Wall clock time and date at job start Tue Mar 31 2020 10:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 C 1.52997 * 109.46768 * 240.00195 * 3 2 1 5 5 O 1.42903 * 109.46900 * 359.97438 * 3 2 1 6 6 C 1.52995 * 109.47451 * 119.99804 * 3 2 1 7 7 C 1.50696 * 109.46932 * 180.02562 * 6 3 2 8 8 O 1.21287 * 120.00323 * 359.97438 * 7 6 3 9 9 N 1.34781 * 119.99890 * 180.02562 * 7 6 3 10 10 C 1.46925 * 120.62920 * 359.71953 * 9 7 6 11 11 C 1.53625 * 108.54342 * 126.37067 * 10 9 7 12 12 C 1.53036 * 109.24257 * 54.85443 * 11 10 9 13 13 C 1.53049 * 109.53860 * 298.50968 * 12 11 10 14 14 H 1.09000 * 109.49707 * 301.41643 * 13 12 11 15 15 C 1.53001 * 109.52445 * 181.33175 * 13 12 11 16 16 C 1.52998 * 109.46685 * 65.14925 * 15 13 12 17 17 N 1.46500 * 109.46768 * 179.97438 * 16 15 13 18 18 C 1.36943 * 120.00187 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99537 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00195 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00065 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00049 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47139 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47239 * 119.99870 * 22 20 18 25 25 H 1.48500 * 109.47106 * 240.00158 * 22 20 18 26 26 C 1.46928 * 120.63156 * 179.97438 * 9 7 6 27 27 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 29 29 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47763 * 59.99678 * 4 3 2 31 31 H 1.09002 * 109.47013 * 179.97438 * 4 3 2 32 32 H 1.09005 * 109.47200 * 299.99038 * 4 3 2 33 33 H 0.96697 * 113.99602 * 60.00579 * 5 3 2 34 34 H 1.08997 * 109.46864 * 300.00066 * 6 3 2 35 35 H 1.08999 * 109.47043 * 59.99814 * 6 3 2 36 36 H 1.09000 * 109.58687 * 246.20061 * 10 9 7 37 37 H 1.08997 * 109.58774 * 6.62583 * 10 9 7 38 38 H 1.08999 * 109.63031 * 294.86127 * 11 10 9 39 39 H 1.08997 * 109.43478 * 174.72632 * 11 10 9 40 40 H 1.09000 * 109.45934 * 178.49566 * 12 11 10 41 41 H 1.09000 * 109.46141 * 58.53218 * 12 11 10 42 42 H 1.09001 * 109.46994 * 185.14750 * 15 13 12 43 43 H 1.08999 * 109.47319 * 305.14990 * 15 13 12 44 44 H 1.09001 * 109.47262 * 299.99661 * 16 15 13 45 45 H 1.09001 * 109.47857 * 60.00315 * 16 15 13 46 46 H 0.97001 * 120.00400 * 359.97438 * 17 16 15 47 47 H 0.97001 * 119.99547 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.58657 * 353.37473 * 26 9 7 49 49 H 1.08998 * 109.58895 * 113.65374 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 -1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3862 1.2492 7 6 3.6961 2.6916 1.2494 8 8 3.5446 3.4793 0.3397 9 7 4.5388 2.9832 2.2600 10 6 4.7291 2.0414 3.3715 11 6 6.2320 1.7609 3.5224 12 6 6.9783 3.0867 3.6877 13 6 6.7725 3.9490 2.4401 14 1 7.1346 3.4123 1.5632 15 6 7.5459 5.2604 2.5917 16 6 9.0466 4.9656 2.6322 17 7 9.7872 6.2214 2.7767 18 6 11.1552 6.2066 2.8368 19 1 11.6882 5.2691 2.7772 20 6 11.8569 7.3965 2.9732 21 7 11.2073 8.5390 3.0453 22 14 13.7230 7.3763 3.0544 23 1 14.2079 5.9764 2.9516 24 1 14.2760 8.1749 1.9311 25 1 14.1687 7.9615 4.3444 26 6 5.2804 4.2516 2.2740 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9354 0.0044 29 1 1.8500 -0.9353 0.0004 30 1 2.3165 1.3283 -2.1393 31 1 3.4878 2.3302 -1.2495 32 1 3.6515 0.5576 -1.2492 33 1 0.5434 2.4034 0.7643 34 1 2.3164 1.3285 2.1391 35 1 3.6514 0.5577 1.2493 36 1 4.3421 2.4791 4.2917 37 1 4.2022 1.1117 3.1569 38 1 6.5991 1.2449 2.6353 39 1 6.3982 1.1378 4.4012 40 1 8.0421 2.8903 3.8219 41 1 6.5936 3.6136 4.5609 42 1 7.3262 5.9116 1.7456 43 1 7.2473 5.7535 3.5168 44 1 9.2663 4.3145 3.4783 45 1 9.3453 4.4726 1.7071 46 1 9.3085 7.0634 2.8299 47 1 11.6977 9.3704 3.1409 48 1 5.1174 4.7806 1.3350 49 1 4.9358 4.8673 3.1048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753547024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:58 Heat of formation + Delta-G solvation = -87.733497 kcal Electronic energy + Delta-G solvation = -26158.685685 eV Core-core repulsion = 22506.138828 eV Total energy + Delta-G solvation = -3652.546858 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.47823 -39.67146 -38.34401 -36.90733 -35.02942 -33.94988 -33.16249 -32.57650 -31.98899 -29.74627 -28.50929 -26.30223 -25.77508 -23.88297 -23.31663 -22.71540 -21.16074 -20.56654 -19.88269 -19.13059 -18.19189 -17.74798 -16.90798 -16.71037 -16.49677 -16.02618 -15.97760 -15.61905 -15.48927 -15.30710 -14.99664 -14.74261 -14.34975 -14.09139 -13.97030 -13.77282 -13.29693 -13.19760 -13.10275 -12.98515 -12.91520 -12.64282 -12.48642 -12.40931 -12.40627 -12.08450 -11.98339 -11.95295 -11.83106 -11.65440 -11.49543 -11.26967 -11.06738 -10.93308 -10.50484 -10.30174 -9.54802 -9.02178 -7.97502 -5.27175 1.33522 1.45545 1.47252 1.57389 1.71013 2.05294 2.54414 3.32875 3.35927 3.55073 3.69470 3.75945 3.79643 3.90302 4.05095 4.09285 4.12874 4.15934 4.36400 4.41103 4.43489 4.52344 4.58664 4.61690 4.65673 4.71577 4.76925 4.85756 4.86814 4.88426 4.90084 4.95685 5.04439 5.14974 5.17882 5.23766 5.32622 5.36290 5.44385 5.46642 5.52542 5.60849 5.69039 5.84212 6.25162 6.50592 6.88829 7.29669 7.30477 8.06887 8.29921 9.26485 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.031223 B = 0.002241 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.569256 B =12492.104245 C =12804.383426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.189 4.189 3 C 0.173 3.827 4 C -0.150 4.150 5 O -0.564 6.564 6 C -0.154 4.154 7 C 0.506 3.494 8 O -0.567 6.567 9 N -0.613 5.613 10 C 0.103 3.897 11 C -0.129 4.129 12 C -0.117 4.117 13 C -0.082 4.082 14 H 0.061 0.939 15 C -0.108 4.108 16 C 0.155 3.845 17 N -0.750 5.750 18 C -0.247 4.247 19 H 0.076 0.924 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.977 3.023 23 H -0.265 1.265 24 H -0.293 1.293 25 H -0.290 1.290 26 C 0.122 3.878 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.134 0.866 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.380 0.620 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.030 0.970 45 H 0.010 0.990 46 H 0.373 0.627 47 H 0.252 0.748 48 H 0.064 0.936 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.053 -23.884 1.011 33.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.207 4.207 3 C 0.132 3.868 4 C -0.207 4.207 5 O -0.371 6.371 6 C -0.194 4.194 7 C 0.295 3.705 8 O -0.446 6.446 9 N -0.346 5.346 10 C -0.019 4.019 11 C -0.167 4.167 12 C -0.155 4.155 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.147 4.147 16 C 0.029 3.971 17 N -0.393 5.393 18 C -0.378 4.378 19 H 0.094 0.906 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.220 1.220 25 H -0.217 1.217 26 C -0.001 4.001 27 H 0.134 0.866 28 H 0.118 0.882 29 H 0.152 0.848 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.229 0.771 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.048 0.952 45 H 0.028 0.972 46 H 0.204 0.796 47 H 0.061 0.939 48 H 0.083 0.917 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.675 -23.451 -0.025 32.620 hybrid contribution 0.843 0.959 0.333 1.319 sum -21.832 -22.491 0.308 31.347 Atomic orbital electron populations 1.24028 0.96038 1.02983 0.98464 1.23556 0.96824 0.98139 1.02172 1.19918 0.87982 0.84727 0.94215 1.21932 0.99229 1.03305 0.96217 1.86719 1.50729 1.50017 1.49662 1.22436 1.00549 0.95264 1.01116 1.21175 0.79231 0.89272 0.80786 1.90691 1.65480 1.51808 1.36620 1.48289 1.42977 1.19793 1.23561 1.22146 0.97026 0.93599 0.89098 1.21983 0.94459 0.96791 1.03437 1.21636 1.01023 0.96228 0.96608 1.21273 0.93886 0.95545 0.99466 0.92029 1.21564 0.94025 0.97451 1.01613 1.20816 0.90906 0.88080 0.97316 1.42661 1.03373 1.04675 1.88566 1.19700 0.84265 0.93186 1.40695 0.90586 1.25655 1.02857 0.95082 1.03601 1.69839 1.35856 0.97484 1.58995 0.85014 0.79815 0.77792 0.76777 1.18885 1.22044 1.21724 1.21432 0.90517 0.85969 1.02228 0.86641 0.88190 0.84796 0.93067 0.92110 0.89942 0.77120 0.85927 0.85474 0.89954 0.86783 0.91814 0.88255 0.92010 0.91286 0.93190 0.91681 0.95177 0.97177 0.79587 0.93945 0.91738 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 13.93 67.79 0.94 -0.74 16 2 C -0.19 -1.94 8.77 25.65 0.23 -1.71 16 3 C 0.17 2.70 0.94 -11.54 -0.01 2.69 16 4 C -0.15 -3.02 8.50 71.98 0.61 -2.41 16 5 O -0.56 -11.33 10.85 -131.52 -1.43 -12.75 16 6 C -0.15 -1.84 3.28 29.85 0.10 -1.74 16 7 C 0.51 10.94 7.26 87.66 0.64 11.58 16 8 O -0.57 -18.02 12.37 14.41 0.18 -17.84 16 9 N -0.61 -11.83 2.97 -818.13 -2.43 -14.25 16 10 C 0.10 1.13 6.37 86.51 0.55 1.69 16 11 C -0.13 -1.69 6.10 30.82 0.19 -1.51 16 12 C -0.12 -2.41 4.96 30.62 0.15 -2.25 16 13 C -0.08 -2.10 2.33 -10.73 -0.03 -2.13 16 14 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 15 C -0.11 -3.59 4.80 30.59 0.15 -3.44 16 16 C 0.15 6.40 6.02 86.38 0.52 6.92 16 17 N -0.75 -39.97 5.60 -343.45 -1.92 -41.89 16 18 C -0.25 -14.26 9.99 84.03 0.84 -13.43 16 19 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 20 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 21 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 22 Si 0.98 47.04 29.55 68.60 2.03 49.06 16 23 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 26 C 0.12 3.00 5.71 86.35 0.49 3.49 16 27 H 0.12 0.73 8.06 -2.91 -0.02 0.70 16 28 H 0.10 1.03 6.41 -2.91 -0.02 1.01 16 29 H 0.13 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.68 5.51 -2.39 -0.01 1.67 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.38 4.70 8.05 -74.06 -0.60 4.10 16 34 H 0.12 0.78 7.93 -2.39 -0.02 0.76 16 35 H 0.13 0.89 7.70 -2.39 -0.02 0.87 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 0.54 5.93 -2.39 -0.01 0.53 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 1.44 6.51 -2.39 -0.02 1.43 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.03 1.20 6.55 -2.39 -0.02 1.19 16 45 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.37 21.09 7.67 -92.71 -0.71 20.38 16 47 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 48 H 0.06 1.96 7.01 -2.38 -0.02 1.94 16 49 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -77.73 381.26 2.18 -75.56 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.37 Total: 30.19 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.84 Total: -7.26 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -4.07 Total: -116.95 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -1.25 Total: -30.60 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Total: -77.73 2.18 -75.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753547024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.177 kcal (2) G-P(sol) polarization free energy of solvation -77.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds