Wall clock time and date at job start Tue Mar 31 2020 10:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 H 1.09002 * 109.49918 * 305.00302 * 3 2 1 5 5 C 1.53196 * 109.49572 * 65.06819 * 3 2 1 6 6 N 1.46919 * 108.77552 * 174.61517 * 5 3 2 7 7 C 1.34783 * 120.62565 * 126.41356 * 6 5 3 8 8 O 1.21275 * 120.00357 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99799 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47100 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46799 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.50697 * 119.99920 * 179.97438 * 12 11 10 14 14 O 1.20763 * 119.99721 * 359.97438 * 12 11 10 15 15 C 1.46927 * 118.74315 * 306.39314 * 6 5 3 16 16 C 1.53185 * 108.77460 * 53.60638 * 15 6 5 17 17 C 1.53039 * 109.49913 * 184.93649 * 3 2 1 18 18 H 1.09006 * 109.46255 * 298.67520 * 17 3 2 19 19 N 1.46498 * 109.45960 * 58.63447 * 17 3 2 20 20 C 1.36938 * 119.99821 * 205.00298 * 19 17 3 21 21 H 1.07998 * 120.00173 * 359.97438 * 20 19 17 22 22 C 1.38818 * 120.00015 * 179.97438 * 20 19 17 23 23 N 1.31627 * 119.99687 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00184 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47295 * 60.00386 * 24 22 20 26 26 H 1.48505 * 109.47337 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47159 * 299.99988 * 24 22 20 28 28 H 1.08996 * 109.47052 * 299.99929 * 1 2 3 29 29 H 1.09007 * 109.47385 * 59.99555 * 1 2 3 30 30 H 1.08996 * 109.47558 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47051 * 240.00557 * 2 1 3 32 32 H 1.08997 * 109.47069 * 120.00885 * 2 1 3 33 33 H 1.09001 * 109.58261 * 294.40557 * 5 3 2 34 34 H 1.09006 * 109.58617 * 54.68333 * 5 3 2 35 35 H 1.08999 * 109.46786 * 300.00316 * 9 7 6 36 36 H 1.09008 * 109.46619 * 59.99968 * 9 7 6 37 37 H 1.09004 * 109.46888 * 299.99937 * 10 9 7 38 38 H 1.09001 * 109.46909 * 59.99991 * 10 9 7 39 39 H 1.09004 * 109.47090 * 299.99496 * 11 10 9 40 40 H 1.08995 * 109.47613 * 59.99682 * 11 10 9 41 41 H 1.08998 * 109.47395 * 90.00015 * 13 12 11 42 42 H 1.09005 * 109.47149 * 210.00211 * 13 12 11 43 43 H 1.09003 * 109.46998 * 329.99512 * 13 12 11 44 44 H 1.08996 * 109.58575 * 173.39828 * 15 6 5 45 45 H 1.08994 * 109.58354 * 293.81976 * 15 6 5 46 46 H 1.09008 * 109.49890 * 65.31972 * 16 15 6 47 47 H 1.08998 * 109.50080 * 185.38092 * 16 15 6 48 48 H 0.97004 * 120.00166 * 24.99577 * 19 17 3 49 49 H 0.96998 * 120.00110 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9820 -0.8416 5 6 1.6365 2.1274 1.3096 6 7 2.2425 3.4652 1.3497 7 6 1.4823 4.5571 1.5654 8 8 0.2862 4.4408 1.7282 9 6 2.1187 5.9227 1.6044 10 6 1.0429 6.9796 1.8620 11 6 1.6890 8.3659 1.9009 12 6 0.6295 9.4070 2.1553 13 6 1.0087 10.8629 2.2404 14 8 -0.5235 9.0743 2.2910 15 6 3.6928 3.5902 1.1507 16 6 4.0733 2.8889 -0.1570 17 6 3.5654 1.4449 -0.1241 18 1 4.0002 0.9267 0.7306 19 7 3.9556 0.7609 -1.3594 20 6 5.1939 0.1851 -1.4614 21 1 5.8829 0.2356 -0.6313 22 6 5.5635 -0.4636 -2.6317 23 7 4.7235 -0.5255 -3.6432 24 14 7.2528 -1.2484 -2.7710 25 1 7.4036 -2.2883 -1.7217 26 1 7.4001 -1.8717 -4.1109 27 1 8.2979 -0.2089 -2.5916 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5140 0.8899 33 1 0.5512 2.2163 1.3560 34 1 1.9914 1.5377 2.1548 35 1 2.8596 5.9555 2.4032 36 1 2.6046 6.1244 0.6496 37 1 0.3024 6.9465 1.0628 38 1 0.5567 6.7780 2.8165 39 1 2.4298 8.3993 2.6999 40 1 2.1750 8.5673 0.9463 41 1 0.9529 11.3115 1.2485 42 1 0.3219 11.3787 2.9116 43 1 2.0256 10.9518 2.6227 44 1 3.9641 4.6443 1.0924 45 1 4.2176 3.1212 1.9829 46 1 3.6197 3.4149 -0.9973 47 1 5.1575 2.8912 -0.2690 48 1 3.3369 0.7158 -2.1052 49 1 4.9816 -0.9791 -4.4609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754479843.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:00 Heat of formation + Delta-G solvation = -87.896024 kcal Electronic energy + Delta-G solvation = -26224.162231 eV Core-core repulsion = 22571.608326 eV Total energy + Delta-G solvation = -3652.553905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.23588 -39.65405 -37.85420 -34.71782 -34.51397 -33.73635 -31.72124 -31.09883 -29.51582 -29.19728 -27.75901 -25.02548 -23.88528 -23.00069 -22.16969 -20.81328 -19.89669 -19.74171 -18.76678 -17.16020 -16.98036 -16.36229 -16.21143 -15.54073 -15.36497 -15.17066 -14.86503 -14.26408 -14.00140 -13.87295 -13.63491 -13.32507 -13.17637 -13.10777 -12.86885 -12.75446 -12.49138 -12.21922 -12.11792 -11.96256 -11.88006 -11.60019 -11.48048 -11.28220 -10.97343 -10.93123 -10.86577 -10.69544 -10.33950 -10.24655 -10.15300 -9.97426 -9.75850 -9.59958 -9.57302 -8.91375 -8.43583 -6.98580 -5.79554 -3.08367 1.68469 2.73662 3.10400 3.40574 3.45474 3.46552 3.75036 4.42701 4.55460 4.64833 4.72061 4.83707 4.89975 4.98832 5.03384 5.17947 5.23219 5.23894 5.30346 5.34774 5.36088 5.38976 5.49193 5.57691 5.60412 5.66304 5.69589 5.71762 5.91795 5.92632 6.02458 6.13519 6.16338 6.17455 6.31670 6.36654 6.40965 6.46348 6.58554 6.68807 6.82566 6.96246 7.05138 7.23705 7.56143 7.65754 8.29755 8.38643 9.49921 10.07591 10.42463 11.42770 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.002747 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.172729 B =10191.683616 C =11239.828429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.118 3.882 6 N -0.608 5.608 7 C 0.512 3.488 8 O -0.548 6.548 9 C -0.140 4.140 10 C -0.097 4.097 11 C -0.174 4.174 12 C 0.350 3.650 13 C -0.205 4.205 14 O -0.454 6.454 15 C 0.107 3.893 16 C -0.152 4.152 17 C 0.184 3.816 18 H 0.047 0.953 19 N -0.720 5.720 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.287 1.287 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.384 0.616 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 17.197 12.282 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.004 4.004 6 N -0.341 5.341 7 C 0.300 3.700 8 O -0.426 6.426 9 C -0.180 4.180 10 C -0.135 4.135 11 C -0.211 4.211 12 C 0.226 3.774 13 C -0.263 4.263 14 O -0.328 6.328 15 C -0.016 4.016 16 C -0.193 4.193 17 C 0.073 3.927 18 H 0.065 0.935 19 N -0.360 5.360 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.214 1.214 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.467 16.857 12.442 21.423 hybrid contribution 1.161 -0.405 -0.535 1.341 sum -3.306 16.452 11.907 20.576 Atomic orbital electron populations 1.21843 0.96812 1.01018 1.01324 1.21451 0.94381 0.95738 1.03420 1.21776 0.97585 0.96246 0.96787 0.91279 1.21725 0.99451 0.81598 0.97659 1.48203 1.08523 1.06830 1.70524 1.20621 0.86952 0.86231 0.76201 1.90686 1.14987 1.86674 1.50217 1.21705 0.99710 0.92403 1.04152 1.21157 0.97115 0.90790 1.04414 1.22194 0.99148 0.95287 1.04498 1.24658 0.89519 0.92200 0.71051 1.22308 1.04055 0.95267 1.04629 1.90453 1.22291 1.84105 1.35923 1.21865 0.79505 1.01109 0.99169 1.22696 1.02142 0.99353 0.95156 1.20190 0.90812 0.90506 0.91173 0.93478 1.42408 1.16441 1.64426 1.12769 1.19162 0.91786 1.27442 0.98596 0.91314 1.24733 0.98132 1.01537 0.96461 1.69650 1.35274 1.48273 1.04798 0.86300 0.84136 0.79173 0.76739 1.21316 1.21765 1.21353 0.93213 0.93006 0.93180 0.89819 0.92493 0.89228 0.91836 0.88972 0.88746 0.90634 0.90717 0.88310 0.88189 0.88711 0.89861 0.89687 0.90457 0.91544 0.92217 0.90603 0.78198 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.67 37.16 0.36 -1.82 16 2 C -0.11 -1.83 5.31 -26.73 -0.14 -1.97 16 3 C -0.10 -1.71 1.92 -90.50 -0.17 -1.88 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.75 5.33 -3.71 -0.02 1.73 16 6 N -0.61 -8.38 2.97 -172.77 -0.51 -8.90 16 7 C 0.51 7.22 7.70 -10.98 -0.08 7.14 16 8 O -0.55 -9.78 15.39 5.56 0.09 -9.70 16 9 C -0.14 -1.34 4.05 -27.88 -0.11 -1.46 16 10 C -0.10 -0.99 3.79 -26.73 -0.10 -1.09 16 11 C -0.17 -1.12 5.62 -27.88 -0.16 -1.28 16 12 C 0.35 2.86 7.27 -29.03 -0.21 2.65 16 13 C -0.21 -0.96 10.25 36.00 0.37 -0.59 16 14 O -0.45 -5.88 16.72 6.00 0.10 -5.78 16 15 C 0.11 1.30 6.34 -3.71 -0.02 1.27 16 16 C -0.15 -2.43 5.66 -26.58 -0.15 -2.58 16 17 C 0.18 3.39 2.20 -67.86 -0.15 3.24 16 18 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 19 N -0.72 -16.95 4.33 -53.35 -0.23 -17.18 16 20 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 21 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 24 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H 0.05 0.66 6.70 -51.93 -0.35 0.32 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.63 7.22 -51.92 -0.37 1.25 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.41 5.72 -51.93 -0.30 1.11 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.67 7.94 -51.93 -0.41 0.26 16 36 H 0.09 0.78 7.69 -51.92 -0.40 0.38 16 37 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 38 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.21 8.12 -51.93 -0.42 -0.21 16 44 H 0.08 0.72 5.93 -51.93 -0.31 0.42 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 47 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 48 H 0.38 9.83 7.51 -40.82 -0.31 9.52 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -33.10 388.77 -8.58 -41.69 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -8.74 Total: 7.43 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -0.84 Total: -3.51 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.02 Total: -52.74 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.19 Total: -15.47 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.10 -8.58 -41.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754479843.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.209 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds