Wall clock time and date at job start Tue Mar 31 2020 11:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47066 * 2 1 4 4 C 1.50695 * 109.47093 * 119.99832 * 2 1 3 5 5 O 1.21286 * 120.00011 * 119.99552 * 4 2 1 6 6 N 1.34774 * 120.00547 * 300.00084 * 4 2 1 7 7 C 1.46494 * 120.00687 * 179.97438 * 6 4 2 8 8 H 1.09008 * 112.84895 * 23.80612 * 7 6 4 9 9 C 1.53787 * 113.61603 * 154.99606 * 7 6 4 10 10 C 1.53781 * 87.07813 * 89.12161 * 9 7 6 11 11 H 1.09001 * 113.61418 * 270.80223 * 10 9 7 12 12 N 1.46499 * 113.61562 * 139.98287 * 10 9 7 13 13 C 1.36935 * 119.99938 * 156.52648 * 12 10 9 14 14 H 1.08000 * 120.00518 * 359.72965 * 13 12 10 15 15 C 1.38817 * 119.99990 * 179.97438 * 13 12 10 16 16 N 1.31617 * 119.99869 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47028 * 60.00888 * 17 15 13 19 19 H 1.48503 * 109.46851 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47412 * 300.00497 * 17 15 13 21 21 C 1.53783 * 87.17424 * 25.38836 * 10 9 7 22 22 C 1.53001 * 109.46937 * 239.99679 * 2 1 3 23 23 H 1.09000 * 109.47954 * 180.02562 * 22 2 1 24 24 C 1.53095 * 109.47915 * 60.00215 * 22 2 1 25 25 C 1.53174 * 109.16229 * 182.40553 * 24 22 2 26 26 C 1.53173 * 109.03750 * 56.98042 * 25 24 22 27 27 C 1.53095 * 109.16370 * 303.01767 * 26 25 24 28 28 O 1.42894 * 109.48267 * 300.05933 * 22 2 1 29 29 H 1.08998 * 109.46960 * 300.00392 * 1 2 3 30 30 H 1.09002 * 109.47117 * 60.00333 * 1 2 3 31 31 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47147 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47374 * 299.99945 * 3 2 1 34 34 H 1.08998 * 109.47551 * 59.99970 * 3 2 1 35 35 H 0.97011 * 119.99419 * 359.97438 * 6 4 2 36 36 H 1.08999 * 113.61566 * 334.57672 * 9 7 6 37 37 H 1.08991 * 113.69117 * 203.67460 * 9 7 6 38 38 H 0.96999 * 119.99984 * 336.52584 * 12 10 9 39 39 H 0.96996 * 119.99743 * 179.97438 * 16 15 13 40 40 H 1.09003 * 113.61223 * 89.16253 * 21 10 9 41 41 H 1.09001 * 113.61825 * 220.06160 * 21 10 9 42 42 H 1.08991 * 109.52355 * 302.31197 * 24 22 2 43 43 H 1.09001 * 109.52441 * 62.50236 * 24 22 2 44 44 H 1.09005 * 109.54458 * 176.84701 * 25 24 22 45 45 H 1.09006 * 109.54868 * 297.11265 * 25 24 22 46 46 H 1.08999 * 109.52298 * 62.92224 * 26 25 24 47 47 H 1.08999 * 109.52395 * 183.11389 * 26 25 24 48 48 H 1.09000 * 109.48094 * 177.58938 * 27 26 25 49 49 H 1.08999 * 109.48416 * 297.61360 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.7295 -1.6965 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 2.1946 -0.9408 3.6507 8 1 3.0998 -1.5193 3.4658 9 6 2.2844 -0.0361 4.8911 10 6 0.8293 -0.4343 5.1897 11 1 0.0930 0.2190 4.7215 12 7 0.5637 -0.6637 6.6120 13 6 -0.7114 -0.5484 7.0976 14 1 -1.5206 -0.2840 6.4330 15 6 -0.9632 -0.7662 8.4453 16 7 0.0237 -1.0831 9.2563 17 14 -2.7026 -0.6082 9.1079 18 1 -3.5861 -1.5809 8.4162 19 1 -2.7040 -0.8878 10.5664 20 1 -3.2004 0.7701 8.8681 21 6 1.1000 -1.7244 4.3976 22 6 2.0400 -0.7213 -1.2492 23 1 3.1299 -0.7218 -1.2492 24 6 1.5298 0.0002 -2.4994 25 6 1.9941 -0.7618 -3.7444 26 6 1.4926 -2.2067 -3.6618 27 6 2.0042 -2.8430 -2.3667 28 8 1.5626 -2.0682 -1.2501 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.1493 0.5390 2.5435 36 1 2.4079 1.0203 4.6530 37 1 2.9953 -0.3875 5.6388 38 1 1.2911 -0.8973 7.2097 39 1 -0.1522 -1.2350 10.1980 40 1 1.4867 -2.5394 5.0095 41 1 0.2687 -2.0289 3.7617 42 1 0.4406 0.0368 -2.4799 43 1 1.9288 1.0142 -2.5231 44 1 1.5875 -0.2852 -4.6364 45 1 3.0832 -0.7559 -3.7905 46 1 0.4026 -2.2148 -3.6657 47 1 1.8650 -2.7710 -4.5167 48 1 1.6151 -3.8577 -2.2818 49 1 3.0937 -2.8716 -2.3814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020163266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:57 Heat of formation + Delta-G solvation = -87.488774 kcal Electronic energy + Delta-G solvation = -26825.576589 eV Core-core repulsion = 23173.040343 eV Total energy + Delta-G solvation = -3652.536246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.71340 -40.37176 -39.09832 -36.36549 -35.73886 -34.45785 -33.91546 -31.81189 -30.66370 -28.29583 -26.62991 -26.46814 -25.94026 -25.35313 -24.14660 -23.08620 -21.27954 -20.37740 -20.17648 -19.13725 -17.86663 -17.42475 -17.12635 -16.88036 -16.50242 -16.01120 -15.80161 -15.58469 -15.43241 -15.35308 -15.15444 -14.59628 -14.30495 -13.83113 -13.79497 -13.54241 -13.43127 -13.33189 -13.26157 -13.19973 -12.95434 -12.77006 -12.59535 -12.53325 -12.20986 -12.12646 -11.98791 -11.84754 -11.80577 -11.72300 -11.43598 -11.21097 -11.13078 -10.83339 -10.63704 -10.22799 -9.96036 -8.98694 -7.94164 -5.22790 1.47933 1.50884 1.56831 1.71212 2.17681 2.57136 2.83706 3.37082 3.61247 3.62267 3.71653 3.83810 3.94769 3.96198 3.99604 4.05593 4.10083 4.16938 4.29993 4.32669 4.33042 4.36657 4.62555 4.67679 4.71637 4.75780 4.80327 4.88727 4.90456 4.92427 4.94978 4.97599 5.01543 5.09325 5.11796 5.13470 5.20337 5.21761 5.27806 5.31824 5.35682 5.47044 5.51202 5.74009 6.27646 6.40833 6.63907 7.33715 7.34298 8.10316 8.33085 9.28977 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.002616 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.427276 B =10701.165747 C =10838.330285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C -0.141 4.141 4 C 0.520 3.480 5 O -0.574 6.574 6 N -0.698 5.698 7 C 0.135 3.865 8 H 0.084 0.916 9 C -0.140 4.140 10 C 0.156 3.844 11 H 0.083 0.917 12 N -0.727 5.727 13 C -0.245 4.245 14 H 0.078 0.922 15 C -0.077 4.077 16 N -0.970 5.970 17 Si 0.973 3.027 18 H -0.280 1.280 19 H -0.297 1.297 20 H -0.274 1.274 21 C -0.174 4.174 22 C 0.113 3.887 23 H 0.042 0.958 24 C -0.148 4.148 25 C -0.122 4.122 26 C -0.151 4.151 27 C 0.055 3.945 28 O -0.391 6.391 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.411 0.589 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 6.614 -29.163 30.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 C -0.198 4.198 4 C 0.307 3.693 5 O -0.452 6.452 6 N -0.350 5.350 7 C 0.028 3.972 8 H 0.102 0.898 9 C -0.179 4.179 10 C 0.046 3.954 11 H 0.101 0.899 12 N -0.365 5.365 13 C -0.376 4.376 14 H 0.096 0.904 15 C -0.269 4.269 16 N -0.621 5.621 17 Si 0.802 3.198 18 H -0.207 1.207 19 H -0.224 1.224 20 H -0.200 1.200 21 C -0.216 4.216 22 C 0.055 3.945 23 H 0.060 0.940 24 C -0.186 4.186 25 C -0.160 4.160 26 C -0.189 4.189 27 C -0.022 4.022 28 O -0.311 6.311 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.248 0.752 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.206 0.794 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.104 0.896 48 H 0.107 0.893 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.144 5.890 -29.061 29.940 hybrid contribution -0.482 -0.394 1.078 1.245 sum 3.663 5.496 -27.983 28.752 Atomic orbital electron populations 1.21863 0.90956 1.02397 1.04156 1.20893 0.98717 0.97098 0.90494 1.21970 1.01628 0.91025 1.05197 1.21076 0.79120 0.83868 0.85215 1.90674 1.39682 1.27706 1.87161 1.45603 1.53303 1.31709 1.04338 1.21487 0.96813 0.94752 0.84126 0.89761 1.23633 0.98016 1.00398 0.95892 1.21924 0.95143 0.94435 0.83875 0.89927 1.42589 1.06642 1.82475 1.04757 1.19669 0.87308 1.38146 0.92515 0.90395 1.25586 1.01233 1.03307 0.96801 1.69809 1.32213 1.56050 1.04015 0.85222 0.79832 0.78200 0.76581 1.20663 1.22365 1.20013 1.24183 0.98581 0.99834 0.99016 1.21849 0.96576 0.82327 0.93784 0.93965 1.22347 1.02629 1.00288 0.93309 1.21615 1.00990 0.95019 0.98340 1.22167 1.01772 0.97266 0.97654 1.22638 0.98226 0.95195 0.86101 1.87964 1.73695 1.23335 1.46074 0.91079 0.88856 0.93694 0.92256 0.88353 0.90163 0.75173 0.89255 0.89618 0.79415 0.94051 0.91552 0.93031 0.90046 0.88554 0.89638 0.91951 0.91213 0.89619 0.89266 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 7.88 71.98 0.57 -1.74 16 2 C -0.07 -1.31 0.48 -52.93 -0.03 -1.34 16 3 C -0.14 -1.72 8.02 71.98 0.58 -1.14 16 4 C 0.52 14.47 6.33 87.66 0.56 15.03 16 5 O -0.57 -21.30 14.89 14.37 0.21 -21.09 16 6 N -0.70 -17.81 5.05 -439.77 -2.22 -20.03 16 7 C 0.13 4.16 4.33 45.58 0.20 4.36 16 8 H 0.08 2.84 7.46 -2.38 -0.02 2.82 16 9 C -0.14 -4.32 7.58 31.12 0.24 -4.09 16 10 C 0.16 5.96 4.34 45.52 0.20 6.15 16 11 H 0.08 2.97 8.11 -2.39 -0.02 2.95 16 12 N -0.73 -36.43 5.41 -320.44 -1.73 -38.16 16 13 C -0.24 -13.48 9.97 84.04 0.84 -12.64 16 14 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 15 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 16 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 17 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 19 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 C -0.17 -6.42 7.69 31.18 0.24 -6.18 16 22 C 0.11 2.29 1.45 30.63 0.04 2.33 16 23 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 24 C -0.15 -1.87 4.70 30.68 0.14 -1.72 16 25 C -0.12 -1.41 6.03 30.71 0.19 -1.22 16 26 C -0.15 -2.05 6.14 30.68 0.19 -1.86 16 27 C 0.06 1.10 6.84 72.01 0.49 1.59 16 28 O -0.39 -10.18 8.63 -131.56 -1.14 -11.31 16 29 H 0.07 1.05 7.56 -2.39 -0.02 1.04 16 30 H 0.09 1.10 6.38 -2.39 -0.02 1.08 16 31 H 0.04 1.00 7.68 -2.39 -0.02 0.99 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.71 6.49 -2.38 -0.02 0.69 16 34 H 0.08 0.82 7.56 -2.39 -0.02 0.80 16 35 H 0.41 8.25 7.54 -92.70 -0.70 7.55 16 36 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.09 2.78 8.11 -2.39 -0.02 2.77 16 38 H 0.37 20.20 7.91 -92.71 -0.73 19.47 16 39 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 40 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.08 0.97 6.31 -2.39 -0.02 0.96 16 43 H 0.10 0.81 6.57 -2.39 -0.02 0.80 16 44 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -72.94 378.52 1.85 -71.09 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.49 Total: 37.22 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 4.90 Total: -6.43 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -3.67 Total: -117.51 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.92 Total: -32.40 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -72.94 1.85 -71.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020163266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.402 kcal (2) G-P(sol) polarization free energy of solvation -72.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds