Wall clock time and date at job start Tue Mar 31 2020 10:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46944 * 2 1 4 4 H 1.09000 * 109.52160 * 54.92083 * 3 2 1 5 5 C 1.53191 * 109.49978 * 294.83808 * 3 2 1 6 6 N 1.46920 * 108.77616 * 185.41207 * 5 3 2 7 7 C 1.34781 * 120.63026 * 233.58959 * 6 5 3 8 8 O 1.21280 * 119.99993 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99743 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.46816 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.46960 * 179.97438 * 11 10 9 13 13 C 1.50700 * 120.00173 * 180.02562 * 12 11 10 14 14 O 1.20756 * 120.00197 * 0.02562 * 12 11 10 15 15 C 1.46928 * 118.73706 * 53.61307 * 6 5 3 16 16 C 1.53184 * 108.77408 * 306.38660 * 15 6 5 17 17 C 1.53039 * 109.31381 * 54.63954 * 16 15 6 18 18 H 1.09003 * 109.45459 * 178.62011 * 17 16 15 19 19 N 1.46502 * 109.46009 * 58.65178 * 17 16 15 20 20 C 1.36930 * 120.00159 * 84.93455 * 19 17 16 21 21 H 1.08000 * 119.99841 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00182 * 179.97438 * 20 19 17 23 23 N 1.31622 * 119.99887 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00212 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 89.99941 * 24 22 20 26 26 H 1.48503 * 109.47261 * 330.00122 * 24 22 20 27 27 H 1.48500 * 109.47454 * 210.00115 * 24 22 20 28 28 H 1.09006 * 109.47343 * 60.00012 * 1 2 3 29 29 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47473 * 299.99525 * 1 2 3 31 31 H 1.09005 * 109.47064 * 240.00606 * 2 1 3 32 32 H 1.08992 * 109.47831 * 120.00199 * 2 1 3 33 33 H 1.08999 * 109.58873 * 305.20441 * 5 3 2 34 34 H 1.09009 * 109.58461 * 65.62762 * 5 3 2 35 35 H 1.08995 * 109.46908 * 299.99907 * 9 7 6 36 36 H 1.09002 * 109.46694 * 60.00378 * 9 7 6 37 37 H 1.09004 * 109.47022 * 300.00160 * 10 9 7 38 38 H 1.08994 * 109.46785 * 59.99937 * 10 9 7 39 39 H 1.08993 * 109.47531 * 300.00409 * 11 10 9 40 40 H 1.09000 * 109.46916 * 59.99954 * 11 10 9 41 41 H 1.08998 * 109.46863 * 359.97438 * 13 12 11 42 42 H 1.08994 * 109.47800 * 120.00167 * 13 12 11 43 43 H 1.09000 * 109.47070 * 240.00192 * 13 12 11 44 44 H 1.09002 * 109.58595 * 66.17799 * 15 6 5 45 45 H 1.09006 * 109.58324 * 186.45689 * 15 6 5 46 46 H 1.09003 * 109.50550 * 294.68732 * 16 15 6 47 47 H 1.09000 * 109.49658 * 174.58754 * 16 15 6 48 48 H 0.97008 * 119.99482 * 264.93511 * 19 17 16 49 49 H 0.96993 * 120.00105 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9828 0.8407 5 6 1.6385 2.1269 -1.3105 6 7 2.2449 3.4644 -1.3506 7 6 1.4855 4.5565 -1.5680 8 8 0.2895 4.4405 -1.7323 9 6 2.1227 5.9217 -1.6069 10 6 1.0477 6.9789 -1.8678 11 6 1.6945 8.3649 -1.9067 12 6 0.6359 9.4060 -2.1643 13 6 1.0159 10.8618 -2.2500 14 8 -0.5169 9.0738 -2.3021 15 6 3.6951 3.5889 -1.1498 16 6 4.0735 2.8883 0.1588 17 6 3.5652 1.4451 0.1257 18 1 3.8546 0.9371 1.0457 19 7 4.1507 0.7477 -1.0219 20 6 5.3884 0.1720 -0.9146 21 1 5.9329 0.2318 0.0162 22 6 5.9430 -0.4893 -2.0018 23 7 5.2792 -0.5626 -3.1360 24 14 7.6318 -1.2740 -1.8557 25 1 7.4872 -2.6774 -1.3918 26 1 8.4491 -0.5114 -0.8781 27 1 8.3019 -1.2573 -3.1808 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.9963 1.5378 -2.1549 34 1 0.5531 2.2162 -1.3585 35 1 2.6073 6.1238 -0.6518 36 1 2.8645 5.9538 -2.4048 37 1 0.5635 6.7765 -2.8232 38 1 0.3056 6.9468 -1.0703 39 1 2.1785 8.5670 -0.9513 40 1 2.4370 8.3971 -2.7040 41 1 2.0906 10.9661 -2.1011 42 1 0.7453 11.2509 -3.2315 43 1 0.4866 11.4215 -1.4788 44 1 4.2207 3.1190 -1.9812 45 1 3.9672 4.6430 -1.0944 46 1 3.6191 3.4148 0.9981 47 1 5.1576 2.8895 0.2718 48 1 3.6614 0.6937 -1.8578 49 1 4.4024 -0.1549 -3.2121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754479844.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:04 Heat of formation + Delta-G solvation = -85.295738 kcal Electronic energy + Delta-G solvation = -26667.868610 eV Core-core repulsion = 23015.427462 eV Total energy + Delta-G solvation = -3652.441148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.22104 -39.64418 -37.97497 -34.55628 -34.44585 -33.92721 -31.80229 -31.07144 -29.48115 -28.82775 -27.70823 -24.92464 -23.85174 -23.45743 -22.35369 -20.89560 -19.87031 -19.46338 -18.33182 -17.37421 -16.93401 -16.32073 -16.15106 -15.49031 -15.38681 -15.18716 -14.89626 -14.43194 -14.15174 -13.73370 -13.69400 -13.37533 -13.34436 -13.10557 -12.86217 -12.78851 -12.46533 -12.30421 -12.05680 -12.03073 -11.83233 -11.56341 -11.46935 -11.19803 -10.95266 -10.90872 -10.71590 -10.58492 -10.32997 -10.22235 -10.03056 -9.92757 -9.88188 -9.50091 -9.18363 -8.94635 -8.27351 -7.06286 -6.12728 -3.13135 1.70815 2.82565 3.20609 3.48755 3.52780 3.66738 3.78234 4.48883 4.63675 4.68381 4.75549 4.88989 4.93908 5.02179 5.06613 5.18309 5.25473 5.26778 5.29860 5.37244 5.39210 5.44666 5.52918 5.59826 5.62938 5.66600 5.70316 5.75301 5.84323 5.96127 5.98419 6.07839 6.11908 6.21300 6.26407 6.31313 6.33700 6.48727 6.56571 6.60403 6.69695 6.82934 6.93995 7.26223 7.68869 7.78427 8.38848 8.71988 9.18703 10.05171 10.20905 11.35011 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.003105 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.641834 B = 9014.158752 C =10158.030860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.067 0.933 5 C 0.119 3.881 6 N -0.604 5.604 7 C 0.510 3.490 8 O -0.551 6.551 9 C -0.139 4.139 10 C -0.096 4.096 11 C -0.174 4.174 12 C 0.351 3.649 13 C -0.205 4.205 14 O -0.455 6.455 15 C 0.114 3.886 16 C -0.149 4.149 17 C 0.184 3.816 18 H 0.051 0.949 19 N -0.730 5.730 20 C -0.328 4.328 21 H 0.064 0.936 22 C -0.044 4.044 23 N -0.944 5.944 24 Si 1.080 2.920 25 H -0.297 1.297 26 H -0.296 1.296 27 H -0.289 1.289 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.049 0.951 47 H 0.074 0.926 48 H 0.367 0.633 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 17.373 5.398 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.124 4.124 4 H 0.085 0.915 5 C -0.003 4.003 6 N -0.336 5.336 7 C 0.299 3.701 8 O -0.430 6.430 9 C -0.179 4.179 10 C -0.134 4.134 11 C -0.211 4.211 12 C 0.227 3.773 13 C -0.262 4.262 14 O -0.329 6.329 15 C -0.008 4.008 16 C -0.191 4.191 17 C 0.074 3.926 18 H 0.069 0.931 19 N -0.373 5.373 20 C -0.459 4.459 21 H 0.082 0.918 22 C -0.242 4.242 23 N -0.589 5.589 24 Si 0.912 3.088 25 H -0.224 1.224 26 H -0.222 1.222 27 H -0.215 1.215 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.068 0.932 47 H 0.093 0.907 48 H 0.201 0.799 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.545 16.254 4.608 17.495 hybrid contribution -0.883 0.880 0.700 1.430 sum -5.428 17.133 5.308 18.740 Atomic orbital electron populations 1.21853 0.96655 1.01114 1.01442 1.21403 0.94415 0.95721 1.03159 1.21772 0.97373 0.96131 0.97162 0.91478 1.21638 0.98918 0.81871 0.97900 1.48170 1.08692 1.06611 1.70173 1.20606 0.86933 0.86245 0.76358 1.90675 1.15043 1.86741 1.50523 1.21693 0.99719 0.92440 1.04049 1.21152 0.97076 0.90784 1.04397 1.22213 0.99188 0.95304 1.04432 1.24663 0.89500 0.92180 0.71000 1.22278 1.03915 0.95347 1.04659 1.90448 1.22330 1.84114 1.35995 1.21711 0.79215 1.00108 0.99797 1.22504 1.01828 0.99214 0.95508 1.20148 0.89557 0.90582 0.92316 0.93109 1.42482 1.19413 1.65162 1.10272 1.20036 0.94648 1.31596 0.99606 0.91834 1.25689 1.05580 1.00179 0.92742 1.70862 1.14492 1.47689 1.25888 0.83223 0.74758 0.75744 0.75123 1.22436 1.22247 1.21515 0.92779 0.93082 0.93272 0.90940 0.91967 0.91425 0.89505 0.88968 0.88902 0.90678 0.90746 0.88261 0.88202 0.90004 0.89145 0.89178 0.90157 0.91019 0.93249 0.90721 0.79880 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.15 0.36 -1.77 16 2 C -0.11 -1.76 5.19 -26.73 -0.14 -1.90 16 3 C -0.10 -1.71 2.14 -90.50 -0.19 -1.90 16 4 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 5 C 0.12 2.02 5.03 -3.71 -0.02 2.00 16 6 N -0.60 -9.58 2.97 -172.77 -0.51 -10.09 16 7 C 0.51 7.98 7.70 -10.98 -0.08 7.90 16 8 O -0.55 -10.54 15.39 5.56 0.09 -10.45 16 9 C -0.14 -1.53 4.05 -27.88 -0.11 -1.64 16 10 C -0.10 -1.08 3.79 -26.73 -0.10 -1.18 16 11 C -0.17 -1.26 5.55 -27.89 -0.15 -1.41 16 12 C 0.35 3.07 7.27 -29.04 -0.21 2.85 16 13 C -0.20 -1.05 10.33 36.01 0.37 -0.67 16 14 O -0.46 -6.13 16.72 6.00 0.10 -6.03 16 15 C 0.11 1.73 6.08 -3.71 -0.02 1.70 16 16 C -0.15 -2.39 5.78 -26.62 -0.15 -2.55 16 17 C 0.18 3.40 2.53 -67.89 -0.17 3.23 16 18 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 19 N -0.73 -16.53 3.72 -53.38 -0.20 -16.73 16 20 C -0.33 -8.55 9.93 -15.06 -0.15 -8.70 16 21 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 22 C -0.04 -1.22 5.50 -17.43 -0.10 -1.32 16 23 N -0.94 -28.05 13.70 55.49 0.76 -27.29 16 24 Si 1.08 25.09 29.92 -169.99 -5.09 20.01 16 25 H -0.30 -6.79 7.11 56.52 0.40 -6.38 16 26 H -0.30 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H 0.05 0.76 6.70 -51.93 -0.35 0.41 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.26 6.64 -51.93 -0.34 0.92 16 34 H 0.09 1.51 5.73 -51.92 -0.30 1.21 16 35 H 0.09 0.83 7.69 -51.93 -0.40 0.43 16 36 H 0.09 0.88 7.94 -51.93 -0.41 0.47 16 37 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 38 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.24 8.00 -51.93 -0.42 -0.18 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 1.45 7.74 -51.93 -0.40 1.05 16 45 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.37 8.75 4.77 -40.82 -0.19 8.56 16 49 H 0.25 7.46 6.77 -40.82 -0.28 7.18 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -33.13 383.34 -8.44 -41.57 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -8.49 Total: 8.59 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.88 Total: -5.35 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.05 Total: -54.10 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.19 Total: -16.48 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.09 Total: 20.01 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.13 -8.44 -41.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754479844.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.725 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds