 16.33 16 9 O -0.58 -23.24 13.85 -3.05 -0.04 -23.29 16 10 N -0.71 -22.31 5.43 -463.06 -2.52 -24.83 16 11 C 0.12 4.96 6.00 86.38 0.52 5.48 16 12 C 0.15 6.31 5.45 86.38 0.47 6.78 16 13 N -0.56 -27.03 2.79 -678.04 -1.89 -28.92 16 14 C -0.27 -14.23 8.07 84.04 0.68 -13.55 16 15 H 0.05 2.72 7.16 -2.91 -0.02 2.70 16 16 C -0.02 -1.23 4.97 84.86 0.42 -0.81 16 17 N -0.91 -49.57 11.40 21.65 0.25 -49.33 16 18 Si 0.95 43.84 29.61 68.60 2.03 45.87 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 C 0.10 4.21 6.61 44.99 0.30 4.51 16 23 C -0.19 -7.33 9.81 30.62 0.30 -7.03 16 24 C -0.21 -7.89 10.08 30.62 0.31 -7.58 16 25 C -0.14 -2.32 5.58 30.75 0.17 -2.14 16 26 C 0.05 1.14 6.62 72.08 0.48 1.62 16 27 O -0.39 -9.59 9.95 -148.98 -1.48 -11.07 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 1.16 7.83 -2.38 -0.02 1.14 16 31 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.64 8.02 -2.39 -0.02 1.62 16 35 H 0.41 10.42 7.87 -92.71 -0.73 9.69 16 36 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.08 3.89 5.46 -2.39 -0.01 3.88 16 39 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 40 H 0.26 13.48 8.32 -92.71 -0.77 12.71 16 41 H 0.11 3.98 8.10 -2.39 -0.02 3.96 16 42 H 0.07 3.16 6.95 -2.39 -0.02 3.15 16 43 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 44 H 0.10 3.24 8.14 -2.39 -0.02 3.23 16 45 H 0.06 2.64 7.98 -2.38 -0.02 2.62 16 46 H 0.09 1.33 7.51 -2.39 -0.02 1.31 16 47 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.02 0.62 7.38 -2.39 -0.02 0.60 16 Total: -1.00 -65.48 382.87 1.75 -63.74 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.19 Total: 31.59 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 5.21 Total: -3.77 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -4.16 Total: -103.08 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -1.52 Total: -34.36 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -65.48 1.75 -63.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753162055.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.243 kcal (2) G-P(sol) polarization free energy of solvation -65.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds