Wall clock time and date at job start Tue Mar 31 2020 10:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 H 1.09002 * 109.49918 * 305.00302 * 3 2 1 5 5 C 1.53196 * 109.49572 * 65.06819 * 3 2 1 6 6 N 1.46919 * 108.77552 * 174.61517 * 5 3 2 7 7 C 1.34783 * 120.62565 * 126.41356 * 6 5 3 8 8 O 1.21275 * 120.00357 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99799 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47100 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46799 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.50697 * 119.99920 * 179.97438 * 12 11 10 14 14 O 1.20763 * 119.99721 * 359.97438 * 12 11 10 15 15 C 1.46927 * 118.74315 * 306.39314 * 6 5 3 16 16 C 1.53185 * 108.77460 * 53.60638 * 15 6 5 17 17 C 1.53039 * 109.49913 * 184.93649 * 3 2 1 18 18 H 1.09006 * 109.46255 * 298.67520 * 17 3 2 19 19 N 1.46498 * 109.45960 * 58.63447 * 17 3 2 20 20 C 1.36938 * 119.99821 * 205.00298 * 19 17 3 21 21 H 1.07998 * 120.00173 * 359.97438 * 20 19 17 22 22 C 1.38818 * 120.00015 * 179.97438 * 20 19 17 23 23 N 1.31627 * 119.99687 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00184 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47295 * 60.00386 * 24 22 20 26 26 H 1.48505 * 109.47337 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47159 * 299.99988 * 24 22 20 28 28 H 1.08996 * 109.47052 * 299.99929 * 1 2 3 29 29 H 1.09007 * 109.47385 * 59.99555 * 1 2 3 30 30 H 1.08996 * 109.47558 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47051 * 240.00557 * 2 1 3 32 32 H 1.08997 * 109.47069 * 120.00885 * 2 1 3 33 33 H 1.09001 * 109.58261 * 294.40557 * 5 3 2 34 34 H 1.09006 * 109.58617 * 54.68333 * 5 3 2 35 35 H 1.08999 * 109.46786 * 300.00316 * 9 7 6 36 36 H 1.09008 * 109.46619 * 59.99968 * 9 7 6 37 37 H 1.09004 * 109.46888 * 299.99937 * 10 9 7 38 38 H 1.09001 * 109.46909 * 59.99991 * 10 9 7 39 39 H 1.09004 * 109.47090 * 299.99496 * 11 10 9 40 40 H 1.08995 * 109.47613 * 59.99682 * 11 10 9 41 41 H 1.08998 * 109.47395 * 90.00015 * 13 12 11 42 42 H 1.09005 * 109.47149 * 210.00211 * 13 12 11 43 43 H 1.09003 * 109.46998 * 329.99512 * 13 12 11 44 44 H 1.08996 * 109.58575 * 173.39828 * 15 6 5 45 45 H 1.08994 * 109.58354 * 293.81976 * 15 6 5 46 46 H 1.09008 * 109.49890 * 65.31972 * 16 15 6 47 47 H 1.08998 * 109.50080 * 185.38092 * 16 15 6 48 48 H 0.97004 * 120.00166 * 24.99577 * 19 17 3 49 49 H 0.96998 * 120.00110 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9820 -0.8416 5 6 1.6365 2.1274 1.3096 6 7 2.2425 3.4652 1.3497 7 6 1.4823 4.5571 1.5654 8 8 0.2862 4.4408 1.7282 9 6 2.1187 5.9227 1.6044 10 6 1.0429 6.9796 1.8620 11 6 1.6890 8.3659 1.9009 12 6 0.6295 9.4070 2.1553 13 6 1.0087 10.8629 2.2404 14 8 -0.5235 9.0743 2.2910 15 6 3.6928 3.5902 1.1507 16 6 4.0733 2.8889 -0.1570 17 6 3.5654 1.4449 -0.1241 18 1 4.0002 0.9267 0.7306 19 7 3.9556 0.7609 -1.3594 20 6 5.1939 0.1851 -1.4614 21 1 5.8829 0.2356 -0.6313 22 6 5.5635 -0.4636 -2.6317 23 7 4.7235 -0.5255 -3.6432 24 14 7.2528 -1.2484 -2.7710 25 1 7.4036 -2.2883 -1.7217 26 1 7.4001 -1.8717 -4.1109 27 1 8.2979 -0.2089 -2.5916 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5140 0.8899 33 1 0.5512 2.2163 1.3560 34 1 1.9914 1.5377 2.1548 35 1 2.8596 5.9555 2.4032 36 1 2.6046 6.1244 0.6496 37 1 0.3024 6.9465 1.0628 38 1 0.5567 6.7780 2.8165 39 1 2.4298 8.3993 2.6999 40 1 2.1750 8.5673 0.9463 41 1 0.9529 11.3115 1.2485 42 1 0.3219 11.3787 2.9116 43 1 2.0256 10.9518 2.6227 44 1 3.9641 4.6443 1.0924 45 1 4.2176 3.1212 1.9829 46 1 3.6197 3.4149 -0.9973 47 1 5.1575 2.8912 -0.2690 48 1 3.3369 0.7158 -2.1052 49 1 4.9816 -0.9791 -4.4609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754479843.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:59 Heat of formation + Delta-G solvation = -108.569828 kcal Electronic energy + Delta-G solvation = -26225.058714 eV Core-core repulsion = 22571.608326 eV Total energy + Delta-G solvation = -3653.450389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.35237 -40.40562 -39.17053 -36.16318 -35.49518 -35.07898 -33.42523 -31.69969 -31.03262 -30.31634 -28.66681 -26.52370 -25.19287 -24.44569 -23.13139 -22.17856 -21.11768 -20.50872 -19.88950 -19.01838 -18.10767 -17.16270 -17.10139 -16.75247 -16.39625 -16.24428 -15.84085 -15.57588 -15.49480 -15.11883 -14.85471 -14.72197 -14.49674 -14.34773 -13.89650 -13.61019 -13.36928 -13.10140 -13.06585 -13.01452 -12.80838 -12.72518 -12.69362 -12.64417 -12.52596 -12.31104 -12.19671 -12.01145 -11.83111 -11.69716 -11.57859 -11.52292 -11.08111 -10.93707 -10.73684 -10.48334 -9.62051 -8.94097 -7.89106 -5.16673 1.09800 1.49738 1.51854 1.57692 1.66463 2.05823 2.59594 3.20425 3.43839 3.56014 3.77853 3.82448 4.01363 4.06363 4.08761 4.12531 4.15192 4.28209 4.36412 4.40162 4.47373 4.50619 4.59479 4.63416 4.69542 4.74988 4.78353 4.81334 4.82176 4.87395 4.90347 4.93412 5.02461 5.07464 5.16295 5.19080 5.27533 5.29742 5.37114 5.40632 5.47619 5.53920 5.60228 5.69123 6.31864 6.48663 6.67595 7.21490 7.38379 8.14936 8.38090 9.34277 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.002747 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.172729 B =10191.683616 C =11239.828429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.092 4.092 4 H 0.048 0.952 5 C 0.124 3.876 6 N -0.610 5.610 7 C 0.503 3.497 8 O -0.594 6.594 9 C -0.131 4.131 10 C -0.095 4.095 11 C -0.167 4.167 12 C 0.347 3.653 13 C -0.200 4.200 14 O -0.517 6.517 15 C 0.114 3.886 16 C -0.144 4.144 17 C 0.178 3.822 18 H 0.047 0.953 19 N -0.732 5.732 20 C -0.229 4.229 21 H 0.079 0.921 22 C -0.078 4.078 23 N -0.972 5.972 24 Si 0.968 3.032 25 H -0.280 1.280 26 H -0.302 1.302 27 H -0.276 1.276 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.039 0.961 38 H 0.046 0.954 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.075 0.925 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.070 0.930 48 H 0.369 0.631 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.921 19.199 14.226 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.112 4.112 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.341 5.341 7 C 0.294 3.706 8 O -0.475 6.475 9 C -0.170 4.170 10 C -0.133 4.133 11 C -0.204 4.204 12 C 0.227 3.773 13 C -0.257 4.257 14 O -0.395 6.395 15 C -0.008 4.008 16 C -0.185 4.185 17 C 0.069 3.931 18 H 0.065 0.935 19 N -0.371 5.371 20 C -0.361 4.361 21 H 0.097 0.903 22 C -0.270 4.270 23 N -0.623 5.623 24 Si 0.798 3.202 25 H -0.206 1.206 26 H -0.229 1.229 27 H -0.202 1.202 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.148 0.852 36 H 0.136 0.864 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.126 0.874 42 H 0.094 0.906 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.104 0.896 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.201 0.799 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.945 18.900 14.441 23.865 hybrid contribution 0.343 -1.017 -1.089 1.529 sum -1.602 17.883 13.352 22.375 Atomic orbital electron populations 1.21775 0.95134 1.01853 1.01533 1.21361 0.95863 0.95447 1.01902 1.21617 0.96115 0.96233 0.97225 0.93330 1.21560 0.99041 0.82583 0.96736 1.48310 1.09314 1.06331 1.70194 1.21519 0.86486 0.87730 0.74896 1.90673 1.17227 1.87404 1.52213 1.21780 0.99731 0.88744 1.06739 1.21062 0.96929 0.93745 1.01573 1.22250 0.98901 0.91967 1.07278 1.25413 0.88833 0.94348 0.68671 1.22324 1.05549 0.92418 1.05415 1.90451 1.24768 1.85208 1.39113 1.21965 0.78308 1.03319 0.97248 1.22490 1.01424 0.97381 0.97162 1.20441 0.92042 0.91708 0.88865 0.93501 1.42596 1.15463 1.65058 1.13944 1.19560 0.92523 1.25667 0.98312 0.90345 1.25500 1.01604 1.03298 0.96620 1.69822 1.37143 1.50114 1.05226 0.85282 0.80425 0.78444 0.76042 1.20642 1.22896 1.20227 0.91991 0.93761 0.92056 0.93449 0.91716 0.90315 0.90357 0.85192 0.86353 0.94198 0.93475 0.84760 0.85337 0.87372 0.90615 0.86552 0.86397 0.89624 0.93631 0.91164 0.79910 0.94353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 9.67 71.98 0.70 -3.48 16 2 C -0.11 -3.58 5.31 30.59 0.16 -3.42 16 3 C -0.09 -3.03 1.92 -10.72 -0.02 -3.05 16 4 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 5 C 0.12 3.53 5.33 86.37 0.46 3.99 16 6 N -0.61 -15.42 2.97 -818.92 -2.43 -17.85 16 7 C 0.50 13.34 7.70 87.66 0.67 14.01 16 8 O -0.59 -21.41 15.39 -3.01 -0.05 -21.45 16 9 C -0.13 -2.05 4.05 29.85 0.12 -1.93 16 10 C -0.09 -1.82 3.79 30.59 0.12 -1.70 16 11 C -0.17 -1.59 5.62 29.85 0.17 -1.42 16 12 C 0.35 5.16 7.27 29.10 0.21 5.37 16 13 C -0.20 -1.32 10.25 71.24 0.73 -0.59 16 14 O -0.52 -13.84 16.72 -1.46 -0.02 -13.87 16 15 C 0.11 2.32 6.34 86.36 0.55 2.87 16 16 C -0.14 -4.30 5.66 30.69 0.17 -4.13 16 17 C 0.18 6.46 2.20 45.04 0.10 6.56 16 18 H 0.05 1.72 8.08 -2.38 -0.02 1.70 16 19 N -0.73 -34.97 4.33 -322.70 -1.40 -36.37 16 20 C -0.23 -12.02 9.93 84.03 0.83 -11.19 16 21 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 22 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 23 N -0.97 -58.73 13.06 21.65 0.28 -58.44 16 24 Si 0.97 44.96 29.55 68.60 2.03 46.99 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 26 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 28 H 0.06 1.62 6.70 -2.39 -0.02 1.61 16 29 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.92 7.22 -2.38 -0.02 1.91 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 2.46 5.72 -2.39 -0.01 2.44 16 34 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.13 1.13 7.94 -2.39 -0.02 1.11 16 36 H 0.12 1.37 7.69 -2.38 -0.02 1.35 16 37 H 0.04 1.03 8.06 -2.38 -0.02 1.01 16 38 H 0.05 1.15 8.06 -2.39 -0.02 1.13 16 39 H 0.13 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.07 0.64 8.14 -2.38 -0.02 0.63 16 43 H 0.12 0.05 8.12 -2.39 -0.02 0.03 16 44 H 0.12 1.52 5.93 -2.39 -0.01 1.51 16 45 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.37 19.66 7.51 -92.71 -0.70 18.96 16 49 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -77.76 388.77 4.07 -73.69 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.22 Total: 29.29 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 5.44 Total: -1.99 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -3.55 Total: -112.66 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.07 Total: -35.32 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -77.76 4.07 -73.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754479843.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.876 kcal (2) G-P(sol) polarization free energy of solvation -77.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds