Wall clock time and date at job start Tue Mar 31 2020 10:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 119.99713 * 2 1 4 4 C 1.53007 * 109.47084 * 239.99609 * 3 2 1 5 5 O 1.42893 * 109.47809 * 0.02562 * 3 2 1 6 6 C 1.53003 * 109.47090 * 120.00323 * 3 2 1 7 7 C 1.50704 * 109.47288 * 179.97438 * 6 3 2 8 8 O 1.21282 * 119.99590 * 359.97438 * 7 6 3 9 9 N 1.34773 * 119.99867 * 179.97438 * 7 6 3 10 10 C 1.46928 * 120.63068 * 359.72553 * 9 7 6 11 11 C 1.52763 * 109.00445 * 233.57981 * 10 9 7 12 12 C 1.53042 * 109.38516 * 305.58775 * 11 10 9 13 13 C 1.53004 * 109.44730 * 181.25344 * 12 11 10 14 14 N 1.46495 * 109.47121 * 64.94196 * 13 12 11 15 15 C 1.46502 * 120.00369 * 89.99483 * 14 13 12 16 16 C 1.36938 * 119.99927 * 269.99815 * 14 13 12 17 17 H 1.08001 * 119.99848 * 22.10403 * 16 14 13 18 18 C 1.38814 * 120.00030 * 202.10535 * 16 14 13 19 19 N 1.31618 * 120.00040 * 14.15203 * 18 16 14 20 20 Si 1.86802 * 120.00001 * 194.15602 * 18 16 14 21 21 H 1.48500 * 109.46940 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47404 * 119.99826 * 20 18 16 23 23 H 1.48500 * 109.47017 * 239.99788 * 20 18 16 24 24 C 1.53043 * 109.53839 * 61.24365 * 12 11 10 25 25 C 1.46931 * 120.62810 * 180.02562 * 9 7 6 26 26 H 1.08003 * 119.99489 * 359.97438 * 1 2 3 27 27 H 1.07992 * 120.00401 * 180.02562 * 1 2 3 28 28 H 1.07995 * 119.99436 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46487 * 60.00399 * 4 3 2 30 30 H 1.08998 * 109.46857 * 300.00830 * 4 3 2 31 31 H 1.08992 * 109.47317 * 180.02562 * 4 3 2 32 32 H 0.96700 * 114.00018 * 60.00203 * 5 3 2 33 33 H 1.08997 * 109.46912 * 299.99710 * 6 3 2 34 34 H 1.08996 * 109.47256 * 59.99508 * 6 3 2 35 35 H 1.09000 * 109.58796 * 353.41429 * 10 9 7 36 36 H 1.08995 * 109.58567 * 113.84451 * 10 9 7 37 37 H 1.09000 * 109.56223 * 185.55205 * 11 10 9 38 38 H 1.09004 * 109.38840 * 65.51817 * 11 10 9 39 39 H 1.08995 * 109.46325 * 301.21968 * 12 11 10 40 40 H 1.09000 * 109.47176 * 184.93795 * 13 12 11 41 41 H 1.08995 * 109.47406 * 304.93698 * 13 12 11 42 42 H 1.09007 * 109.46992 * 95.13047 * 15 14 13 43 43 H 1.08995 * 109.47555 * 215.13421 * 15 14 13 44 44 H 1.09001 * 109.46778 * 335.13684 * 15 14 13 45 45 H 0.96998 * 119.99792 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.49705 * 178.68480 * 24 12 11 47 47 H 1.08996 * 109.52201 * 58.59638 * 24 12 11 48 48 H 1.08996 * 109.58514 * 246.15464 * 25 9 7 49 49 H 1.08993 * 109.58747 * 6.44165 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1350 2.3913 0.0006 6 6 2.9432 1.3861 1.2492 7 6 3.6971 2.6910 1.2490 8 8 3.5461 3.4784 0.3389 9 7 4.5392 2.9829 2.2600 10 6 4.7280 2.0418 3.3723 11 6 4.4788 2.7729 4.6903 12 6 5.3706 4.0148 4.7588 13 6 5.1450 4.7311 6.0919 14 7 5.5912 3.8705 7.1902 15 6 6.9754 3.9461 7.6641 16 6 4.7145 2.9955 7.7740 17 1 3.8366 2.6706 7.2353 18 6 4.9541 2.5260 9.0582 19 7 5.8511 3.1174 9.8185 20 14 4.0036 1.0547 9.7073 21 1 3.0609 0.5754 8.6648 22 1 4.9524 -0.0333 10.0554 23 1 3.2414 1.4528 10.9180 24 6 5.0215 4.9598 3.6068 25 6 5.2807 4.2513 2.2740 26 1 -0.5399 0.9354 0.0004 27 1 -0.5400 -0.9352 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 2.3165 1.3284 -2.1392 30 1 3.6514 0.5576 -1.2492 31 1 3.4885 2.3299 -1.2491 32 1 0.5440 2.4031 0.7659 33 1 2.3165 1.3284 2.1392 34 1 3.6514 0.5577 1.2492 35 1 4.0237 1.2156 3.2755 36 1 5.7483 1.6587 3.3575 37 1 4.7118 2.1112 5.5245 38 1 3.4323 3.0730 4.7454 39 1 6.4159 3.7161 4.6795 40 1 5.7131 5.6612 6.1053 41 1 4.0842 4.9515 6.2109 42 1 7.0306 4.6206 8.5186 43 1 7.3120 2.9533 7.9626 44 1 7.6135 4.3207 6.8637 45 1 6.0188 2.7891 10.7156 46 1 5.6409 5.8546 3.6698 47 1 3.9701 5.2398 3.6712 48 1 6.3471 4.0522 2.1676 49 1 4.9428 4.8813 1.4512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753362200.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:58 Heat of formation + Delta-G solvation = -44.502480 kcal Electronic energy + Delta-G solvation = -27050.835008 eV Core-core repulsion = 23400.162788 eV Total energy + Delta-G solvation = -3650.672220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.44697 -38.64551 -37.28459 -35.43499 -33.25999 -32.98532 -31.71433 -30.80023 -30.57449 -28.33571 -26.69541 -25.87212 -23.72629 -23.15752 -22.52224 -20.95896 -19.95078 -19.78974 -18.75231 -17.32548 -16.83431 -16.64529 -15.95250 -15.58277 -15.14159 -14.90497 -14.72598 -14.12217 -13.90978 -13.64833 -13.50367 -13.38817 -13.10689 -12.83300 -12.70547 -12.44201 -12.32019 -11.98447 -11.88838 -11.79148 -11.63356 -11.24577 -11.21078 -11.02050 -10.87372 -10.83345 -10.48320 -10.41936 -10.34226 -10.24667 -10.00198 -9.81274 -9.69100 -9.59123 -9.43685 -8.57050 -8.45308 -6.72797 -5.73031 -3.18188 1.92991 2.70457 3.07753 3.34463 3.41283 3.43470 4.06780 4.38094 4.47671 4.53968 4.78310 4.81483 4.97878 5.02171 5.14547 5.25857 5.30536 5.34833 5.44255 5.46595 5.48181 5.53757 5.63554 5.71145 5.72784 5.84248 5.89516 5.94824 6.12687 6.15410 6.20341 6.29238 6.30522 6.44636 6.47708 6.51081 6.61687 6.66490 6.77642 6.96618 7.01137 7.37531 7.51733 7.53955 7.72399 7.79632 8.28950 8.39113 9.23395 9.88394 10.37893 11.31753 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.003438 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.434438 B = 8142.717448 C = 9433.438201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.187 4.187 3 C 0.177 3.823 4 C -0.146 4.146 5 O -0.539 6.539 6 C -0.166 4.166 7 C 0.516 3.484 8 O -0.528 6.528 9 N -0.609 5.609 10 C 0.105 3.895 11 C -0.125 4.125 12 C -0.105 4.105 13 C 0.157 3.843 14 N -0.602 5.602 15 C 0.163 3.837 16 C -0.251 4.251 17 H 0.072 0.928 18 C 0.000 4.000 19 N -0.907 5.907 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.291 1.291 24 C -0.128 4.128 25 C 0.114 3.886 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.369 0.631 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.044 0.956 42 H 0.029 0.971 43 H 0.039 0.961 44 H -0.004 1.004 45 H 0.251 0.749 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 -4.682 -17.752 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.205 4.205 3 C 0.136 3.864 4 C -0.203 4.203 5 O -0.344 6.344 6 C -0.206 4.206 7 C 0.304 3.696 8 O -0.405 6.405 9 N -0.343 5.343 10 C -0.018 4.018 11 C -0.163 4.163 12 C -0.126 4.126 13 C 0.029 3.971 14 N -0.325 5.325 15 C 0.018 3.982 16 C -0.381 4.381 17 H 0.089 0.911 18 C -0.198 4.198 19 N -0.552 5.552 20 Si 0.729 3.271 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.218 1.218 24 C -0.166 4.166 25 C -0.008 4.008 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.133 0.867 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.216 0.784 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.015 0.985 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.218 -4.157 -18.608 19.528 hybrid contribution -0.700 -1.214 1.292 1.906 sum -4.918 -5.372 -17.316 18.785 Atomic orbital electron populations 1.23871 0.96046 1.02396 0.99470 1.23626 0.96782 0.98824 1.01319 1.19852 0.88003 0.84005 0.94563 1.21930 0.98837 1.04270 0.95275 1.86708 1.50102 1.48919 1.48625 1.22421 1.00443 0.97196 1.00520 1.20357 0.79207 0.88324 0.81761 1.90645 1.64399 1.50171 1.35331 1.48226 1.43676 1.19968 1.22464 1.21829 1.01547 0.91681 0.86731 1.21932 0.99681 0.98509 0.96141 1.21803 0.99184 0.95424 0.96202 1.20752 0.97954 0.91698 0.86689 1.43900 1.07681 1.43610 1.37304 1.20760 0.83014 1.00143 0.94234 1.19245 1.04872 1.18227 0.95740 0.91072 1.25011 0.99163 0.99903 0.95773 1.70088 1.36534 1.40241 1.08326 0.86273 0.79223 0.82836 0.78746 1.20354 1.21696 1.21828 1.21933 1.01925 0.98607 0.94174 1.21559 0.95395 0.84949 0.98896 0.87709 0.88236 0.86658 0.92321 0.91994 0.88736 0.78421 0.88594 0.88162 0.90495 0.91540 0.88033 0.92572 0.91875 0.94759 0.93754 0.95313 0.94201 0.98501 0.93885 0.91219 0.91941 0.92003 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 13.93 29.01 0.40 -1.03 16 2 C -0.19 -1.59 8.77 -36.03 -0.32 -1.91 16 3 C 0.18 1.84 0.94 -91.77 -0.09 1.75 16 4 C -0.15 -1.61 8.50 37.16 0.32 -1.29 16 5 O -0.54 -6.44 10.85 -53.48 -0.58 -7.02 16 6 C -0.17 -1.67 3.28 -27.88 -0.09 -1.76 16 7 C 0.52 6.85 7.26 -10.99 -0.08 6.77 16 8 O -0.53 -8.60 12.37 -12.69 -0.16 -8.76 16 9 N -0.61 -7.91 2.98 -173.05 -0.52 -8.43 16 10 C 0.10 1.30 6.31 -3.93 -0.02 1.27 16 11 C -0.12 -1.93 4.60 -26.83 -0.12 -2.05 16 12 C -0.10 -1.67 2.36 -90.57 -0.21 -1.88 16 13 C 0.16 3.05 5.15 -4.04 -0.02 3.03 16 14 N -0.60 -14.34 2.80 -181.12 -0.51 -14.85 16 15 C 0.16 3.90 8.98 59.85 0.54 4.44 16 16 C -0.25 -6.48 8.15 -15.06 -0.12 -6.61 16 17 H 0.07 1.77 6.72 -52.49 -0.35 1.42 16 18 C 0.00 -0.01 5.08 -17.43 -0.09 -0.10 16 19 N -0.91 -25.93 10.72 55.49 0.59 -25.34 16 20 Si 0.90 21.07 29.58 -169.99 -5.03 16.05 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C -0.13 -1.73 5.36 -26.63 -0.14 -1.88 16 25 C 0.11 1.49 6.43 -3.73 -0.02 1.47 16 26 H 0.10 0.82 6.41 -52.48 -0.34 0.49 16 27 H 0.10 0.66 8.06 -52.49 -0.42 0.23 16 28 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 1.28 5.51 -51.93 -0.29 1.00 16 32 H 0.37 3.28 8.05 45.56 0.37 3.65 16 33 H 0.10 0.88 7.68 -51.93 -0.40 0.48 16 34 H 0.10 0.84 7.95 -51.93 -0.41 0.42 16 35 H 0.08 0.80 5.93 -51.93 -0.31 0.49 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.85 5.95 -51.93 -0.31 1.54 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 41 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 42 H 0.03 0.75 7.36 -51.92 -0.38 0.37 16 43 H 0.04 1.02 7.31 -51.93 -0.38 0.64 16 44 H 0.00 -0.08 8.03 -51.93 -0.42 -0.49 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.09 1.19 7.00 -51.93 -0.36 0.82 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -31.08 375.31 -8.39 -39.47 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.78 Total: 2.99 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.08 Total: 0.23 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.43 Total: -48.62 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.74 Total: -15.78 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.08 -8.39 -39.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753362200.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.034 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds