Wall clock time and date at job start Tue Mar 31 2020 10:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47969 * 2 1 4 4 C 1.53088 * 109.48344 * 239.96523 * 2 1 3 5 5 C 1.53169 * 109.16679 * 182.40650 * 4 2 1 6 6 H 1.09001 * 109.61810 * 176.88938 * 5 4 2 7 7 C 1.50699 * 109.54653 * 297.11125 * 5 4 2 8 8 O 1.21279 * 119.99810 * 359.55765 * 7 5 4 9 9 N 1.34774 * 120.00385 * 179.55363 * 7 5 4 10 10 C 1.46498 * 120.00394 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47518 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.49579 * 54.93301 * 11 10 9 13 13 C 1.53035 * 109.49623 * 175.00171 * 11 10 9 14 14 C 1.53048 * 109.53493 * 181.31934 * 13 11 10 15 15 C 1.53195 * 109.31089 * 298.63473 * 14 13 11 16 16 N 1.46920 * 108.77874 * 54.63298 * 15 14 13 17 17 C 1.36936 * 120.63054 * 126.36723 * 16 15 14 18 18 H 1.07998 * 120.00244 * 332.51082 * 17 16 15 19 19 C 1.38814 * 120.00017 * 152.50689 * 17 16 15 20 20 N 1.31618 * 119.99798 * 335.02747 * 19 17 16 21 21 Si 1.86804 * 119.99785 * 155.02721 * 19 17 16 22 22 H 1.48497 * 109.47193 * 90.00159 * 21 19 17 23 23 H 1.48503 * 109.47075 * 329.99960 * 21 19 17 24 24 H 1.48503 * 109.46931 * 209.99997 * 21 19 17 25 25 C 1.46929 * 118.73789 * 306.64787 * 16 15 14 26 26 C 1.53180 * 109.03434 * 56.98025 * 5 4 2 27 27 C 1.53084 * 109.16144 * 303.01626 * 26 5 4 28 28 O 1.42899 * 109.48214 * 120.02171 * 2 1 3 29 29 H 1.08997 * 109.47157 * 299.97787 * 1 2 3 30 30 H 1.08996 * 109.47055 * 59.97761 * 1 2 3 31 31 H 1.09004 * 109.47022 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.52242 * 62.49743 * 4 2 1 33 33 H 1.09004 * 109.52286 * 302.31643 * 4 2 1 34 34 H 0.96997 * 120.00036 * 0.02562 * 9 7 5 35 35 H 1.09002 * 109.46930 * 60.00042 * 10 9 7 36 36 H 1.09006 * 109.46958 * 300.00453 * 10 9 7 37 37 H 1.08998 * 109.46672 * 61.29849 * 13 11 10 38 38 H 1.08999 * 109.44905 * 301.32617 * 13 11 10 39 39 H 1.08999 * 109.49471 * 178.68673 * 14 13 11 40 40 H 1.08995 * 109.49947 * 58.58459 * 14 13 11 41 41 H 1.09011 * 109.58316 * 294.84413 * 15 14 13 42 42 H 1.08995 * 109.58664 * 174.42710 * 15 14 13 43 43 H 0.96992 * 120.00199 * 354.25811 * 20 19 17 44 44 H 1.09005 * 109.58534 * 173.14297 * 25 16 15 45 45 H 1.08999 * 109.58601 * 293.56296 * 25 16 15 46 46 H 1.09004 * 109.52210 * 62.92981 * 26 5 4 47 47 H 1.09007 * 109.52308 * 183.11087 * 26 5 4 48 48 H 1.09008 * 109.47993 * 177.59193 * 27 26 5 49 49 H 1.08995 * 109.48799 * 297.61640 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2494 5 6 3.5710 -0.7709 -1.2121 6 1 3.9405 -1.3320 -2.0705 7 6 4.1211 0.6315 -1.2519 8 8 3.3651 1.5779 -1.3131 9 7 5.4531 0.8342 -1.2195 10 6 5.9879 2.1975 -1.2576 11 6 7.5163 2.1475 -1.2098 12 1 7.8849 1.5127 -2.0155 13 6 8.0790 3.5610 -1.3750 14 6 9.6085 3.5080 -1.3602 15 6 10.0831 2.9528 -0.0135 16 7 9.4321 1.6566 0.2196 17 6 10.1764 0.5436 0.5064 18 1 11.1923 0.4662 0.1481 19 6 9.6253 -0.4853 1.2579 20 7 8.6368 -0.2357 2.0903 21 14 10.2866 -2.2240 1.0875 22 1 11.3856 -2.4335 2.0640 23 1 10.8036 -2.4243 -0.2901 24 1 9.1963 -3.1966 1.3533 25 6 7.9676 1.5759 0.1330 26 6 4.0176 -1.4600 0.0811 27 6 3.4307 -0.7090 1.2791 28 8 2.0066 -0.6740 1.1664 29 1 -0.3633 0.5135 0.8902 30 1 -0.3633 0.5142 -0.8897 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7148 -0.1845 -2.1399 33 1 1.6443 -1.7376 -1.2707 34 1 6.0578 0.0773 -1.1709 35 1 5.6153 2.7580 -0.4002 36 1 5.6693 2.6871 -2.1780 37 1 7.7295 4.1892 -0.5556 38 1 7.7393 3.9784 -2.3229 39 1 10.0086 4.5120 -1.5012 40 1 9.9578 2.8602 -2.1642 41 1 9.8129 3.6461 0.7831 42 1 11.1648 2.8202 -0.0338 43 1 8.3488 0.6781 2.2411 44 1 7.6538 0.5347 0.2094 45 1 7.5213 2.1543 0.9419 46 1 3.6613 -2.4902 0.0867 47 1 5.1059 -1.4497 0.1423 48 1 3.7100 -1.2199 2.2006 49 1 3.8194 0.3091 1.2958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345322708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:06 Heat of formation + Delta-G solvation = -88.790891 kcal Electronic energy + Delta-G solvation = -27726.175534 eV Core-core repulsion = 24073.582824 eV Total energy + Delta-G solvation = -3652.592710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.59243 -38.55849 -37.72517 -34.84997 -33.76527 -33.29407 -32.64169 -30.88512 -29.72786 -27.86500 -26.10976 -25.18094 -24.13062 -22.67432 -22.10127 -21.49495 -20.89422 -19.64795 -18.92580 -17.46031 -16.55929 -16.20913 -16.15629 -15.74175 -15.29550 -14.75903 -14.38115 -14.25799 -14.03511 -13.80075 -13.72172 -13.55210 -13.09721 -12.81800 -12.63388 -12.49729 -12.38414 -12.18491 -12.04437 -11.96785 -11.86149 -11.58201 -11.05704 -10.94460 -10.75199 -10.70194 -10.43898 -10.39143 -10.30286 -10.13555 -10.01401 -9.94297 -9.62161 -9.34454 -9.14152 -8.81148 -8.44538 -6.95008 -6.13784 -3.29869 2.75303 3.36682 3.44247 3.45841 3.61722 3.89084 4.51405 4.57208 4.72360 4.77196 4.95996 4.97955 5.11965 5.22086 5.31287 5.36107 5.39642 5.41067 5.48906 5.56943 5.59949 5.63402 5.64783 5.76579 5.81339 5.85042 5.88206 5.92762 6.02980 6.06858 6.11057 6.14477 6.18150 6.20571 6.28241 6.34291 6.43275 6.60977 6.64928 6.70054 6.80254 6.94679 7.09540 7.37480 7.68532 7.94127 8.36702 8.50356 9.04523 9.77476 10.22605 11.13800 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.004542 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.071322 B = 6163.832449 C = 7607.660115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 H 0.083 0.917 4 C -0.125 4.125 5 C -0.113 4.113 6 H 0.100 0.900 7 C 0.516 3.484 8 O -0.547 6.547 9 N -0.719 5.719 10 C 0.129 3.871 11 C -0.122 4.122 12 H 0.072 0.928 13 C -0.100 4.100 14 C -0.133 4.133 15 C 0.145 3.855 16 N -0.599 5.599 17 C -0.349 4.349 18 H 0.055 0.945 19 C -0.023 4.023 20 N -0.914 5.914 21 Si 1.061 2.939 22 H -0.294 1.294 23 H -0.293 1.293 24 H -0.285 1.285 25 C 0.160 3.840 26 C -0.148 4.148 27 C 0.062 3.938 28 O -0.384 6.384 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.405 0.595 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.054 0.946 43 H 0.269 0.731 44 H 0.079 0.921 45 H 0.016 0.984 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 0.311 -7.499 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 H 0.101 0.899 4 C -0.163 4.163 5 C -0.135 4.135 6 H 0.118 0.882 7 C 0.302 3.698 8 O -0.426 6.426 9 N -0.371 5.371 10 C 0.005 3.995 11 C -0.143 4.143 12 H 0.091 0.909 13 C -0.138 4.138 14 C -0.172 4.172 15 C 0.019 3.981 16 N -0.323 5.323 17 C -0.478 4.478 18 H 0.073 0.927 19 C -0.225 4.225 20 N -0.554 5.554 21 Si 0.891 3.109 22 H -0.221 1.221 23 H -0.219 1.219 24 H -0.211 1.211 25 C 0.034 3.966 26 C -0.186 4.186 27 C -0.015 4.015 28 O -0.303 6.303 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.240 0.760 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.034 0.966 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.118 0.882 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.050 -0.679 -6.906 13.048 hybrid contribution 1.000 1.367 -0.727 1.843 sum -10.050 0.688 -7.632 12.638 Atomic orbital electron populations 1.21725 0.93593 1.02275 1.02203 1.22338 0.94659 0.96998 0.84381 0.89921 1.21976 0.92966 1.01592 0.99770 1.21436 0.97467 0.93989 1.00562 0.88223 1.20568 0.82315 0.91230 0.75680 1.90617 1.57657 1.44089 1.50196 1.46102 1.06884 1.09920 1.74153 1.21394 0.93914 0.82820 1.01370 1.21947 0.92042 0.97986 1.02276 0.90947 1.21335 0.96206 0.95795 1.00509 1.21985 0.95234 0.99660 1.00342 1.20926 0.96482 0.87763 0.92935 1.44092 1.01282 1.04645 1.82235 1.19997 0.99160 0.97200 1.31466 0.92697 1.25791 0.99343 1.04104 0.93289 1.70755 1.30662 1.23466 1.30526 0.83593 0.75729 0.76055 0.75513 1.22123 1.21931 1.21103 1.20866 0.84584 1.00148 0.91047 1.22208 1.02368 1.00417 0.93610 1.22533 0.80757 0.99857 0.98323 1.87878 1.20990 1.78156 1.43312 0.92097 0.91307 0.92286 0.90433 0.90724 0.75957 0.91824 0.92153 0.92476 0.93135 0.92905 0.92324 0.96652 0.92739 0.92043 0.90290 0.96629 0.89921 0.89540 0.88244 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.56 37.16 0.36 -1.20 16 2 C 0.07 1.00 2.97 -26.69 -0.08 0.92 16 3 H 0.08 1.32 5.82 -51.93 -0.30 1.02 16 4 C -0.12 -1.50 4.56 -26.60 -0.12 -1.62 16 5 C -0.11 -1.41 3.04 -91.59 -0.28 -1.69 16 6 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 7 C 0.52 7.80 5.82 -10.99 -0.06 7.74 16 8 O -0.55 -9.66 13.85 5.56 0.08 -9.59 16 9 N -0.72 -10.84 5.21 -60.30 -0.31 -11.15 16 10 C 0.13 2.03 5.07 -4.04 -0.02 2.01 16 11 C -0.12 -2.09 2.36 -90.73 -0.21 -2.30 16 12 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 13 C -0.10 -1.58 5.17 -26.69 -0.14 -1.72 16 14 C -0.13 -2.22 6.08 -26.61 -0.16 -2.38 16 15 C 0.15 2.96 6.52 -3.71 -0.02 2.94 16 16 N -0.60 -14.27 2.86 -172.58 -0.49 -14.77 16 17 C -0.35 -9.31 9.49 -15.06 -0.14 -9.46 16 18 H 0.06 1.49 7.94 -52.49 -0.42 1.07 16 19 C -0.02 -0.62 4.69 -17.43 -0.08 -0.70 16 20 N -0.91 -25.70 12.41 55.49 0.69 -25.01 16 21 Si 1.06 23.92 29.99 -169.99 -5.10 18.83 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.16 3.43 3.75 -3.93 -0.01 3.41 16 26 C -0.15 -1.90 5.56 -26.60 -0.15 -2.04 16 27 C 0.06 0.90 6.62 37.20 0.25 1.15 16 28 O -0.38 -5.76 10.41 -35.23 -0.37 -6.13 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.91 8.02 -51.92 -0.42 0.50 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 5.96 7.08 -40.82 -0.29 5.67 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 42 H 0.05 1.12 7.93 -51.93 -0.41 0.70 16 43 H 0.27 7.74 6.71 -40.82 -0.27 7.46 16 44 H 0.08 1.84 5.50 -51.93 -0.29 1.55 16 45 H 0.02 0.36 7.87 -51.93 -0.41 -0.05 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.09 1.16 7.50 -51.93 -0.39 0.77 16 48 H 0.10 1.37 8.14 -51.92 -0.42 0.95 16 49 H 0.05 0.82 7.38 -51.93 -0.38 0.43 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -29.93 371.18 -9.51 -39.45 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -8.71 Total: 7.73 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.89 Total: -4.95 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.12 Total: -50.93 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.29 Total: -15.72 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.10 Total: 18.83 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.93 -9.51 -39.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345322708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.346 kcal (2) G-P(sol) polarization free energy of solvation -29.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds