Wall clock time and date at job start Tue Mar 31 2020 10:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 119.99713 * 2 1 4 4 C 1.53007 * 109.47084 * 239.99609 * 3 2 1 5 5 O 1.42893 * 109.47809 * 0.02562 * 3 2 1 6 6 C 1.53003 * 109.47090 * 120.00323 * 3 2 1 7 7 C 1.50704 * 109.47288 * 179.97438 * 6 3 2 8 8 O 1.21282 * 119.99590 * 359.97438 * 7 6 3 9 9 N 1.34773 * 119.99867 * 179.97438 * 7 6 3 10 10 C 1.46928 * 120.63068 * 359.72553 * 9 7 6 11 11 C 1.52763 * 109.00445 * 233.57981 * 10 9 7 12 12 C 1.53042 * 109.38516 * 305.58775 * 11 10 9 13 13 C 1.53004 * 109.44730 * 181.25344 * 12 11 10 14 14 N 1.46495 * 109.47121 * 64.94196 * 13 12 11 15 15 C 1.46502 * 120.00369 * 89.99483 * 14 13 12 16 16 C 1.36938 * 119.99927 * 269.99815 * 14 13 12 17 17 H 1.08001 * 119.99848 * 22.10403 * 16 14 13 18 18 C 1.38814 * 120.00030 * 202.10535 * 16 14 13 19 19 N 1.31618 * 120.00040 * 14.15203 * 18 16 14 20 20 Si 1.86802 * 120.00001 * 194.15602 * 18 16 14 21 21 H 1.48500 * 109.46940 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47404 * 119.99826 * 20 18 16 23 23 H 1.48500 * 109.47017 * 239.99788 * 20 18 16 24 24 C 1.53043 * 109.53839 * 61.24365 * 12 11 10 25 25 C 1.46931 * 120.62810 * 180.02562 * 9 7 6 26 26 H 1.08003 * 119.99489 * 359.97438 * 1 2 3 27 27 H 1.07992 * 120.00401 * 180.02562 * 1 2 3 28 28 H 1.07995 * 119.99436 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46487 * 60.00399 * 4 3 2 30 30 H 1.08998 * 109.46857 * 300.00830 * 4 3 2 31 31 H 1.08992 * 109.47317 * 180.02562 * 4 3 2 32 32 H 0.96700 * 114.00018 * 60.00203 * 5 3 2 33 33 H 1.08997 * 109.46912 * 299.99710 * 6 3 2 34 34 H 1.08996 * 109.47256 * 59.99508 * 6 3 2 35 35 H 1.09000 * 109.58796 * 353.41429 * 10 9 7 36 36 H 1.08995 * 109.58567 * 113.84451 * 10 9 7 37 37 H 1.09000 * 109.56223 * 185.55205 * 11 10 9 38 38 H 1.09004 * 109.38840 * 65.51817 * 11 10 9 39 39 H 1.08995 * 109.46325 * 301.21968 * 12 11 10 40 40 H 1.09000 * 109.47176 * 184.93795 * 13 12 11 41 41 H 1.08995 * 109.47406 * 304.93698 * 13 12 11 42 42 H 1.09007 * 109.46992 * 95.13047 * 15 14 13 43 43 H 1.08995 * 109.47555 * 215.13421 * 15 14 13 44 44 H 1.09001 * 109.46778 * 335.13684 * 15 14 13 45 45 H 0.96998 * 119.99792 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.49705 * 178.68480 * 24 12 11 47 47 H 1.08996 * 109.52201 * 58.59638 * 24 12 11 48 48 H 1.08996 * 109.58514 * 246.15464 * 25 9 7 49 49 H 1.08993 * 109.58747 * 6.44165 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1350 2.3913 0.0006 6 6 2.9432 1.3861 1.2492 7 6 3.6971 2.6910 1.2490 8 8 3.5461 3.4784 0.3389 9 7 4.5392 2.9829 2.2600 10 6 4.7280 2.0418 3.3723 11 6 4.4788 2.7729 4.6903 12 6 5.3706 4.0148 4.7588 13 6 5.1450 4.7311 6.0919 14 7 5.5912 3.8705 7.1902 15 6 6.9754 3.9461 7.6641 16 6 4.7145 2.9955 7.7740 17 1 3.8366 2.6706 7.2353 18 6 4.9541 2.5260 9.0582 19 7 5.8511 3.1174 9.8185 20 14 4.0036 1.0547 9.7073 21 1 3.0609 0.5754 8.6648 22 1 4.9524 -0.0333 10.0554 23 1 3.2414 1.4528 10.9180 24 6 5.0215 4.9598 3.6068 25 6 5.2807 4.2513 2.2740 26 1 -0.5399 0.9354 0.0004 27 1 -0.5400 -0.9352 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 2.3165 1.3284 -2.1392 30 1 3.6514 0.5576 -1.2492 31 1 3.4885 2.3299 -1.2491 32 1 0.5440 2.4031 0.7659 33 1 2.3165 1.3284 2.1392 34 1 3.6514 0.5577 1.2492 35 1 4.0237 1.2156 3.2755 36 1 5.7483 1.6587 3.3575 37 1 4.7118 2.1112 5.5245 38 1 3.4323 3.0730 4.7454 39 1 6.4159 3.7161 4.6795 40 1 5.7131 5.6612 6.1053 41 1 4.0842 4.9515 6.2109 42 1 7.0306 4.6206 8.5186 43 1 7.3120 2.9533 7.9626 44 1 7.6135 4.3207 6.8637 45 1 6.0188 2.7891 10.7156 46 1 5.6409 5.8546 3.6698 47 1 3.9701 5.2398 3.6712 48 1 6.3471 4.0522 2.1676 49 1 4.9428 4.8813 1.4512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753362200.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:57 Heat of formation + Delta-G solvation = -62.963899 kcal Electronic energy + Delta-G solvation = -27051.635555 eV Core-core repulsion = 23400.162788 eV Total energy + Delta-G solvation = -3651.472767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.44126 -39.64339 -38.45102 -37.02393 -34.50856 -33.94408 -32.84551 -32.23346 -31.66594 -29.33769 -28.09143 -27.80022 -25.04362 -24.23775 -23.55668 -22.44277 -21.20413 -20.56858 -19.83266 -18.61451 -18.19111 -17.72461 -16.90571 -16.77438 -16.53498 -15.95952 -15.63562 -15.60543 -15.34142 -15.01851 -14.76101 -14.70082 -14.36082 -13.93565 -13.76673 -13.71659 -13.20816 -13.13812 -13.11443 -12.94160 -12.75752 -12.60341 -12.54171 -12.43492 -12.17368 -12.11032 -11.99744 -11.97497 -11.90198 -11.76947 -11.27201 -11.15744 -11.01994 -10.57086 -10.47793 -10.30842 -9.55256 -8.68620 -7.75678 -5.22435 1.32295 1.48788 1.50709 1.59876 1.71450 2.10280 2.55813 3.31979 3.37354 3.56175 3.70114 3.76304 3.90263 4.00730 4.05354 4.11150 4.24021 4.26426 4.40950 4.43441 4.53282 4.60131 4.62003 4.72531 4.81450 4.84999 4.88083 4.90089 4.91081 4.96019 5.09258 5.12594 5.14268 5.16052 5.22209 5.37141 5.38249 5.49169 5.65238 5.67141 5.69993 5.74441 5.78109 5.82663 6.39350 6.50952 6.84708 7.22018 7.28961 7.95300 8.40049 9.28042 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.003438 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.434438 B = 8142.717448 C = 9433.438201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.191 4.191 3 C 0.174 3.826 4 C -0.146 4.146 5 O -0.562 6.562 6 C -0.161 4.161 7 C 0.511 3.489 8 O -0.562 6.562 9 N -0.611 5.611 10 C 0.113 3.887 11 C -0.120 4.120 12 C -0.093 4.093 13 C 0.154 3.846 14 N -0.616 5.616 15 C 0.178 3.822 16 C -0.244 4.244 17 H 0.080 0.920 18 C -0.060 4.060 19 N -0.944 5.944 20 Si 0.960 3.040 21 H -0.260 1.260 22 H -0.295 1.295 23 H -0.300 1.300 24 C -0.117 4.117 25 C 0.116 3.884 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.133 0.867 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.379 0.621 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.041 0.959 41 H 0.035 0.965 42 H -0.001 1.001 43 H 0.015 0.985 44 H 0.029 0.971 45 H 0.244 0.756 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.074 0.926 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 -6.324 -19.206 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.209 4.209 3 C 0.133 3.867 4 C -0.203 4.203 5 O -0.369 6.369 6 C -0.200 4.200 7 C 0.301 3.699 8 O -0.441 6.441 9 N -0.344 5.344 10 C -0.010 4.010 11 C -0.158 4.158 12 C -0.114 4.114 13 C 0.029 3.971 14 N -0.339 5.339 15 C 0.032 3.968 16 C -0.374 4.374 17 H 0.098 0.902 18 C -0.254 4.254 19 N -0.592 5.592 20 Si 0.789 3.211 21 H -0.184 1.184 22 H -0.222 1.222 23 H -0.228 1.228 24 C -0.155 4.155 25 C -0.006 4.006 26 H 0.119 0.881 27 H 0.133 0.867 28 H 0.151 0.849 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.227 0.773 33 H 0.128 0.872 34 H 0.142 0.858 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.017 0.983 43 H 0.034 0.966 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.092 0.908 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.952 -5.799 -20.095 21.493 hybrid contribution -0.498 -0.601 1.675 1.848 sum -5.450 -6.400 -18.420 20.247 Atomic orbital electron populations 1.24028 0.96074 1.02978 0.98570 1.23599 0.96893 0.98350 1.02082 1.19921 0.87946 0.84582 0.94257 1.21912 0.99110 1.03554 0.95724 1.86678 1.50734 1.49983 1.49532 1.22459 1.00679 0.95941 1.00950 1.20936 0.78816 0.89094 0.81056 1.90647 1.65365 1.51545 1.36574 1.48299 1.43584 1.19958 1.22568 1.21790 1.02888 0.91640 0.84645 1.21794 0.98981 0.97912 0.97106 1.21575 0.99205 0.95815 0.94771 1.20917 0.97347 0.91851 0.87035 1.44142 1.07488 1.44142 1.38152 1.20494 0.83880 0.98122 0.94256 1.19600 1.04762 1.17560 0.95457 0.90220 1.25756 1.00661 1.02632 0.96400 1.70259 1.38679 1.41876 1.08384 0.85294 0.78057 0.79687 0.78033 1.18360 1.22165 1.22751 1.21819 1.01653 0.98571 0.93497 1.21514 0.96124 0.85092 0.97916 0.88126 0.86726 0.84905 0.92804 0.89924 0.91551 0.77268 0.87237 0.85759 0.87926 0.90663 0.90666 0.93256 0.92134 0.94061 0.94650 0.98298 0.96591 0.95285 0.94667 0.89920 0.92729 0.90810 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 13.93 67.77 0.94 -1.45 16 2 C -0.19 -2.70 8.77 25.64 0.22 -2.48 16 3 C 0.17 3.26 0.94 -11.54 -0.01 3.24 16 4 C -0.15 -3.02 8.50 71.98 0.61 -2.40 16 5 O -0.56 -12.86 10.85 -131.54 -1.43 -14.29 16 6 C -0.16 -2.76 3.28 29.85 0.10 -2.66 16 7 C 0.51 12.60 7.26 87.66 0.64 13.23 16 8 O -0.56 -17.89 12.37 14.41 0.18 -17.71 16 9 N -0.61 -14.42 2.98 -819.81 -2.44 -16.87 16 10 C 0.11 2.45 6.31 86.22 0.54 2.99 16 11 C -0.12 -3.47 4.60 30.53 0.14 -3.33 16 12 C -0.09 -2.79 2.36 -10.76 -0.03 -2.82 16 13 C 0.15 5.86 5.15 86.38 0.44 6.30 16 14 N -0.62 -29.17 2.80 -726.94 -2.03 -31.20 16 15 C 0.18 8.54 8.98 127.77 1.15 9.69 16 16 C -0.24 -12.49 8.15 84.03 0.69 -11.80 16 17 H 0.08 3.88 6.72 -2.91 -0.02 3.86 16 18 C -0.06 -3.27 5.08 84.86 0.43 -2.83 16 19 N -0.94 -55.20 10.72 21.65 0.23 -54.97 16 20 Si 0.96 43.40 29.58 68.60 2.03 45.43 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 24 C -0.12 -2.95 5.36 30.66 0.16 -2.79 16 25 C 0.12 2.80 6.43 86.35 0.56 3.36 16 26 H 0.10 1.41 6.41 -2.91 -0.02 1.39 16 27 H 0.11 1.18 8.06 -2.91 -0.02 1.15 16 28 H 0.13 1.41 8.06 -2.91 -0.02 1.38 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.78 5.51 -2.39 -0.01 1.77 16 32 H 0.38 6.31 8.05 -74.06 -0.60 5.72 16 33 H 0.11 1.61 7.68 -2.39 -0.02 1.60 16 34 H 0.12 1.55 7.95 -2.39 -0.02 1.53 16 35 H 0.10 1.73 5.93 -2.39 -0.01 1.72 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 2.62 5.95 -2.39 -0.01 2.61 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.04 1.50 8.07 -2.39 -0.02 1.48 16 41 H 0.04 1.39 8.04 -2.39 -0.02 1.38 16 42 H 0.00 -0.07 7.36 -2.38 -0.02 -0.09 16 43 H 0.02 0.81 7.31 -2.39 -0.02 0.79 16 44 H 0.03 1.17 8.03 -2.39 -0.02 1.15 16 45 H 0.24 13.97 8.31 -92.71 -0.77 13.20 16 46 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.08 2.07 7.00 -2.39 -0.02 2.05 16 Total: -1.00 -67.88 375.31 3.45 -64.43 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.32 Total: 18.92 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 6.59 Total: 6.25 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -4.24 Total: -103.03 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.25 Total: -32.00 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -67.88 3.45 -64.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753362200.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.468 kcal (2) G-P(sol) polarization free energy of solvation -67.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds