Wall clock time and date at job start Tue Mar 31 2020 10:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46944 * 2 1 4 4 H 1.09000 * 109.52160 * 54.92083 * 3 2 1 5 5 C 1.53191 * 109.49978 * 294.83808 * 3 2 1 6 6 N 1.46920 * 108.77616 * 185.41207 * 5 3 2 7 7 C 1.34781 * 120.63026 * 233.58959 * 6 5 3 8 8 O 1.21280 * 119.99993 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99743 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.46816 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.46960 * 179.97438 * 11 10 9 13 13 C 1.50700 * 120.00173 * 180.02562 * 12 11 10 14 14 O 1.20756 * 120.00197 * 0.02562 * 12 11 10 15 15 C 1.46928 * 118.73706 * 53.61307 * 6 5 3 16 16 C 1.53184 * 108.77408 * 306.38660 * 15 6 5 17 17 C 1.53039 * 109.31381 * 54.63954 * 16 15 6 18 18 H 1.09003 * 109.45459 * 178.62011 * 17 16 15 19 19 N 1.46502 * 109.46009 * 58.65178 * 17 16 15 20 20 C 1.36930 * 120.00159 * 84.93455 * 19 17 16 21 21 H 1.08000 * 119.99841 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00182 * 179.97438 * 20 19 17 23 23 N 1.31622 * 119.99887 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00212 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 89.99941 * 24 22 20 26 26 H 1.48503 * 109.47261 * 330.00122 * 24 22 20 27 27 H 1.48500 * 109.47454 * 210.00115 * 24 22 20 28 28 H 1.09006 * 109.47343 * 60.00012 * 1 2 3 29 29 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47473 * 299.99525 * 1 2 3 31 31 H 1.09005 * 109.47064 * 240.00606 * 2 1 3 32 32 H 1.08992 * 109.47831 * 120.00199 * 2 1 3 33 33 H 1.08999 * 109.58873 * 305.20441 * 5 3 2 34 34 H 1.09009 * 109.58461 * 65.62762 * 5 3 2 35 35 H 1.08995 * 109.46908 * 299.99907 * 9 7 6 36 36 H 1.09002 * 109.46694 * 60.00378 * 9 7 6 37 37 H 1.09004 * 109.47022 * 300.00160 * 10 9 7 38 38 H 1.08994 * 109.46785 * 59.99937 * 10 9 7 39 39 H 1.08993 * 109.47531 * 300.00409 * 11 10 9 40 40 H 1.09000 * 109.46916 * 59.99954 * 11 10 9 41 41 H 1.08998 * 109.46863 * 359.97438 * 13 12 11 42 42 H 1.08994 * 109.47800 * 120.00167 * 13 12 11 43 43 H 1.09000 * 109.47070 * 240.00192 * 13 12 11 44 44 H 1.09002 * 109.58595 * 66.17799 * 15 6 5 45 45 H 1.09006 * 109.58324 * 186.45689 * 15 6 5 46 46 H 1.09003 * 109.50550 * 294.68732 * 16 15 6 47 47 H 1.09000 * 109.49658 * 174.58754 * 16 15 6 48 48 H 0.97008 * 119.99482 * 264.93511 * 19 17 16 49 49 H 0.96993 * 120.00105 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9828 0.8407 5 6 1.6385 2.1269 -1.3105 6 7 2.2449 3.4644 -1.3506 7 6 1.4855 4.5565 -1.5680 8 8 0.2895 4.4405 -1.7323 9 6 2.1227 5.9217 -1.6069 10 6 1.0477 6.9789 -1.8678 11 6 1.6945 8.3649 -1.9067 12 6 0.6359 9.4060 -2.1643 13 6 1.0159 10.8618 -2.2500 14 8 -0.5169 9.0738 -2.3021 15 6 3.6951 3.5889 -1.1498 16 6 4.0735 2.8883 0.1588 17 6 3.5652 1.4451 0.1257 18 1 3.8546 0.9371 1.0457 19 7 4.1507 0.7477 -1.0219 20 6 5.3884 0.1720 -0.9146 21 1 5.9329 0.2318 0.0162 22 6 5.9430 -0.4893 -2.0018 23 7 5.2792 -0.5626 -3.1360 24 14 7.6318 -1.2740 -1.8557 25 1 7.4872 -2.6774 -1.3918 26 1 8.4491 -0.5114 -0.8781 27 1 8.3019 -1.2573 -3.1808 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.9963 1.5378 -2.1549 34 1 0.5531 2.2162 -1.3585 35 1 2.6073 6.1238 -0.6518 36 1 2.8645 5.9538 -2.4048 37 1 0.5635 6.7765 -2.8232 38 1 0.3056 6.9468 -1.0703 39 1 2.1785 8.5670 -0.9513 40 1 2.4370 8.3971 -2.7040 41 1 2.0906 10.9661 -2.1011 42 1 0.7453 11.2509 -3.2315 43 1 0.4866 11.4215 -1.4788 44 1 4.2207 3.1190 -1.9812 45 1 3.9672 4.6430 -1.0944 46 1 3.6191 3.4148 0.9981 47 1 5.1576 2.8895 0.2718 48 1 3.6614 0.6937 -1.8578 49 1 4.4024 -0.1549 -3.2121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754479844.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:03 Heat of formation + Delta-G solvation = -105.435757 kcal Electronic energy + Delta-G solvation = -26668.741947 eV Core-core repulsion = 23015.427462 eV Total energy + Delta-G solvation = -3653.314485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.48839 -40.44525 -39.35743 -36.09233 -35.63406 -35.18338 -33.45892 -31.72218 -30.88579 -30.18090 -28.71295 -26.24981 -25.41099 -25.13531 -23.29209 -22.24754 -20.81226 -20.50264 -19.77627 -19.16989 -18.19573 -17.21998 -17.18379 -16.81969 -16.46840 -16.29091 -15.92372 -15.75986 -15.48906 -15.29330 -14.93194 -14.86011 -14.57145 -14.36575 -14.11675 -13.65164 -13.39407 -13.23377 -13.10895 -13.02625 -12.74880 -12.72810 -12.68557 -12.57906 -12.39758 -12.19070 -12.10422 -11.87444 -11.74198 -11.68745 -11.64945 -11.44007 -11.05488 -10.94956 -10.77300 -10.50729 -9.64549 -9.01203 -8.29326 -5.22551 1.07238 1.60602 1.61351 1.70715 1.84329 1.99148 2.75754 3.17185 3.47581 3.50033 3.71016 3.74747 3.93142 3.97180 4.03007 4.05348 4.10850 4.20957 4.28398 4.33487 4.36536 4.48541 4.53273 4.54491 4.59128 4.66574 4.71955 4.76469 4.79349 4.83244 4.88258 4.92188 4.97326 5.08495 5.13518 5.15289 5.17762 5.24752 5.25246 5.30819 5.35526 5.42044 5.61039 5.70668 6.44959 6.56980 6.65320 7.14796 7.17226 8.08490 8.21410 9.21964 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.003105 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.641834 B = 9014.158752 C =10158.030860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.085 0.915 5 C 0.124 3.876 6 N -0.605 5.605 7 C 0.503 3.497 8 O -0.593 6.593 9 C -0.130 4.130 10 C -0.093 4.093 11 C -0.168 4.168 12 C 0.349 3.651 13 C -0.199 4.199 14 O -0.517 6.517 15 C 0.119 3.881 16 C -0.142 4.142 17 C 0.176 3.824 18 H 0.043 0.957 19 N -0.736 5.736 20 C -0.313 4.313 21 H 0.067 0.933 22 C -0.106 4.106 23 N -0.980 5.980 24 Si 1.125 2.875 25 H -0.293 1.293 26 H -0.271 1.271 27 H -0.299 1.299 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.041 0.959 38 H 0.047 0.953 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.047 0.953 45 H 0.117 0.883 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.358 0.642 49 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 19.818 7.322 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.112 4.112 4 H 0.103 0.897 5 C 0.001 3.999 6 N -0.337 5.337 7 C 0.293 3.707 8 O -0.475 6.475 9 C -0.169 4.169 10 C -0.131 4.131 11 C -0.205 4.205 12 C 0.229 3.771 13 C -0.256 4.256 14 O -0.395 6.395 15 C -0.003 4.003 16 C -0.182 4.182 17 C 0.068 3.932 18 H 0.061 0.939 19 N -0.379 5.379 20 C -0.444 4.444 21 H 0.085 0.915 22 C -0.297 4.297 23 N -0.629 5.629 24 Si 0.951 3.049 25 H -0.220 1.220 26 H -0.196 1.196 27 H -0.226 1.226 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.132 0.868 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.065 0.935 45 H 0.135 0.865 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.191 0.809 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.763 18.744 6.591 20.060 hybrid contribution -1.498 0.129 0.160 1.512 sum -4.260 18.873 6.750 20.491 Atomic orbital electron populations 1.21782 0.94688 1.01996 1.01849 1.21338 0.96134 0.95367 1.01495 1.21664 0.95950 0.96280 0.97282 0.89714 1.21433 0.98504 0.82716 0.97258 1.48250 1.09101 1.06191 1.70119 1.21547 0.86511 0.87692 0.74913 1.90661 1.17137 1.87455 1.52203 1.21770 0.99657 0.88747 1.06720 1.21054 0.96870 0.93640 1.01575 1.22273 0.98933 0.91961 1.07292 1.25395 0.88754 0.94324 0.68638 1.22292 1.05978 0.92410 1.04933 1.90446 1.24773 1.85210 1.39096 1.21714 0.78178 1.02407 0.97954 1.22372 1.01465 0.97293 0.97089 1.20391 0.90739 0.91840 0.90243 0.93913 1.42595 1.18578 1.65576 1.11154 1.20332 0.95367 1.29628 0.99100 0.91525 1.26931 1.08500 1.01622 0.92656 1.70972 1.14571 1.50027 1.27379 0.82630 0.71665 0.75470 0.75087 1.22010 1.19581 1.22595 0.93406 0.92042 0.91727 0.94170 0.91942 0.94076 0.90143 0.85478 0.86488 0.94020 0.93442 0.84833 0.85296 0.86849 0.88902 0.88731 0.93498 0.86479 0.90273 0.91374 0.80873 0.94836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.67 71.98 0.70 -3.29 16 2 C -0.11 -3.43 5.19 30.59 0.16 -3.27 16 3 C -0.09 -2.96 2.14 -10.71 -0.02 -2.98 16 4 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 5 C 0.12 4.28 5.03 86.36 0.43 4.72 16 6 N -0.60 -18.56 2.97 -818.90 -2.43 -20.99 16 7 C 0.50 15.15 7.70 87.66 0.67 15.83 16 8 O -0.59 -23.05 15.39 -3.03 -0.05 -23.09 16 9 C -0.13 -2.43 4.05 29.85 0.12 -2.31 16 10 C -0.09 -1.96 3.79 30.60 0.12 -1.85 16 11 C -0.17 -1.85 5.55 29.85 0.17 -1.69 16 12 C 0.35 5.52 7.27 29.10 0.21 5.74 16 13 C -0.20 -1.46 10.33 71.24 0.74 -0.72 16 14 O -0.52 -14.26 16.72 -1.44 -0.02 -14.28 16 15 C 0.12 3.35 6.08 86.36 0.53 3.87 16 16 C -0.14 -4.18 5.78 30.67 0.18 -4.00 16 17 C 0.18 6.38 2.53 45.02 0.11 6.49 16 18 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 19 N -0.74 -33.86 3.72 -322.81 -1.20 -35.06 16 20 C -0.31 -16.34 9.93 84.03 0.83 -15.50 16 21 H 0.07 3.40 7.83 -2.91 -0.02 3.38 16 22 C -0.11 -5.91 5.50 84.86 0.47 -5.44 16 23 N -0.98 -59.99 13.70 21.65 0.30 -59.70 16 24 Si 1.12 50.64 29.92 68.60 2.05 52.69 16 25 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 H 0.05 1.36 6.70 -2.38 -0.02 1.34 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.04 1.56 7.70 -2.38 -0.02 1.54 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 1.63 6.64 -2.39 -0.02 1.61 16 34 H 0.08 2.88 5.73 -2.38 -0.01 2.87 16 35 H 0.13 1.57 7.69 -2.39 -0.02 1.55 16 36 H 0.12 1.71 7.94 -2.39 -0.02 1.69 16 37 H 0.04 1.14 8.06 -2.38 -0.02 1.12 16 38 H 0.05 1.24 8.06 -2.39 -0.02 1.22 16 39 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.11 0.12 8.00 -2.39 -0.02 0.10 16 42 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 43 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.05 1.66 7.74 -2.39 -0.02 1.64 16 45 H 0.12 2.22 5.93 -2.38 -0.01 2.20 16 46 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 47 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.36 17.84 4.77 -92.70 -0.44 17.40 16 49 H 0.24 14.82 6.77 -92.71 -0.63 14.20 16 Total: -1.00 -77.40 383.34 4.67 -72.73 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.62 Total: 32.12 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 5.41 Total: -4.41 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -3.34 Total: -115.75 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.07 Total: -37.37 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -77.40 4.67 -72.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754479844.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.709 kcal (2) G-P(sol) polarization free energy of solvation -77.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds