Wall clock time and date at job start Tue Mar 31 2020 09:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.62500 * 2 1 4 4 C 1.50468 * 109.62753 * 120.39209 * 2 1 3 5 5 C 1.54069 * 112.49414 * 214.05561 * 4 2 1 6 6 C 1.54059 * 112.82041 * 318.28264 * 5 4 2 7 7 C 1.50476 * 112.49605 * 318.28500 * 6 5 4 8 8 H 1.08999 * 109.62530 * 334.24129 * 7 6 5 9 9 N 1.46506 * 109.62586 * 213.85679 * 7 6 5 10 10 C 1.34777 * 119.99877 * 84.99677 * 9 7 6 11 11 O 1.21351 * 119.99897 * 0.02562 * 10 9 7 12 12 C 1.49446 * 120.00260 * 179.97438 * 10 9 7 13 13 O 1.21351 * 119.99843 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00256 * 180.02562 * 12 10 9 15 15 C 1.46506 * 119.99873 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.47035 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.46969 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46861 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37884 * 120.00200 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99569 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00031 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47227 * 90.00066 * 22 20 18 24 24 H 1.48500 * 109.46628 * 209.99752 * 22 20 18 25 25 H 1.48493 * 109.47109 * 329.99411 * 22 20 18 26 26 C 1.54237 * 108.52403 * 94.14965 * 7 6 5 27 27 C 1.45544 * 112.40225 * 280.01488 * 26 7 6 28 28 H 1.09002 * 109.47342 * 299.60872 * 1 2 3 29 29 H 1.09006 * 109.47539 * 59.61303 * 1 2 3 30 30 H 1.09006 * 109.47256 * 179.60717 * 1 2 3 31 31 H 1.09000 * 108.88141 * 93.28362 * 4 2 1 32 32 H 1.09001 * 108.80153 * 334.77893 * 4 2 1 33 33 H 1.08998 * 108.81620 * 197.42146 * 5 4 2 34 34 H 1.09001 * 108.72574 * 79.08545 * 5 4 2 35 35 H 1.08999 * 108.88139 * 197.50419 * 6 5 4 36 36 H 1.09002 * 108.79853 * 79.00559 * 6 5 4 37 37 H 0.96999 * 120.00080 * 264.99565 * 9 7 6 38 38 H 0.96999 * 120.00047 * 359.97438 * 14 12 10 39 39 H 1.09004 * 109.47073 * 299.99562 * 15 14 12 40 40 H 1.09000 * 109.47212 * 59.99645 * 15 14 12 41 41 H 1.09004 * 109.46930 * 299.99770 * 16 15 14 42 42 H 1.09004 * 109.47059 * 59.99372 * 16 15 14 43 43 H 1.08992 * 109.47534 * 299.99582 * 17 16 15 44 44 H 1.08996 * 109.47134 * 60.00388 * 17 16 15 45 45 H 0.97002 * 119.99797 * 180.02562 * 21 20 18 46 46 H 1.08996 * 108.89602 * 40.76912 * 26 7 6 47 47 H 1.09003 * 108.89799 * 159.26338 * 26 7 6 48 48 H 1.08998 * 108.89695 * 301.18131 * 27 26 7 49 49 H 1.08999 * 108.89327 * 182.69460 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0354 -0.7170 1.2225 5 6 3.3442 -0.1099 1.7630 6 6 4.3377 0.2598 0.6451 7 6 4.4057 -0.7866 -0.4341 8 1 4.1209 -1.7552 -0.0232 9 7 5.7695 -0.8587 -0.9644 10 6 6.6929 -1.6225 -0.3476 11 8 6.3945 -2.2508 0.6468 12 6 8.0839 -1.6965 -0.8889 13 8 8.3821 -1.0686 -1.8836 14 7 9.0072 -2.4607 -0.2724 15 6 10.3709 -2.5328 -0.8027 16 6 11.2117 -3.4608 0.0765 17 6 12.6357 -3.5366 -0.4778 18 6 13.4639 -4.4501 0.3885 19 1 13.0191 -4.9285 1.2487 20 6 14.7898 -4.6745 0.0837 21 7 15.3314 -4.0916 -0.9634 22 14 15.8161 -5.8075 1.1572 23 1 15.7202 -7.1975 0.6434 24 1 17.2337 -5.3661 1.1289 25 1 15.3105 -5.7595 2.5526 26 6 3.4313 -0.3910 -1.5623 27 6 2.0522 -0.7363 -1.2506 28 1 -0.3634 0.5077 0.8935 29 1 -0.3634 0.5198 -0.8865 30 1 -0.3634 -1.0277 -0.0070 31 1 2.2096 -1.7632 0.9711 32 1 1.2742 -0.6638 2.0008 33 1 3.8174 -0.8310 2.4294 34 1 3.1046 0.7887 2.3316 35 1 5.3294 0.3821 1.0807 36 1 4.0295 1.2059 0.2000 37 1 6.0078 -0.3568 -1.7595 38 1 8.7689 -2.9623 0.5229 39 1 10.3448 -2.9214 -1.8208 40 1 10.8129 -1.5364 -0.8054 41 1 11.2378 -3.0718 1.0944 42 1 10.7697 -4.4572 0.0796 43 1 12.6093 -3.9258 -1.4955 44 1 13.0778 -2.5403 -0.4811 45 1 16.2641 -4.2498 -1.1781 46 1 3.4977 0.6847 -1.7250 47 1 3.7251 -0.9035 -2.4784 48 1 1.9872 -1.8109 -1.0804 49 1 1.4224 -0.4769 -2.1016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343327708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:07 Heat of formation + Delta-G solvation = -112.014059 kcal Electronic energy + Delta-G solvation = -25357.316173 eV Core-core repulsion = 21703.716432 eV Total energy + Delta-G solvation = -3653.599742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87506 -39.60832 -38.24186 -35.85398 -35.17683 -33.34266 -33.00333 -31.99516 -31.24257 -27.96965 -27.15448 -25.50578 -24.02991 -23.51032 -22.40647 -21.12751 -20.77461 -20.00501 -19.59169 -18.28370 -17.08657 -16.35500 -16.14885 -15.95415 -15.52325 -15.19557 -15.05705 -14.65824 -14.53793 -14.42526 -14.10290 -13.75723 -13.58715 -13.42913 -13.36279 -12.80621 -12.38941 -12.31205 -11.90009 -11.89005 -11.79548 -11.79300 -11.47569 -11.24241 -10.99616 -10.91480 -10.88267 -10.76049 -10.72872 -10.60595 -10.49620 -9.90343 -9.76570 -9.44016 -9.36166 -9.13203 -8.97508 -8.38082 -6.02872 -4.05841 1.43947 2.35562 3.24326 3.31023 3.37377 3.40526 3.66726 4.10299 4.14169 4.42258 4.44383 4.53490 4.63602 4.73116 4.75991 4.92696 4.92892 5.00025 5.19065 5.28213 5.33109 5.34250 5.44443 5.53678 5.59251 5.59656 5.61236 5.69154 5.75225 5.78432 5.78983 5.88957 5.89858 6.00893 6.07758 6.08043 6.15100 6.27644 6.54008 6.69799 6.94914 6.95633 7.42776 7.61547 7.73222 7.75288 7.95478 8.06404 8.36781 9.00613 9.58476 11.08364 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.038565 B = 0.001886 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.871382 B =14842.045671 C =15263.366314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.113 4.113 6 C -0.130 4.130 7 C 0.145 3.855 8 H 0.095 0.905 9 N -0.701 5.701 10 C 0.509 3.491 11 O -0.519 6.519 12 C 0.499 3.501 13 O -0.527 6.527 14 N -0.691 5.691 15 C 0.114 3.886 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.124 4.124 27 C -0.112 4.112 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.412 0.588 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.471 9.978 0.807 32.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.092 0.908 4 C -0.156 4.156 5 C -0.151 4.151 6 C -0.168 4.168 7 C 0.041 3.959 8 H 0.113 0.887 9 N -0.354 5.354 10 C 0.290 3.710 11 O -0.394 6.394 12 C 0.279 3.721 13 O -0.404 6.404 14 N -0.343 5.343 15 C -0.008 4.008 16 C -0.161 4.161 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.722 3.278 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.162 4.162 27 C -0.149 4.149 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.248 0.752 38 H 0.247 0.753 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -30.278 9.978 0.715 31.888 hybrid contribution 0.736 -0.588 0.523 1.078 sum -29.542 9.390 1.238 31.023 Atomic orbital electron populations 1.21886 0.95086 1.01786 1.01593 1.20949 0.95387 1.00056 0.94696 0.90797 1.21475 0.96752 1.00033 0.97353 1.21826 0.94790 1.01025 0.97442 1.21779 1.00190 0.98547 0.96289 1.20837 0.80064 1.00892 0.94059 0.88724 1.45914 1.10409 1.47682 1.31431 1.20334 0.86559 0.79973 0.84154 1.90756 1.80707 1.43363 1.24610 1.20054 0.86107 0.81283 0.84684 1.90757 1.80789 1.43905 1.24965 1.46074 1.11460 1.46048 1.30733 1.21845 0.78669 1.01543 0.98791 1.21928 0.98381 0.97367 0.98391 1.19033 0.88197 0.97559 0.96572 1.21206 0.95297 1.27811 1.11813 0.92567 1.25029 0.98001 0.96109 0.95319 1.69966 1.13310 1.43376 1.26618 0.86568 0.79488 0.80934 0.80855 1.20651 1.21207 1.19878 1.20744 0.95068 1.02373 0.98043 1.20480 0.95423 1.00854 0.98190 0.92685 0.92764 0.92683 0.91930 0.91985 0.91690 0.92069 0.91505 0.91664 0.75221 0.75323 0.91098 0.91111 0.92432 0.92434 0.96185 0.96183 0.92930 0.91212 0.91106 0.91767 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 8.88 37.16 0.33 -0.36 16 2 C -0.09 -0.49 2.39 -91.24 -0.22 -0.71 16 3 H 0.07 0.41 6.97 -51.93 -0.36 0.04 16 4 C -0.12 -0.73 4.89 -27.44 -0.13 -0.87 16 5 C -0.11 -0.81 5.85 -25.62 -0.15 -0.96 16 6 C -0.13 -1.02 5.03 -27.44 -0.14 -1.16 16 7 C 0.15 1.20 2.12 -68.54 -0.15 1.06 16 8 H 0.09 0.92 6.45 -51.93 -0.33 0.59 16 9 N -0.70 -7.03 4.97 -54.83 -0.27 -7.30 16 10 C 0.51 6.65 7.70 -11.59 -0.09 6.56 16 11 O -0.52 -7.69 16.15 5.50 0.09 -7.60 16 12 C 0.50 7.47 7.89 -11.59 -0.09 7.38 16 13 O -0.53 -8.95 16.48 5.50 0.09 -8.86 16 14 N -0.69 -10.43 5.55 -60.72 -0.34 -10.77 16 15 C 0.11 1.96 5.67 -4.04 -0.02 1.94 16 16 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 17 C 0.02 0.60 4.97 -27.89 -0.14 0.47 16 18 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 19 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 22 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 26 C -0.12 -0.75 4.76 -29.60 -0.14 -0.89 16 27 C -0.11 -0.60 4.69 -29.60 -0.14 -0.74 16 28 H 0.05 0.25 8.09 -51.93 -0.42 -0.17 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.43 6.64 -51.93 -0.34 0.08 16 32 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.66 7.79 -51.93 -0.40 0.25 16 36 H 0.06 0.44 6.63 -51.93 -0.34 0.09 16 37 H 0.41 3.69 8.08 -40.82 -0.33 3.36 16 38 H 0.41 5.67 7.94 -40.82 -0.32 5.35 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.07 0.37 7.47 -51.93 -0.39 -0.02 16 47 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 48 H 0.06 0.37 7.47 -51.93 -0.39 -0.01 16 49 H 0.07 0.32 7.98 -51.93 -0.41 -0.10 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -31.40 386.76 -9.16 -40.56 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.64 Total: 1.77 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.63 Total: -4.20 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.13 Total: -44.00 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.18 Total: -16.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.40 -9.16 -40.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343327708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.454 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds