Wall clock time and date at job start Tue Mar 31 2020 10:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 C 1.52997 * 109.46768 * 240.00195 * 3 2 1 5 5 O 1.42903 * 109.46900 * 359.97438 * 3 2 1 6 6 C 1.52995 * 109.47451 * 119.99804 * 3 2 1 7 7 C 1.50696 * 109.46932 * 180.02562 * 6 3 2 8 8 O 1.21287 * 120.00323 * 359.97438 * 7 6 3 9 9 N 1.34781 * 119.99890 * 180.02562 * 7 6 3 10 10 C 1.46925 * 120.62920 * 359.71953 * 9 7 6 11 11 C 1.53625 * 108.54342 * 126.37067 * 10 9 7 12 12 C 1.53036 * 109.24257 * 54.85443 * 11 10 9 13 13 C 1.53049 * 109.53860 * 298.50968 * 12 11 10 14 14 H 1.09000 * 109.49707 * 301.41643 * 13 12 11 15 15 C 1.53001 * 109.52445 * 181.33175 * 13 12 11 16 16 C 1.52998 * 109.46685 * 65.14925 * 15 13 12 17 17 N 1.46500 * 109.46768 * 179.97438 * 16 15 13 18 18 C 1.36943 * 120.00187 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99537 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00195 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00065 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00049 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47139 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47239 * 119.99870 * 22 20 18 25 25 H 1.48500 * 109.47106 * 240.00158 * 22 20 18 26 26 C 1.46928 * 120.63156 * 179.97438 * 9 7 6 27 27 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 29 29 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47763 * 59.99678 * 4 3 2 31 31 H 1.09002 * 109.47013 * 179.97438 * 4 3 2 32 32 H 1.09005 * 109.47200 * 299.99038 * 4 3 2 33 33 H 0.96697 * 113.99602 * 60.00579 * 5 3 2 34 34 H 1.08997 * 109.46864 * 300.00066 * 6 3 2 35 35 H 1.08999 * 109.47043 * 59.99814 * 6 3 2 36 36 H 1.09000 * 109.58687 * 246.20061 * 10 9 7 37 37 H 1.08997 * 109.58774 * 6.62583 * 10 9 7 38 38 H 1.08999 * 109.63031 * 294.86127 * 11 10 9 39 39 H 1.08997 * 109.43478 * 174.72632 * 11 10 9 40 40 H 1.09000 * 109.45934 * 178.49566 * 12 11 10 41 41 H 1.09000 * 109.46141 * 58.53218 * 12 11 10 42 42 H 1.09001 * 109.46994 * 185.14750 * 15 13 12 43 43 H 1.08999 * 109.47319 * 305.14990 * 15 13 12 44 44 H 1.09001 * 109.47262 * 299.99661 * 16 15 13 45 45 H 1.09001 * 109.47857 * 60.00315 * 16 15 13 46 46 H 0.97001 * 120.00400 * 359.97438 * 17 16 15 47 47 H 0.97001 * 119.99547 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.58657 * 353.37473 * 26 9 7 49 49 H 1.08998 * 109.58895 * 113.65374 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 -1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3862 1.2492 7 6 3.6961 2.6916 1.2494 8 8 3.5446 3.4793 0.3397 9 7 4.5388 2.9832 2.2600 10 6 4.7291 2.0414 3.3715 11 6 6.2320 1.7609 3.5224 12 6 6.9783 3.0867 3.6877 13 6 6.7725 3.9490 2.4401 14 1 7.1346 3.4123 1.5632 15 6 7.5459 5.2604 2.5917 16 6 9.0466 4.9656 2.6322 17 7 9.7872 6.2214 2.7767 18 6 11.1552 6.2066 2.8368 19 1 11.6882 5.2691 2.7772 20 6 11.8569 7.3965 2.9732 21 7 11.2073 8.5390 3.0453 22 14 13.7230 7.3763 3.0544 23 1 14.2079 5.9764 2.9516 24 1 14.2760 8.1749 1.9311 25 1 14.1687 7.9615 4.3444 26 6 5.2804 4.2516 2.2740 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9354 0.0044 29 1 1.8500 -0.9353 0.0004 30 1 2.3165 1.3283 -2.1393 31 1 3.4878 2.3302 -1.2495 32 1 3.6515 0.5576 -1.2492 33 1 0.5434 2.4034 0.7643 34 1 2.3164 1.3285 2.1391 35 1 3.6514 0.5577 1.2493 36 1 4.3421 2.4791 4.2917 37 1 4.2022 1.1117 3.1569 38 1 6.5991 1.2449 2.6353 39 1 6.3982 1.1378 4.4012 40 1 8.0421 2.8903 3.8219 41 1 6.5936 3.6136 4.5609 42 1 7.3262 5.9116 1.7456 43 1 7.2473 5.7535 3.5168 44 1 9.2663 4.3145 3.4783 45 1 9.3453 4.4726 1.7071 46 1 9.3085 7.0634 2.8299 47 1 11.6977 9.3704 3.1409 48 1 5.1174 4.7806 1.3350 49 1 4.9358 4.8673 3.1048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753547024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:59 Heat of formation + Delta-G solvation = -64.466573 kcal Electronic energy + Delta-G solvation = -26157.676756 eV Core-core repulsion = 22506.138828 eV Total energy + Delta-G solvation = -3651.537928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.66305 -38.88230 -37.41389 -35.34655 -33.56780 -33.27963 -32.01175 -31.65466 -30.72287 -28.68322 -27.25851 -25.45084 -24.06237 -22.95063 -22.32473 -21.38435 -20.07341 -19.94433 -19.08130 -17.53871 -17.05341 -16.92859 -16.10641 -15.85194 -15.26808 -14.86175 -14.79597 -14.72351 -14.36983 -14.09173 -13.49481 -13.39409 -13.23514 -13.11724 -12.98241 -12.89884 -12.55249 -12.43029 -12.09731 -11.95424 -11.77779 -11.43440 -11.37767 -11.21977 -11.02470 -10.94791 -10.76889 -10.56353 -10.46550 -10.40445 -10.15267 -9.98120 -9.84888 -9.69891 -9.59091 -8.84649 -8.66325 -6.87982 -5.73710 -3.02127 1.78478 2.52499 2.83862 3.44801 3.50001 3.52573 3.91901 4.19137 4.34963 4.53488 4.60189 4.61485 4.68757 4.77134 4.82506 4.86414 4.97668 5.08289 5.16445 5.25230 5.30664 5.41815 5.42586 5.57050 5.60110 5.62851 5.65083 5.75324 5.76774 5.80476 5.93610 6.00220 6.07790 6.12169 6.17686 6.26150 6.28155 6.34118 6.37539 6.46460 6.53577 6.89946 6.94792 7.29101 7.40321 7.72578 8.11518 8.45589 9.56303 10.15748 10.50037 11.49407 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.031223 B = 0.002241 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.569256 B =12492.104245 C =12804.383426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.187 4.187 3 C 0.177 3.823 4 C -0.148 4.148 5 O -0.537 6.537 6 C -0.164 4.164 7 C 0.514 3.486 8 O -0.517 6.517 9 N -0.614 5.614 10 C 0.106 3.894 11 C -0.135 4.135 12 C -0.118 4.118 13 C -0.094 4.094 14 H 0.073 0.927 15 C -0.120 4.120 16 C 0.155 3.845 17 N -0.735 5.735 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.017 4.017 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.116 3.884 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.367 0.633 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.020 0.980 45 H 0.015 0.985 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.092 0.908 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.392 -20.662 -0.425 30.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.205 4.205 3 C 0.135 3.865 4 C -0.205 4.205 5 O -0.342 6.342 6 C -0.204 4.204 7 C 0.301 3.699 8 O -0.393 6.393 9 N -0.348 5.348 10 C -0.017 4.017 11 C -0.173 4.173 12 C -0.156 4.156 13 C -0.114 4.114 14 H 0.091 0.909 15 C -0.158 4.158 16 C 0.027 3.973 17 N -0.379 5.379 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.006 4.006 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.134 0.866 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.214 0.786 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.038 0.962 45 H 0.033 0.967 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.111 0.889 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.000 -20.160 -1.488 29.877 hybrid contribution 0.684 -0.037 0.813 1.063 sum -21.316 -20.197 -0.675 29.372 Atomic orbital electron populations 1.23877 0.96039 1.02415 0.99450 1.23622 0.96760 0.98795 1.01344 1.19870 0.87996 0.84029 0.94599 1.21947 0.98862 1.04437 0.95254 1.86752 1.49996 1.48891 1.48530 1.22415 1.00344 0.97153 1.00507 1.20394 0.79464 0.88360 0.81650 1.90695 1.63889 1.49954 1.34749 1.48184 1.43674 1.20152 1.22757 1.21858 0.97241 0.92855 0.89744 1.22008 0.94396 0.98519 1.02380 1.21654 1.01267 0.94787 0.97853 1.21434 0.94002 0.97304 0.98658 0.90893 1.21701 0.96248 0.95666 1.02204 1.20663 0.88974 0.90153 0.97494 1.42399 1.03638 1.03288 1.88560 1.19284 0.82886 0.92910 1.41794 0.91193 1.24757 0.97958 0.95384 1.03146 1.69676 1.34111 0.96989 1.57479 0.86112 0.85671 0.77198 0.77194 1.20585 1.21872 1.21883 1.21698 0.90740 0.84652 1.03466 0.88218 0.87702 0.86643 0.92171 0.88646 0.91876 0.78598 0.88862 0.88067 0.91283 0.90159 0.91507 0.90801 0.90626 0.91736 0.91705 0.91797 0.96240 0.96666 0.78325 0.93589 0.88933 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 13.93 29.02 0.40 -0.68 16 2 C -0.19 -1.22 8.77 -36.02 -0.32 -1.54 16 3 C 0.18 1.52 0.94 -91.77 -0.09 1.43 16 4 C -0.15 -1.50 8.50 37.16 0.32 -1.19 16 5 O -0.54 -5.50 10.85 -53.50 -0.58 -6.08 16 6 C -0.16 -1.22 3.28 -27.89 -0.09 -1.31 16 7 C 0.51 5.81 7.26 -10.99 -0.08 5.73 16 8 O -0.52 -7.92 12.37 -12.71 -0.16 -8.08 16 9 N -0.61 -6.40 2.97 -172.53 -0.51 -6.92 16 10 C 0.11 0.79 6.37 -3.49 -0.02 0.76 16 11 C -0.13 -1.11 6.10 -26.39 -0.16 -1.27 16 12 C -0.12 -1.31 4.96 -26.69 -0.13 -1.44 16 13 C -0.09 -1.21 2.33 -90.52 -0.21 -1.42 16 14 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 15 C -0.12 -1.94 4.80 -26.73 -0.13 -2.07 16 16 C 0.15 3.15 6.02 -4.04 -0.02 3.12 16 17 N -0.73 -19.18 5.60 -59.91 -0.34 -19.52 16 18 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 21 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 22 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 C 0.12 1.43 5.71 -3.73 -0.02 1.41 16 27 H 0.10 0.47 8.06 -52.49 -0.42 0.04 16 28 H 0.10 0.62 6.41 -52.48 -0.34 0.29 16 29 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.25 5.51 -51.93 -0.29 0.97 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.37 2.44 8.05 45.56 0.37 2.80 16 34 H 0.09 0.51 7.93 -51.93 -0.41 0.10 16 35 H 0.10 0.58 7.70 -51.93 -0.40 0.18 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.93 6.51 -51.93 -0.34 0.59 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.40 6.55 -51.93 -0.34 0.06 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.38 10.50 7.67 -40.82 -0.31 10.18 16 47 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.09 1.32 7.01 -51.93 -0.36 0.95 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -34.61 381.26 -8.71 -43.32 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.77 Total: 7.91 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -0.80 Total: -6.01 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.12 Total: -54.55 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.74 Total: -14.16 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.61 -8.71 -43.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753547024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.146 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds