Wall clock time and date at job start Tue Mar 31 2020 12:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.89898 * 2 1 4 4 N 1.47199 * 109.91204 * 238.90631 * 2 1 3 5 5 C 1.34775 * 125.66170 * 62.14779 * 4 2 1 6 6 O 1.21286 * 120.00064 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99977 * 179.97438 * 5 4 2 8 8 H 1.08996 * 109.47188 * 40.00225 * 7 5 4 9 9 N 1.46905 * 109.47125 * 160.00003 * 7 5 4 10 10 C 1.53001 * 109.47213 * 279.99847 * 7 5 4 11 11 C 1.52995 * 109.47332 * 174.99878 * 10 7 5 12 12 C 1.50694 * 109.47452 * 180.02562 * 11 10 7 13 13 H 1.08004 * 119.99671 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00375 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99760 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00357 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47248 * 89.99636 * 16 14 12 18 18 H 1.48498 * 109.47272 * 209.99942 * 16 14 12 19 19 H 1.48507 * 109.46912 * 329.99812 * 16 14 12 20 20 C 1.47485 * 108.67293 * 242.41529 * 4 2 1 21 21 C 1.55249 * 104.79783 * 335.66909 * 20 4 2 22 22 C 1.53603 * 109.90889 * 121.28017 * 2 1 3 23 23 C 1.52346 * 110.77053 * 22.56210 * 22 2 1 24 24 C 1.53241 * 109.23296 * 181.49493 * 23 22 2 25 25 O 1.42914 * 109.31234 * 56.34496 * 24 23 22 26 26 C 1.42924 * 114.24959 * 298.24210 * 25 24 23 27 27 C 1.52343 * 110.78150 * 259.12765 * 22 2 1 28 28 H 1.08998 * 109.47236 * 179.64266 * 1 2 3 29 29 H 1.09004 * 109.47195 * 299.63982 * 1 2 3 30 30 H 1.09002 * 109.46811 * 59.63842 * 1 2 3 31 31 H 1.00901 * 110.99869 * 296.04907 * 9 7 5 32 32 H 1.00896 * 110.99543 * 60.00030 * 9 7 5 33 33 H 1.08997 * 109.47039 * 295.00606 * 10 7 5 34 34 H 1.09001 * 109.46723 * 55.00082 * 10 7 5 35 35 H 1.09001 * 109.46974 * 300.00562 * 11 10 7 36 36 H 1.09004 * 109.46840 * 59.99935 * 11 10 7 37 37 H 0.97001 * 119.99959 * 180.02562 * 15 14 12 38 38 H 1.08996 * 110.35197 * 94.62496 * 20 4 2 39 39 H 1.09003 * 110.34625 * 216.90762 * 20 4 2 40 40 H 1.08999 * 111.20759 * 278.51176 * 21 20 4 41 41 H 1.09008 * 110.94905 * 154.58047 * 21 20 4 42 42 H 1.09000 * 109.51298 * 301.42410 * 23 22 2 43 43 H 1.09001 * 109.50831 * 61.56983 * 23 22 2 44 44 H 1.08998 * 109.50468 * 296.39286 * 24 23 22 45 45 H 1.08997 * 109.52538 * 176.30864 * 24 23 22 46 46 H 1.08996 * 109.49689 * 301.81439 * 26 25 24 47 47 H 1.08997 * 109.52894 * 181.72487 * 26 25 24 48 48 H 1.08999 * 109.51386 * 298.43488 * 27 22 2 49 49 H 1.09007 * 109.51397 * 58.57810 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9011 1.0250 0.0000 4 7 2.0314 -0.7147 -1.1851 5 6 1.8180 -0.3572 -2.4670 6 8 1.1620 0.6311 -2.7197 7 6 2.3945 -1.1854 -3.5862 8 1 2.3023 -2.2432 -3.3401 9 7 1.6628 -0.9062 -4.8290 10 6 3.8713 -0.8321 -3.7736 11 6 4.4882 -1.7586 -4.8233 12 6 5.9429 -1.4111 -5.0074 13 1 6.3833 -0.6092 -4.4334 14 6 6.7114 -2.1161 -5.9093 15 7 6.1749 -3.0922 -6.6086 16 14 8.5144 -1.6849 -6.1381 17 1 9.3376 -2.4810 -5.1927 18 1 8.9241 -1.9929 -7.5318 19 1 8.7149 -0.2377 -5.8715 20 6 2.8005 -1.8907 -0.7371 21 6 3.2720 -1.5328 0.6981 22 6 2.0531 -0.7499 1.2343 23 6 1.0003 -1.7133 1.7675 24 6 1.5437 -2.4136 3.0175 25 8 1.9276 -1.4302 3.9809 26 6 2.9692 -0.5549 3.5431 27 6 2.4898 0.2292 2.3167 28 1 -0.3633 -1.0276 -0.0064 29 1 -0.3634 0.5082 0.8932 30 1 -0.3633 0.5195 -0.8868 31 1 0.6979 -1.1912 -4.7523 32 1 1.7331 0.0689 -5.0787 33 1 3.9581 0.2023 -4.1059 34 1 4.3972 -0.9548 -2.8267 35 1 4.4013 -2.7931 -4.4908 36 1 3.9623 -1.6360 -5.7701 37 1 6.7156 -3.5884 -7.2429 38 1 2.1645 -2.7757 -0.7201 39 1 3.6594 -2.0525 -1.3885 40 1 4.1617 -0.9034 0.6754 41 1 3.4478 -2.4334 1.2866 42 1 0.0969 -1.1599 2.0239 43 1 0.7683 -2.4572 1.0053 44 1 2.4105 -3.0173 2.7486 45 1 0.7708 -3.0550 3.4407 46 1 3.8497 -1.1406 3.2790 47 1 3.2213 0.1404 4.3437 48 1 3.3034 0.8491 1.9402 49 1 1.6477 0.8626 2.5959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424179266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:53 Heat of formation + Delta-G solvation = -96.199808 kcal Electronic energy + Delta-G solvation = -27417.504092 eV Core-core repulsion = 23764.590108 eV Total energy + Delta-G solvation = -3652.913984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27812 -39.38289 -37.40249 -35.23969 -33.57955 -32.80845 -31.77655 -31.45942 -30.12131 -28.93746 -26.36368 -25.62248 -23.95986 -23.91665 -23.16926 -21.95472 -20.24078 -18.88156 -18.73158 -17.20243 -16.62078 -16.33749 -16.25044 -16.20274 -15.42410 -15.11330 -15.01410 -14.62731 -14.48827 -14.32433 -13.88431 -13.47311 -13.34815 -13.21219 -13.00332 -12.52923 -12.37916 -12.21164 -12.09162 -12.00527 -11.71649 -11.54677 -11.53284 -11.21098 -10.98818 -10.89508 -10.70245 -10.65191 -10.55140 -10.46863 -10.03401 -9.79468 -9.74501 -9.37661 -9.01285 -8.63538 -8.35651 -8.20591 -5.95210 -3.97451 2.78215 3.01487 3.33071 3.39917 3.43259 3.56249 4.02190 4.23533 4.26552 4.48590 4.66357 4.71967 4.79396 4.82889 4.89909 4.99268 5.02668 5.08547 5.19501 5.23422 5.28375 5.32201 5.34965 5.40328 5.44782 5.50955 5.54371 5.58437 5.67751 5.70667 5.74709 5.82908 5.84694 5.95313 6.01218 6.14375 6.33768 6.46651 6.65560 6.87775 7.07174 7.39897 7.60858 7.74313 7.79114 7.94547 8.11689 8.30054 8.46987 9.10465 9.65784 11.15660 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.003406 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.991566 B = 8219.886529 C = 9253.414388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.074 0.926 4 N -0.613 5.613 5 C 0.500 3.500 6 O -0.553 6.553 7 C 0.082 3.918 8 H 0.095 0.905 9 N -0.807 5.807 10 C -0.095 4.095 11 C 0.032 3.968 12 C -0.522 4.522 13 H 0.051 0.949 14 C 0.058 3.942 15 N -0.892 5.892 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.094 3.906 21 C -0.128 4.128 22 C -0.067 4.067 23 C -0.142 4.142 24 C 0.059 3.941 25 O -0.384 6.384 26 C 0.062 3.938 27 C -0.140 4.140 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.333 0.667 32 H 0.348 0.652 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.012 0.988 36 H 0.035 0.965 37 H 0.259 0.741 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.093 0.907 46 H 0.053 0.947 47 H 0.094 0.906 48 H 0.078 0.922 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.510 1.836 20.657 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.092 0.908 4 N -0.348 5.348 5 C 0.288 3.712 6 O -0.430 6.430 7 C -0.034 4.034 8 H 0.113 0.887 9 N -0.334 5.334 10 C -0.133 4.133 11 C -0.005 4.005 12 C -0.561 4.561 13 H 0.070 0.930 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.029 4.029 21 C -0.166 4.166 22 C -0.068 4.068 23 C -0.179 4.179 24 C -0.018 4.018 25 O -0.303 6.303 26 C -0.015 4.015 27 C -0.178 4.178 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.162 0.838 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.031 0.969 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.111 0.889 46 H 0.072 0.928 47 H 0.112 0.888 48 H 0.096 0.904 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.404 1.764 20.088 22.691 hybrid contribution 0.569 0.802 0.150 0.995 sum -9.835 2.567 20.237 22.647 Atomic orbital electron populations 1.22195 0.95008 1.02246 1.02504 1.21422 0.94438 0.96097 0.83962 0.90839 1.48774 1.53227 1.27785 1.04967 1.22485 0.79492 0.86084 0.83154 1.90633 1.41198 1.27847 1.83357 1.21808 0.97328 0.98657 0.85587 0.88666 1.59021 1.17178 1.26739 1.30496 1.21663 0.88863 1.01592 1.01177 1.19006 0.94400 0.93187 0.93888 1.21269 0.95422 1.17137 1.22251 0.93033 1.24984 0.98243 0.95201 0.95845 1.69972 1.35947 1.21639 1.25581 0.86659 0.85665 0.78708 0.77328 1.20772 1.21244 1.19982 1.22516 0.96332 0.88299 0.95739 1.22966 0.97480 1.00839 0.95325 1.21067 0.95790 0.95762 0.94161 1.22189 0.98735 0.99061 0.97921 1.22689 0.99495 0.90357 0.89221 1.87915 1.55757 1.46042 1.40548 1.22607 0.89800 0.92542 0.96504 1.22086 1.02269 0.98013 0.95402 0.92209 0.91984 0.91435 0.85506 0.83841 0.92905 0.92863 0.96942 0.94680 0.93091 0.91358 0.88990 0.89981 0.89692 0.90250 0.90449 0.92856 0.88859 0.92837 0.88833 0.90377 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 7.97 37.16 0.30 -1.47 16 2 C 0.14 1.64 2.98 -67.23 -0.20 1.44 16 3 H 0.07 0.94 7.81 -51.93 -0.41 0.53 16 4 N -0.61 -8.09 3.07 -163.05 -0.50 -8.59 16 5 C 0.50 8.13 6.89 -10.99 -0.08 8.06 16 6 O -0.55 -10.37 15.33 5.55 0.09 -10.28 16 7 C 0.08 1.40 2.43 -68.86 -0.17 1.23 16 8 H 0.10 1.56 7.67 -51.93 -0.40 1.16 16 9 N -0.81 -13.86 8.44 -5.65 -0.05 -13.91 16 10 C -0.09 -1.92 4.64 -26.73 -0.12 -2.04 16 11 C 0.03 0.82 4.86 -27.89 -0.14 0.68 16 12 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 13 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.09 1.03 6.08 -2.31 -0.01 1.02 16 21 C -0.13 -1.13 5.10 -24.77 -0.13 -1.25 16 22 C -0.07 -0.58 0.47 -154.09 -0.07 -0.65 16 23 C -0.14 -1.09 3.62 -26.94 -0.10 -1.19 16 24 C 0.06 0.43 6.65 37.28 0.25 0.68 16 25 O -0.38 -3.51 10.75 -35.23 -0.38 -3.89 16 26 C 0.06 0.46 6.66 37.29 0.25 0.71 16 27 C -0.14 -1.09 4.77 -26.94 -0.13 -1.22 16 28 H 0.06 0.61 6.61 -51.93 -0.34 0.27 16 29 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 30 H 0.07 0.91 6.92 -51.93 -0.36 0.55 16 31 H 0.33 4.99 9.06 -39.29 -0.36 4.64 16 32 H 0.35 6.07 8.58 -39.29 -0.34 5.73 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 1.02 6.61 -51.93 -0.34 0.67 16 35 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16 39 H 0.09 1.14 6.07 -51.93 -0.32 0.83 16 40 H 0.08 0.75 7.95 -51.93 -0.41 0.34 16 41 H 0.08 0.62 6.30 -51.92 -0.33 0.29 16 42 H 0.08 0.63 6.56 -51.93 -0.34 0.29 16 43 H 0.08 0.60 6.96 -51.93 -0.36 0.23 16 44 H 0.05 0.36 6.54 -51.93 -0.34 0.02 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.37 7.59 -51.93 -0.39 -0.02 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 0.59 8.05 -51.93 -0.42 0.18 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -32.47 368.57 -8.64 -41.11 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.31 Total: 6.83 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.76 Total: -7.40 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.19 Total: -48.50 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.29 Total: -14.17 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.47 -8.64 -41.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424179266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.092 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds