Wall clock time and date at job start Tue Mar 31 2020 11:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47066 * 2 1 4 4 C 1.50695 * 109.47093 * 119.99832 * 2 1 3 5 5 O 1.21286 * 120.00011 * 119.99552 * 4 2 1 6 6 N 1.34774 * 120.00547 * 300.00084 * 4 2 1 7 7 C 1.46494 * 120.00687 * 179.97438 * 6 4 2 8 8 H 1.09008 * 112.84895 * 23.80612 * 7 6 4 9 9 C 1.53787 * 113.61603 * 154.99606 * 7 6 4 10 10 C 1.53781 * 87.07813 * 89.12161 * 9 7 6 11 11 H 1.09001 * 113.61418 * 270.80223 * 10 9 7 12 12 N 1.46499 * 113.61562 * 139.98287 * 10 9 7 13 13 C 1.36935 * 119.99938 * 156.52648 * 12 10 9 14 14 H 1.08000 * 120.00518 * 359.72965 * 13 12 10 15 15 C 1.38817 * 119.99990 * 179.97438 * 13 12 10 16 16 N 1.31617 * 119.99869 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47028 * 60.00888 * 17 15 13 19 19 H 1.48503 * 109.46851 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47412 * 300.00497 * 17 15 13 21 21 C 1.53783 * 87.17424 * 25.38836 * 10 9 7 22 22 C 1.53001 * 109.46937 * 239.99679 * 2 1 3 23 23 H 1.09000 * 109.47954 * 180.02562 * 22 2 1 24 24 C 1.53095 * 109.47915 * 60.00215 * 22 2 1 25 25 C 1.53174 * 109.16229 * 182.40553 * 24 22 2 26 26 C 1.53173 * 109.03750 * 56.98042 * 25 24 22 27 27 C 1.53095 * 109.16370 * 303.01767 * 26 25 24 28 28 O 1.42894 * 109.48267 * 300.05933 * 22 2 1 29 29 H 1.08998 * 109.46960 * 300.00392 * 1 2 3 30 30 H 1.09002 * 109.47117 * 60.00333 * 1 2 3 31 31 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47147 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47374 * 299.99945 * 3 2 1 34 34 H 1.08998 * 109.47551 * 59.99970 * 3 2 1 35 35 H 0.97011 * 119.99419 * 359.97438 * 6 4 2 36 36 H 1.08999 * 113.61566 * 334.57672 * 9 7 6 37 37 H 1.08991 * 113.69117 * 203.67460 * 9 7 6 38 38 H 0.96999 * 119.99984 * 336.52584 * 12 10 9 39 39 H 0.96996 * 119.99743 * 179.97438 * 16 15 13 40 40 H 1.09003 * 113.61223 * 89.16253 * 21 10 9 41 41 H 1.09001 * 113.61825 * 220.06160 * 21 10 9 42 42 H 1.08991 * 109.52355 * 302.31197 * 24 22 2 43 43 H 1.09001 * 109.52441 * 62.50236 * 24 22 2 44 44 H 1.09005 * 109.54458 * 176.84701 * 25 24 22 45 45 H 1.09006 * 109.54868 * 297.11265 * 25 24 22 46 46 H 1.08999 * 109.52298 * 62.92224 * 26 25 24 47 47 H 1.08999 * 109.52395 * 183.11389 * 26 25 24 48 48 H 1.09000 * 109.48094 * 177.58938 * 27 26 25 49 49 H 1.08999 * 109.48416 * 297.61360 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.7295 -1.6965 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 2.1946 -0.9408 3.6507 8 1 3.0998 -1.5193 3.4658 9 6 2.2844 -0.0361 4.8911 10 6 0.8293 -0.4343 5.1897 11 1 0.0930 0.2190 4.7215 12 7 0.5637 -0.6637 6.6120 13 6 -0.7114 -0.5484 7.0976 14 1 -1.5206 -0.2840 6.4330 15 6 -0.9632 -0.7662 8.4453 16 7 0.0237 -1.0831 9.2563 17 14 -2.7026 -0.6082 9.1079 18 1 -3.5861 -1.5809 8.4162 19 1 -2.7040 -0.8878 10.5664 20 1 -3.2004 0.7701 8.8681 21 6 1.1000 -1.7244 4.3976 22 6 2.0400 -0.7213 -1.2492 23 1 3.1299 -0.7218 -1.2492 24 6 1.5298 0.0002 -2.4994 25 6 1.9941 -0.7618 -3.7444 26 6 1.4926 -2.2067 -3.6618 27 6 2.0042 -2.8430 -2.3667 28 8 1.5626 -2.0682 -1.2501 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.1493 0.5390 2.5435 36 1 2.4079 1.0203 4.6530 37 1 2.9953 -0.3875 5.6388 38 1 1.2911 -0.8973 7.2097 39 1 -0.1522 -1.2350 10.1980 40 1 1.4867 -2.5394 5.0095 41 1 0.2687 -2.0289 3.7617 42 1 0.4406 0.0368 -2.4799 43 1 1.9288 1.0142 -2.5231 44 1 1.5875 -0.2852 -4.6364 45 1 3.0832 -0.7559 -3.7905 46 1 0.4026 -2.2148 -3.6657 47 1 1.8650 -2.7710 -4.5167 48 1 1.6151 -3.8577 -2.2818 49 1 3.0937 -2.8716 -2.3814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020163266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:58 Heat of formation + Delta-G solvation = -66.390990 kcal Electronic energy + Delta-G solvation = -26824.661720 eV Core-core repulsion = 23173.040343 eV Total energy + Delta-G solvation = -3651.621377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.71209 -39.27258 -37.83153 -35.45507 -33.94911 -33.77183 -32.41745 -30.22308 -29.60769 -27.62272 -25.23760 -25.08001 -24.93065 -24.30060 -22.80929 -21.80926 -20.50028 -19.27033 -18.89195 -17.19594 -16.78727 -16.44229 -16.25731 -15.69896 -15.04357 -14.83532 -14.73041 -14.60904 -14.46208 -13.87980 -13.80749 -13.57066 -13.17145 -12.93803 -12.79293 -12.61101 -12.45287 -12.25638 -11.98140 -11.87661 -11.79945 -11.60435 -11.42040 -11.29032 -11.18992 -10.87265 -10.79644 -10.73568 -10.42461 -10.26527 -10.22276 -9.87472 -9.59617 -9.52422 -9.36016 -8.87728 -8.65937 -6.96037 -5.78159 -3.06951 2.82749 3.27945 3.43360 3.47897 3.48883 3.59506 4.33803 4.45897 4.55334 4.59073 4.63772 4.72486 4.82110 4.85176 5.01555 5.05556 5.12533 5.27305 5.29032 5.32766 5.34864 5.44312 5.48535 5.53432 5.55183 5.57088 5.61447 5.65683 5.66808 5.73824 5.83806 5.88801 5.90659 5.98288 6.00561 6.15109 6.22145 6.28681 6.37386 6.59792 6.70098 6.76511 7.14576 7.18818 7.68388 7.73306 8.40363 8.45216 9.51425 10.09336 10.43785 11.44201 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.002616 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.427276 B =10701.165747 C =10838.330285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.074 4.074 3 C -0.143 4.143 4 C 0.525 3.475 5 O -0.529 6.529 6 N -0.707 5.707 7 C 0.117 3.883 8 H 0.094 0.906 9 C -0.159 4.159 10 C 0.167 3.833 11 H 0.072 0.928 12 N -0.713 5.713 13 C -0.244 4.244 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.933 5.933 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.175 4.175 22 C 0.118 3.882 23 H 0.061 0.939 24 C -0.155 4.155 25 C -0.121 4.121 26 C -0.157 4.157 27 C 0.063 3.937 28 O -0.359 6.359 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.398 0.602 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.091 0.909 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 4.364 -26.857 27.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 C -0.201 4.201 4 C 0.311 3.689 5 O -0.404 6.404 6 N -0.358 5.358 7 C 0.012 3.988 8 H 0.112 0.888 9 C -0.199 4.199 10 C 0.055 3.945 11 H 0.090 0.910 12 N -0.351 5.351 13 C -0.375 4.375 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.580 5.580 17 Si 0.738 3.262 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.218 4.218 22 C 0.059 3.941 23 H 0.079 0.921 24 C -0.193 4.193 25 C -0.159 4.159 26 C -0.195 4.195 27 C -0.014 4.014 28 O -0.278 6.278 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.109 0.891 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.146 3.601 -26.690 27.419 hybrid contribution -0.834 0.374 0.437 1.013 sum 4.312 3.975 -26.253 26.900 Atomic orbital electron populations 1.21862 0.91863 1.03583 1.02406 1.20824 0.98188 0.95921 0.92829 1.21922 1.01801 0.93059 1.03302 1.20248 0.80136 0.84391 0.84165 1.90693 1.37612 1.25586 1.86499 1.45698 1.53393 1.31585 1.05149 1.21815 0.98277 0.95341 0.83387 0.88817 1.23829 1.00849 0.98840 0.96337 1.21610 0.92727 0.93680 0.86489 0.91049 1.42393 1.07765 1.82126 1.02788 1.19244 0.86034 1.39976 0.92288 0.91199 1.24766 0.97473 1.02399 0.96251 1.69647 1.30234 1.54009 1.04152 0.86264 0.84241 0.77804 0.77855 1.21225 1.21678 1.21261 1.24313 0.97807 1.00605 0.99035 1.21715 0.97498 0.82701 0.92156 0.92120 1.22372 1.02437 0.99646 0.94805 1.21576 1.00882 0.95554 0.97890 1.22221 1.01929 0.96616 0.98743 1.22500 0.98513 0.95056 0.85322 1.88011 1.73272 1.21932 1.44568 0.91983 0.91435 0.91072 0.91869 0.91005 0.91245 0.76806 0.91858 0.89127 0.78033 0.93397 0.89731 0.92433 0.90498 0.90638 0.91569 0.91917 0.91119 0.91149 0.89082 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 7.88 37.16 0.29 -1.04 16 2 C -0.07 -0.77 0.48 -155.67 -0.07 -0.85 16 3 C -0.14 -1.10 8.02 37.15 0.30 -0.80 16 4 C 0.53 7.46 6.33 -10.99 -0.07 7.39 16 5 O -0.53 -9.60 14.89 -12.67 -0.19 -9.79 16 6 N -0.71 -9.50 5.05 -52.93 -0.27 -9.77 16 7 C 0.12 1.85 4.33 -67.03 -0.29 1.56 16 8 H 0.09 1.57 7.46 -51.92 -0.39 1.18 16 9 C -0.16 -2.56 7.58 -25.92 -0.20 -2.75 16 10 C 0.17 3.25 4.34 -67.12 -0.29 2.96 16 11 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 12 N -0.71 -17.78 5.41 -52.64 -0.28 -18.07 16 13 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 16 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 17 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 C -0.18 -3.21 7.69 -25.83 -0.20 -3.41 16 22 C 0.12 1.25 1.45 -26.68 -0.04 1.21 16 23 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 24 C -0.16 -1.19 4.70 -26.59 -0.12 -1.31 16 25 C -0.12 -0.85 6.03 -26.55 -0.16 -1.01 16 26 C -0.16 -1.18 6.14 -26.59 -0.16 -1.35 16 27 C 0.06 0.62 6.84 37.21 0.25 0.88 16 28 O -0.36 -4.62 8.63 -53.45 -0.46 -5.08 16 29 H 0.06 0.55 7.56 -51.93 -0.39 0.15 16 30 H 0.07 0.51 6.38 -51.93 -0.33 0.18 16 31 H 0.07 0.82 7.68 -51.93 -0.40 0.43 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.42 6.49 -51.93 -0.34 0.08 16 34 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 35 H 0.40 4.49 7.54 -40.82 -0.31 4.18 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.50 8.11 -51.93 -0.42 1.08 16 38 H 0.39 10.21 7.91 -40.82 -0.32 9.89 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 0.59 6.31 -51.93 -0.33 0.26 16 43 H 0.08 0.47 6.57 -51.93 -0.34 0.13 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -32.97 378.52 -9.38 -42.35 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -8.58 Total: 10.65 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.01 Total: -5.89 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.17 Total: -55.26 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.65 Total: -14.87 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.97 -9.38 -42.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020163266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.041 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds