Wall clock time and date at job start Tue Mar 31 2020 12:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.89898 * 2 1 4 4 N 1.47199 * 109.91204 * 238.90631 * 2 1 3 5 5 C 1.34775 * 125.66170 * 62.14779 * 4 2 1 6 6 O 1.21286 * 120.00064 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99977 * 179.97438 * 5 4 2 8 8 H 1.08996 * 109.47188 * 40.00225 * 7 5 4 9 9 N 1.46905 * 109.47125 * 160.00003 * 7 5 4 10 10 C 1.53001 * 109.47213 * 279.99847 * 7 5 4 11 11 C 1.52995 * 109.47332 * 174.99878 * 10 7 5 12 12 C 1.50694 * 109.47452 * 180.02562 * 11 10 7 13 13 H 1.08004 * 119.99671 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00375 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99760 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00357 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47248 * 89.99636 * 16 14 12 18 18 H 1.48498 * 109.47272 * 209.99942 * 16 14 12 19 19 H 1.48507 * 109.46912 * 329.99812 * 16 14 12 20 20 C 1.47485 * 108.67293 * 242.41529 * 4 2 1 21 21 C 1.55249 * 104.79783 * 335.66909 * 20 4 2 22 22 C 1.53603 * 109.90889 * 121.28017 * 2 1 3 23 23 C 1.52346 * 110.77053 * 22.56210 * 22 2 1 24 24 C 1.53241 * 109.23296 * 181.49493 * 23 22 2 25 25 O 1.42914 * 109.31234 * 56.34496 * 24 23 22 26 26 C 1.42924 * 114.24959 * 298.24210 * 25 24 23 27 27 C 1.52343 * 110.78150 * 259.12765 * 22 2 1 28 28 H 1.08998 * 109.47236 * 179.64266 * 1 2 3 29 29 H 1.09004 * 109.47195 * 299.63982 * 1 2 3 30 30 H 1.09002 * 109.46811 * 59.63842 * 1 2 3 31 31 H 1.00901 * 110.99869 * 296.04907 * 9 7 5 32 32 H 1.00896 * 110.99543 * 60.00030 * 9 7 5 33 33 H 1.08997 * 109.47039 * 295.00606 * 10 7 5 34 34 H 1.09001 * 109.46723 * 55.00082 * 10 7 5 35 35 H 1.09001 * 109.46974 * 300.00562 * 11 10 7 36 36 H 1.09004 * 109.46840 * 59.99935 * 11 10 7 37 37 H 0.97001 * 119.99959 * 180.02562 * 15 14 12 38 38 H 1.08996 * 110.35197 * 94.62496 * 20 4 2 39 39 H 1.09003 * 110.34625 * 216.90762 * 20 4 2 40 40 H 1.08999 * 111.20759 * 278.51176 * 21 20 4 41 41 H 1.09008 * 110.94905 * 154.58047 * 21 20 4 42 42 H 1.09000 * 109.51298 * 301.42410 * 23 22 2 43 43 H 1.09001 * 109.50831 * 61.56983 * 23 22 2 44 44 H 1.08998 * 109.50468 * 296.39286 * 24 23 22 45 45 H 1.08997 * 109.52538 * 176.30864 * 24 23 22 46 46 H 1.08996 * 109.49689 * 301.81439 * 26 25 24 47 47 H 1.08997 * 109.52894 * 181.72487 * 26 25 24 48 48 H 1.08999 * 109.51386 * 298.43488 * 27 22 2 49 49 H 1.09007 * 109.51397 * 58.57810 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9011 1.0250 0.0000 4 7 2.0314 -0.7147 -1.1851 5 6 1.8180 -0.3572 -2.4670 6 8 1.1620 0.6311 -2.7197 7 6 2.3945 -1.1854 -3.5862 8 1 2.3023 -2.2432 -3.3401 9 7 1.6628 -0.9062 -4.8290 10 6 3.8713 -0.8321 -3.7736 11 6 4.4882 -1.7586 -4.8233 12 6 5.9429 -1.4111 -5.0074 13 1 6.3833 -0.6092 -4.4334 14 6 6.7114 -2.1161 -5.9093 15 7 6.1749 -3.0922 -6.6086 16 14 8.5144 -1.6849 -6.1381 17 1 9.3376 -2.4810 -5.1927 18 1 8.9241 -1.9929 -7.5318 19 1 8.7149 -0.2377 -5.8715 20 6 2.8005 -1.8907 -0.7371 21 6 3.2720 -1.5328 0.6981 22 6 2.0531 -0.7499 1.2343 23 6 1.0003 -1.7133 1.7675 24 6 1.5437 -2.4136 3.0175 25 8 1.9276 -1.4302 3.9809 26 6 2.9692 -0.5549 3.5431 27 6 2.4898 0.2292 2.3167 28 1 -0.3633 -1.0276 -0.0064 29 1 -0.3634 0.5082 0.8932 30 1 -0.3633 0.5195 -0.8868 31 1 0.6979 -1.1912 -4.7523 32 1 1.7331 0.0689 -5.0787 33 1 3.9581 0.2023 -4.1059 34 1 4.3972 -0.9548 -2.8267 35 1 4.4013 -2.7931 -4.4908 36 1 3.9623 -1.6360 -5.7701 37 1 6.7156 -3.5884 -7.2429 38 1 2.1645 -2.7757 -0.7201 39 1 3.6594 -2.0525 -1.3885 40 1 4.1617 -0.9034 0.6754 41 1 3.4478 -2.4334 1.2866 42 1 0.0969 -1.1599 2.0239 43 1 0.7683 -2.4572 1.0053 44 1 2.4105 -3.0173 2.7486 45 1 0.7708 -3.0550 3.4407 46 1 3.8497 -1.1406 3.2790 47 1 3.2213 0.1404 4.3437 48 1 3.3034 0.8491 1.9402 49 1 1.6477 0.8626 2.5959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424179266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:52 Heat of formation + Delta-G solvation = -118.635716 kcal Electronic energy + Delta-G solvation = -27418.476986 eV Core-core repulsion = 23764.590108 eV Total energy + Delta-G solvation = -3653.886878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.15440 -40.46087 -38.28436 -36.84224 -34.86369 -34.44759 -32.57743 -32.12122 -31.95791 -29.87342 -28.03300 -26.46165 -25.53923 -24.54288 -23.97468 -23.20585 -21.89699 -20.01492 -19.53435 -18.52002 -18.16355 -17.54708 -17.17959 -16.88572 -16.73791 -16.48312 -16.13793 -15.71713 -15.58830 -15.36694 -15.16205 -14.46502 -14.36434 -14.21295 -14.11526 -13.95007 -13.76548 -13.45312 -13.19580 -13.05844 -12.88417 -12.79030 -12.54439 -12.47532 -12.29148 -12.16886 -11.97813 -11.82556 -11.65953 -11.62134 -11.33725 -11.24146 -11.12341 -10.95586 -10.49313 -10.37567 -9.73232 -9.64547 -8.14050 -6.24478 1.41355 1.43122 1.47604 1.53898 1.91835 2.44379 3.01759 3.19008 3.21943 3.44491 3.53977 3.58358 3.73806 4.04147 4.05843 4.07995 4.13694 4.18765 4.26007 4.27556 4.28457 4.45851 4.55412 4.56327 4.56974 4.65017 4.75657 4.78645 4.83073 4.85863 4.92492 4.96380 5.02773 5.04979 5.14384 5.16453 5.22207 5.29260 5.37231 5.41662 5.56113 5.82401 5.97162 6.06258 6.29456 6.32466 6.42192 6.47419 6.93487 7.04312 7.43719 8.97151 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.003406 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.991566 B = 8219.886529 C = 9253.414388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 H 0.058 0.942 4 N -0.608 5.608 5 C 0.501 3.499 6 O -0.582 6.582 7 C 0.091 3.909 8 H 0.105 0.895 9 N -0.818 5.818 10 C -0.079 4.079 11 C 0.042 3.958 12 C -0.544 4.544 13 H 0.054 0.946 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.959 3.041 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.268 1.268 20 C 0.086 3.914 21 C -0.121 4.121 22 C -0.057 4.057 23 C -0.138 4.138 24 C 0.058 3.942 25 O -0.401 6.401 26 C 0.062 3.938 27 C -0.137 4.137 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.346 0.654 32 H 0.345 0.655 33 H 0.039 0.961 34 H 0.065 0.935 35 H -0.005 1.005 36 H 0.004 0.996 37 H 0.262 0.738 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.104 0.896 48 H 0.078 0.922 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 1.463 22.745 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.076 0.924 4 N -0.341 5.341 5 C 0.288 3.712 6 O -0.462 6.462 7 C -0.025 4.025 8 H 0.122 0.878 9 N -0.346 5.346 10 C -0.117 4.117 11 C 0.005 3.995 12 C -0.582 4.582 13 H 0.073 0.927 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.784 3.216 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.192 1.192 20 C -0.036 4.036 21 C -0.159 4.159 22 C -0.058 4.058 23 C -0.175 4.175 24 C -0.018 4.018 25 O -0.321 6.321 26 C -0.015 4.015 27 C -0.175 4.175 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.013 0.987 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.123 0.877 46 H 0.079 0.921 47 H 0.122 0.878 48 H 0.097 0.903 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.736 1.376 22.220 24.298 hybrid contribution 0.332 0.903 -0.485 1.077 sum -9.404 2.279 21.734 23.791 Atomic orbital electron populations 1.22122 0.94539 1.02577 1.01917 1.21595 0.94840 0.95613 0.84334 0.92400 1.48791 1.52441 1.28316 1.04542 1.22089 0.79531 0.85526 0.84016 1.90621 1.42670 1.28919 1.84000 1.21576 0.95344 0.99318 0.86279 0.87762 1.59002 1.18203 1.26607 1.30820 1.21375 0.91039 0.99351 0.99984 1.18796 0.93554 0.93241 0.93879 1.21697 0.96825 1.17217 1.22430 0.92748 1.25880 1.03118 0.94987 0.95450 1.70102 1.37843 1.22712 1.26236 0.85546 0.79851 0.78799 0.77425 1.19474 1.20967 1.19229 1.22734 0.95975 0.88098 0.96767 1.22977 0.97254 1.01755 0.93918 1.21011 0.95927 0.95834 0.93038 1.22162 0.98250 0.98838 0.98276 1.22792 1.00239 0.90149 0.88667 1.87902 1.56232 1.46544 1.41375 1.22688 0.89648 0.92622 0.96493 1.22068 1.02282 0.97840 0.95315 0.91326 0.90205 0.94363 0.84102 0.84170 0.94252 0.91624 0.98675 0.97717 0.92901 0.89492 0.90465 0.90224 0.87457 0.90400 0.90118 0.91916 0.87738 0.92073 0.87802 0.90295 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 7.97 71.98 0.57 -2.63 16 2 C 0.14 3.02 2.98 45.06 0.13 3.16 16 3 H 0.06 1.45 7.81 -2.38 -0.02 1.44 16 4 N -0.61 -15.56 3.07 -788.15 -2.42 -17.97 16 5 C 0.50 16.29 6.89 87.66 0.60 16.90 16 6 O -0.58 -22.13 15.33 -3.05 -0.05 -22.18 16 7 C 0.09 3.12 2.43 44.17 0.11 3.23 16 8 H 0.10 3.39 7.67 -2.39 -0.02 3.37 16 9 N -0.82 -28.65 8.44 -171.80 -1.45 -30.10 16 10 C -0.08 -3.25 4.64 30.59 0.14 -3.11 16 11 C 0.04 2.21 4.86 29.84 0.15 2.36 16 12 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 13 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 14 C 0.00 0.21 5.46 84.66 0.46 0.67 16 15 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 16 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 C 0.09 1.75 6.08 86.96 0.53 2.28 16 21 C -0.12 -1.84 5.10 31.87 0.16 -1.68 16 22 C -0.06 -0.87 0.47 -51.91 -0.02 -0.89 16 23 C -0.14 -1.76 3.62 30.46 0.11 -1.65 16 24 C 0.06 0.68 6.65 72.06 0.48 1.16 16 25 O -0.40 -6.27 10.75 -148.98 -1.60 -7.87 16 26 C 0.06 0.76 6.66 72.07 0.48 1.24 16 27 C -0.14 -1.86 4.77 30.46 0.15 -1.71 16 28 H 0.07 1.29 6.61 -2.39 -0.02 1.28 16 29 H 0.08 1.36 7.67 -2.38 -0.02 1.34 16 30 H 0.04 1.03 6.92 -2.39 -0.02 1.01 16 31 H 0.35 10.46 9.06 -89.69 -0.81 9.64 16 32 H 0.34 12.40 8.58 -89.70 -0.77 11.63 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.50 6.61 -2.39 -0.02 2.49 16 35 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.00 0.25 7.75 -2.38 -0.02 0.24 16 37 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.09 1.48 7.68 -2.39 -0.02 1.46 16 39 H 0.08 1.83 6.07 -2.39 -0.01 1.82 16 40 H 0.08 1.28 7.95 -2.39 -0.02 1.26 16 41 H 0.11 1.20 6.30 -2.38 -0.02 1.18 16 42 H 0.08 1.05 6.56 -2.39 -0.02 1.03 16 43 H 0.08 1.00 6.96 -2.39 -0.02 0.98 16 44 H 0.06 0.62 6.54 -2.39 -0.02 0.61 16 45 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 0.66 7.59 -2.39 -0.02 0.64 16 47 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.08 1.06 8.05 -2.39 -0.02 1.04 16 49 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -70.22 368.57 0.45 -69.77 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -0.63 Total: 29.49 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 4.28 Total: -11.25 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -3.58 Total: -104.13 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.65 Total: -30.05 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -70.22 0.45 -69.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424179266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.868 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds